View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18196_low_6 (Length: 612)

Name: NF18196_low_6
Description: NF18196
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18196_low_6
NF18196_low_6
[»] chr5 (4 HSPs)
chr5 (15-404)||(12272923-12273328)
chr5 (435-472)||(5160774-5160811)
chr5 (435-475)||(38299035-38299075)
chr5 (435-478)||(12272835-12272879)
[»] chr8 (6 HSPs)
chr8 (434-505)||(12198741-12198812)
chr8 (434-505)||(12443169-12443240)
chr8 (438-478)||(1047385-1047425)
chr8 (435-472)||(37671517-37671554)
chr8 (435-475)||(29242762-29242802)
chr8 (449-478)||(35140625-35140654)
[»] chr4 (4 HSPs)
chr4 (435-478)||(25594010-25594053)
chr4 (439-478)||(31079056-31079095)
chr4 (435-475)||(32186558-32186598)
chr4 (430-475)||(7922094-7922139)
[»] chr2 (2 HSPs)
chr2 (437-478)||(20972343-20972384)
chr2 (435-475)||(26403132-26403172)
[»] chr7 (3 HSPs)
chr7 (354-397)||(7760812-7760855)
chr7 (435-478)||(29635590-29635633)
chr7 (435-483)||(35303980-35304028)
[»] chr3 (4 HSPs)
chr3 (435-478)||(45404921-45404964)
chr3 (359-397)||(30430273-30430311)
chr3 (438-479)||(34396638-34396679)
chr3 (435-472)||(41992850-41992887)
[»] scaffold0577 (1 HSPs)
scaffold0577 (438-478)||(2055-2095)
[»] chr6 (2 HSPs)
chr6 (435-475)||(6190694-6190734)
chr6 (435-475)||(17290621-17290661)
[»] chr1 (1 HSPs)
chr1 (435-475)||(30648664-30648704)


Alignment Details
Target: chr5 (Bit Score: 299; Significance: 1e-168; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 15 - 404
Target Start/End: Complemental strand, 12273328 - 12272923
Alignment:
Q  15 catagggacaggaatcatttcagtgcatggtggcattggatcaaagtgccttggataaatgttcatgtctaagtccagtgatggtggcataagagatgaa 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12273328 catagggacaggaatcatttcagtgcatggtggcattggatcaaagtgccttggataaatgttcatgtctaagtccagtgatggtggcataagagatgaa 12273229  T
Q  115 ggtggtgccattgtttggagtggacgaccagtgtatcttgatgttatacagcacacacgttctagctgcaaaatattcacaatctccaaattaaatcatg 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  12273228 ggtggtgccattgtttggagtggacgaccagtgtatcttgatgttatacagcacacacgttctagctgcaaaatattcacattctccaaattaaatcatg 12273129  T
Q  215 ca-nnnnnnnnncttttgttattagagattaggtagtagaattttttcccgtggctaatcaatttatttgaggttcaagaaagtgatataaa---ttgtt 310  Q
    ||          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||    
T  12273128 cattttttttttcttttgttattagagattaggtagtagaattttttcccgtggctaatcaatttatttgaggttcaagaaagtgatataaattgttgtt 12273029  T
Q  311 actaatgaaaaaatcaacaa-----------ttcaatttatagtacacttcaagtaggattaaa-taagtaattggttcctctaaatataccaacatttt 398  Q
    ||||| ||||||||||||||           |||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  12273028 actaaagaaaaaatcaacaagtaaattaaccttcaatttatagtacatttcaagtaggattaaattaagtaattggttcctctaaatataccaacatttt 12272929  T
Q  399 ggtccc 404  Q
    ||||||    
T  12272928 ggtccc 12272923  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 435 - 472
Target Start/End: Original strand, 5160774 - 5160811
Alignment:
Q  435 aactcatgtttaactttcatattttttaatgaaatttt 472  Q
    ||||||||| ||||||||||||||||||||||||||||    
T  5160774 aactcatgtctaactttcatattttttaatgaaatttt 5160811  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 435 - 475
Target Start/End: Complemental strand, 38299075 - 38299035
Alignment:
Q  435 aactcatgtttaactttcatattttttaatgaaattttcca 475  Q
    ||||||||| |||| ||||||||||||||||||||||||||    
T  38299075 aactcatgtctaaccttcatattttttaatgaaattttcca 38299035  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 435 - 478
Target Start/End: Complemental strand, 12272879 - 12272835
Alignment:
Q  435 aactcatgtttaactttcatatttttt-aatgaaattttccagaa 478  Q
    |||| ||||||||| |||||||||||| |||||||||||||||||    
T  12272879 aacttatgtttaaccttcatatttttttaatgaaattttccagaa 12272835  T

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Target: chr8 (Bit Score: 52; Significance: 2e-20; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 434 - 505
Target Start/End: Complemental strand, 12198812 - 12198741
Alignment:
Q  434 taactcatgtttaactttcatattttttaatgaaattttccagaatcaggcaacaaattatggcaatctctt 505  Q
    |||||||||| |||||||||||||||||||||||||||| || || ||||||| ||||||||||||||||||    
T  12198812 taactcatgtctaactttcatattttttaatgaaatttttcaaaaacaggcaaaaaattatggcaatctctt 12198741  T

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Target: chr8; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 434 - 505
Target Start/End: Complemental strand, 12443240 - 12443169
Alignment:
Q  434 taactcatgtttaactttcatattttttaatgaaattttccagaatcaggcaacaaattatggcaatctctt 505  Q
    |||||||||| |||||||||||||||||||||||||||| || || ||||||| ||||||||||||||||||    
T  12443240 taactcatgtctaactttcatattttttaatgaaatttttcaaaaacaggcaaaaaattatggcaatctctt 12443169  T

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Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 438 - 478
Target Start/End: Original strand, 1047385 - 1047425
Alignment:
Q  438 tcatgtttaactttcatattttttaatgaaattttccagaa 478  Q
    ||||||||||| |||||||||||||||||||||||||||||    
T  1047385 tcatgtttaaccttcatattttttaatgaaattttccagaa 1047425  T

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Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 435 - 472
Target Start/End: Original strand, 37671517 - 37671554
Alignment:
Q  435 aactcatgtttaactttcatattttttaatgaaatttt 472  Q
    ||||||||| ||||||||||||||||||||||||||||    
T  37671517 aactcatgtctaactttcatattttttaatgaaatttt 37671554  T

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Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 435 - 475
Target Start/End: Complemental strand, 29242802 - 29242762
Alignment:
Q  435 aactcatgtttaactttcatattttttaatgaaattttcca 475  Q
    ||||||||| |||| ||||||||||||||||||||||||||    
T  29242802 aactcatgtctaaccttcatattttttaatgaaattttcca 29242762  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 449 - 478
Target Start/End: Original strand, 35140625 - 35140654
Alignment:
Q  449 tttcatattttttaatgaaattttccagaa 478  Q
    ||||||||||||||||||||||||||||||    
T  35140625 tttcatattttttaatgaaattttccagaa 35140654  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000006; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 435 - 478
Target Start/End: Complemental strand, 25594053 - 25594010
Alignment:
Q  435 aactcatgtttaactttcatattttttaatgaaattttccagaa 478  Q
    ||||||||| |||| |||||||||||||||||||||||||||||    
T  25594053 aactcatgtctaaccttcatattttttaatgaaattttccagaa 25594010  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 439 - 478
Target Start/End: Original strand, 31079056 - 31079095
Alignment:
Q  439 catgtttaactttcatattttttaatgaaattttccagaa 478  Q
    |||||||||||||||||||||||||||||||||| |||||    
T  31079056 catgtttaactttcatattttttaatgaaattttacagaa 31079095  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 435 - 475
Target Start/End: Complemental strand, 32186598 - 32186558
Alignment:
Q  435 aactcatgtttaactttcatattttttaatgaaattttcca 475  Q
    ||||||||| |||||||||||||||| ||||||||||||||    
T  32186598 aactcatgtctaactttcatatttttcaatgaaattttcca 32186558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 430 - 475
Target Start/End: Complemental strand, 7922139 - 7922094
Alignment:
Q  430 agtctaactcatgtttaactttcatattttttaatgaaattttcca 475  Q
    |||||||||||||  |||||||||||||||| ||||||| ||||||    
T  7922139 agtctaactcatgagtaactttcatatttttgaatgaaaatttcca 7922094  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000009; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 437 - 478
Target Start/End: Complemental strand, 20972384 - 20972343
Alignment:
Q  437 ctcatgtttaactttcatattttttaatgaaattttccagaa 478  Q
    ||||||| |||| |||||||||||||||||||||||||||||    
T  20972384 ctcatgtctaaccttcatattttttaatgaaattttccagaa 20972343  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 435 - 475
Target Start/End: Original strand, 26403132 - 26403172
Alignment:
Q  435 aactcatgtttaactttcatattttttaatgaaattttcca 475  Q
    ||||||||| |||| ||||||||||||||||||| ||||||    
T  26403132 aactcatgtctaacattcatattttttaatgaaaatttcca 26403172  T

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Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 354 - 397
Target Start/End: Complemental strand, 7760855 - 7760812
Alignment:
Q  354 taggattaaataagtaattggttcctctaaatataccaacattt 397  Q
    ||||||||||||||||| | ||||| ||||||||||||||||||    
T  7760855 taggattaaataagtaaatagttcccctaaatataccaacattt 7760812  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 435 - 478
Target Start/End: Complemental strand, 29635633 - 29635590
Alignment:
Q  435 aactcatgtttaactttcatattttttaatgaaattttccagaa 478  Q
    ||||||||| |||| |||||||||||||||||||||||| ||||    
T  29635633 aactcatgtctaaccttcatattttttaatgaaattttctagaa 29635590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 435 - 483
Target Start/End: Original strand, 35303980 - 35304028
Alignment:
Q  435 aactcatgtttaactttcatattttttaatgaaattttccagaatcagg 483  Q
    ||||||||| |||| ||||| |||||||||||||||||| |||| ||||    
T  35303980 aactcatgtctaaccttcattttttttaatgaaattttctagaaacagg 35304028  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 435 - 478
Target Start/End: Original strand, 45404921 - 45404964
Alignment:
Q  435 aactcatgtttaactttcatattttttaatgaaattttccagaa 478  Q
    ||||||||| |||| |||||||||||||||||||||||| ||||    
T  45404921 aactcatgtctaaccttcatattttttaatgaaattttcaagaa 45404964  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 359 - 397
Target Start/End: Original strand, 30430273 - 30430311
Alignment:
Q  359 ttaaataagtaattggttcctctaaatataccaacattt 397  Q
    |||||||||||| |||| |||||||||||||||||||||    
T  30430273 ttaaataagtaaatggtccctctaaatataccaacattt 30430311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 438 - 479
Target Start/End: Original strand, 34396638 - 34396679
Alignment:
Q  438 tcatgtttaactttcatattttttaatgaaattttccagaat 479  Q
    |||||| |||| ||||||||||||||||||||||| ||||||    
T  34396638 tcatgtgtaaccttcatattttttaatgaaatttttcagaat 34396679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 435 - 472
Target Start/End: Original strand, 41992850 - 41992887
Alignment:
Q  435 aactcatgtttaactttcatattttttaatgaaatttt 472  Q
    ||||||||| |||||||| |||||||||||||||||||    
T  41992850 aactcatgtataactttcgtattttttaatgaaatttt 41992887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0577 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0577
Description:

Target: scaffold0577; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 438 - 478
Target Start/End: Complemental strand, 2095 - 2055
Alignment:
Q  438 tcatgtttaactttcatattttttaatgaaattttccagaa 478  Q
    |||||| ||| ||||||||||||||||||||||||| ||||    
T  2095 tcatgtataattttcatattttttaatgaaattttctagaa 2055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000009; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 435 - 475
Target Start/End: Original strand, 6190694 - 6190734
Alignment:
Q  435 aactcatgtttaactttcatattttttaatgaaattttcca 475  Q
    ||||||||| |||||||||||||| ||||||||||| ||||    
T  6190694 aactcatgtctaactttcatatttgttaatgaaattctcca 6190734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 435 - 475
Target Start/End: Complemental strand, 17290661 - 17290621
Alignment:
Q  435 aactcatgtttaactttcatattttttaatgaaattttcca 475  Q
    |||| |||| |||| ||||||||||||||||||||||||||    
T  17290661 aacttatgtctaaccttcatattttttaatgaaattttcca 17290621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 435 - 475
Target Start/End: Original strand, 30648664 - 30648704
Alignment:
Q  435 aactcatgtttaactttcatattttttaatgaaattttcca 475  Q
    ||||||||| |||| ||||||||||||| ||||||||||||    
T  30648664 aactcatgtctaaccttcatattttttagtgaaattttcca 30648704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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