View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18196_low_56 (Length: 264)
Name: NF18196_low_56
Description: NF18196
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18196_low_56 |
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Alignment Details
Target: chr7 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 14 - 249
Target Start/End: Complemental strand, 24551329 - 24551096
Alignment:
| Q |
14 |
aggggaggttggatatatttacataaacctcaggggaggtttgtgtaatttccccaatattctaatatcatactctgtcgttcttagaatgggcaatgca |
113 |
Q |
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| T |
24551329 |
aggggaggttggatatatttacataaacctcaggggaggtttgtgtaatttccccaatattctaatatca--ctctgtcgttcttagaatgggcaatgca |
24551232 |
T |
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| Q |
114 |
tgatttcgtaatcttaatcaatcaactacaccaaaaggaatatgccaaaacaattcccccaatgagaagaagtgtgtttgtttgtt----tgttataata |
209 |
Q |
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| T |
24551231 |
tgatttcgtaatcttaatcaa----ctacaccaaaaggaatatgccaaaacaattcccccaatgagaagaagtgtgtttgtttgtttgtttgttataata |
24551136 |
T |
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| Q |
210 |
agaacaacagaataaactcaaacaccttccattcattctt |
249 |
Q |
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| T |
24551135 |
agaacaacagaataaactcaaacaccttccattcattctt |
24551096 |
T |
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Target: chr1 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 16 - 68
Target Start/End: Original strand, 52283003 - 52283055
Alignment:
| Q |
16 |
gggaggttggatatatttacataaacctcaggggaggtttgtgtaatttcccc |
68 |
Q |
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| T |
52283003 |
gggaggttggatgtatttacataaacctcaggggaggtttgtgtaatttcccc |
52283055 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 64
Target Start/End: Complemental strand, 34019439 - 34019389
Alignment:
| Q |
14 |
aggggaggttggatatatttacataaacctcaggggaggtttgtgtaattt |
64 |
Q |
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| T |
34019439 |
aggggagatgggatatattaacataaacctcaggggtggttagtgtaattt |
34019389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 64
Target Start/End: Original strand, 2444214 - 2444264
Alignment:
| Q |
14 |
aggggaggttggatatatttacataaacctcaggggaggtttgtgtaattt |
64 |
Q |
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||||||||| || |||||| ||||||||||||||||||||| |||||||| |
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| T |
2444214 |
aggggaggtagggtatattaacataaacctcaggggaggttaatgtaattt |
2444264 |
T |
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