View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18196_low_59 (Length: 240)
Name: NF18196_low_59
Description: NF18196
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18196_low_59 |
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Alignment Details
Target: chr7 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 19 - 225
Target Start/End: Original strand, 45048928 - 45049134
Alignment:
| Q |
19 |
atcaattatcactctcatcaaatcagcaaagaaatattagaaattcactcttcttcccaattttaaaatgatacttcaatcaagtatatggatttaaatg |
118 |
Q |
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| T |
45048928 |
atcaattatcactctcatcaaatcagcaaagaaaaattagaaattcactcttcttcccaattttaaaatgatacttcaaccaagtatatggatttaaatg |
45049027 |
T |
|
| Q |
119 |
atgtacaattttttggttagctcttaattttttaaagaagcatattggacacatctctttcttttggttttgttattagtgattctcctttctttaaatt |
218 |
Q |
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| T |
45049028 |
atgtacaattttttggttagctcttaattttttaaagaagcatattgcacacatctctttcttttggttttgttattagtgattctcctttctttaaatt |
45049127 |
T |
|
| Q |
219 |
ggtcttt |
225 |
Q |
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||||||| |
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| T |
45049128 |
ggtcttt |
45049134 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 186 - 226
Target Start/End: Complemental strand, 10671490 - 10671450
Alignment:
| Q |
186 |
ttttgttattagtgattctcctttctttaaattggtctttg |
226 |
Q |
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| T |
10671490 |
ttttgttatttgtgattctcctttctttcaattggtctttg |
10671450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 186 - 226
Target Start/End: Original strand, 34985215 - 34985255
Alignment:
| Q |
186 |
ttttgttattagtgattctcctttctttaaattggtctttg |
226 |
Q |
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| T |
34985215 |
ttttgttattagtgattttcctttctttcaattggtctttg |
34985255 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 186 - 225
Target Start/End: Original strand, 34026903 - 34026942
Alignment:
| Q |
186 |
ttttgttattagtgattctcctttctttaaattggtcttt |
225 |
Q |
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| T |
34026903 |
ttttgttattagtgattttcctttctttcaattggtcttt |
34026942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 130 - 162
Target Start/End: Original strand, 34025981 - 34026013
Alignment:
| Q |
130 |
tttggttagctcttaattttttaaagaagcata |
162 |
Q |
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| T |
34025981 |
tttggttagctcttaatttttgaaagaagcata |
34026013 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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