View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18196_low_58 (Length: 240)
Name: NF18196_low_58
Description: NF18196
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18196_low_58 |
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Alignment Details
Target: chr5 (Bit Score: 153; Significance: 3e-81; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 6814123 - 6813898
Alignment:
| Q |
1 |
ccttattttgatctttctcatatttcttatgtaatagttatcatcatctttggcaacatatgcatgtacattcatatgtgactcgtgtatccagtgagga |
100 |
Q |
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| T |
6814123 |
ccttattttgatctttctcatatttcttatgtaatagttatcatcatctttggcaacatatgcatgtacatgcatatgtgac----gtatctagtgagga |
6814028 |
T |
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| Q |
101 |
gaacataaattcaaaag---------taatatagttgtggtgaataaaatttgatttctatgtataatctaaagaattatctatccgaacaaaaaagaat |
191 |
Q |
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| T |
6814027 |
gaacataaattcaaaaaattcaaaaataaaatagttggggtgaataaaatttgatttctatgtataatctaaagaattatctatccaaacaaaaaagaat |
6813928 |
T |
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| Q |
192 |
aaaagaaatccgtctaatatatgggcaagg |
221 |
Q |
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| T |
6813927 |
aaaagaaatccgtataatatatgggcaagg |
6813898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 56 - 154
Target Start/End: Complemental strand, 6806887 - 6806781
Alignment:
| Q |
56 |
acatatgcatgtacattcatatgtgactcgtgtatccagtgaggagaacataaattc--------aaaagtaatatagttgtggtgaataaaatttgatt |
147 |
Q |
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| T |
6806887 |
acatatgcatgtacatgcatatgtgactcgtgtatttaatgaggagaacgtaaattcaaaaatgcaaaaataatatagttggggtgaataaaatttgatt |
6806788 |
T |
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| Q |
148 |
tctatgt |
154 |
Q |
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||||||| |
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| T |
6806787 |
tctatgt |
6806781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 150 - 194
Target Start/End: Complemental strand, 6806604 - 6806560
Alignment:
| Q |
150 |
tatgtataatctaaagaattatctatccgaacaaaaaagaataaa |
194 |
Q |
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| T |
6806604 |
tatgtctaatctaaagaatcatctatgcaaacaaaaaagaataaa |
6806560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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