View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18196_low_60 (Length: 239)

Name: NF18196_low_60
Description: NF18196
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18196_low_60
NF18196_low_60
[»] chr8 (1 HSPs)
chr8 (24-239)||(29274074-29274287)
[»] chr1 (3 HSPs)
chr1 (24-239)||(268648-268885)
chr1 (44-78)||(28127985-28128019)
chr1 (24-78)||(28164653-28164707)
[»] chr6 (32 HSPs)
chr6 (38-156)||(26646222-26646342)
chr6 (38-156)||(26752190-26752310)
chr6 (35-80)||(27338380-27338425)
chr6 (35-80)||(27399120-27399165)
chr6 (35-98)||(26622785-26622848)
chr6 (35-98)||(26728763-26728826)
chr6 (35-80)||(31284115-31284160)
chr6 (35-75)||(27593335-27593375)
chr6 (35-75)||(27677929-27677969)
chr6 (32-80)||(27718691-27718739)
chr6 (37-80)||(26655816-26655859)
chr6 (37-80)||(26761787-26761830)
chr6 (37-80)||(27229059-27229102)
chr6 (37-80)||(28780966-28781009)
chr6 (35-73)||(27678780-27678818)
chr6 (24-77)||(26861446-26861499)
chr6 (24-80)||(27698798-27698854)
chr6 (24-80)||(27725149-27725205)
chr6 (24-80)||(28786105-28786161)
chr6 (24-80)||(28792226-28792282)
chr6 (41-80)||(27605032-27605071)
chr6 (48-78)||(26055788-26055818)
chr6 (35-73)||(27706717-27706755)
chr6 (49-78)||(25481604-25481633)
chr6 (49-78)||(25538402-25538431)
chr6 (49-78)||(25579581-25579610)
chr6 (49-78)||(26048707-26048736)
chr6 (49-78)||(26069876-26069905)
chr6 (49-78)||(26075758-26075787)
chr6 (49-78)||(26142727-26142756)
chr6 (44-80)||(26823673-26823709)
chr6 (24-80)||(27611306-27611362)
[»] scaffold1254 (1 HSPs)
scaffold1254 (27-80)||(224-277)
[»] scaffold0419 (1 HSPs)
scaffold0419 (27-80)||(7352-7405)
[»] chr4 (4 HSPs)
chr4 (37-81)||(18724389-18724433)
chr4 (37-80)||(18699704-18699747)
chr4 (37-80)||(18655781-18655824)
chr4 (37-80)||(18731808-18731851)
[»] scaffold0349 (3 HSPs)
scaffold0349 (32-80)||(8113-8161)
scaffold0349 (24-80)||(3726-3782)
scaffold0349 (24-80)||(14659-14715)
[»] scaffold0277 (2 HSPs)
scaffold0277 (37-80)||(13949-13992)
scaffold0277 (24-80)||(4975-5031)


Alignment Details
Target: chr8 (Bit Score: 172; Significance: 1e-92; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 24 - 239
Target Start/End: Original strand, 29274074 - 29274287
Alignment:
Q  24 atccatatgagattgaagaggaagaggaaggtgattgcatagccatgagaattgagaagaaattaatggaagataggaggattgtttgagaataaagaat 123  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| |||||    
T  29274074 atccatatgagattgaagaggaagaggaaggtgattgcatagccatgaga-ttgagaagaaattaatggaagatag-aggattgtttgagaatatagaat 29274171  T
Q  124 atggatgagtaggtgtatgttattgttggcctcagtatatataaaaattgcaagtgtgaacttcgttaccttttctcctaagtgtgacttgtgtcgagtc 223  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||  |||||||||||||  ||||    
T  29274172 atggatgagtaggtgtatgttattgttggcctcagtatatatataaattgcaagtgtgaacttcgttaccttttctcctccgtgtgacttgtgtgaagtc 29274271  T
Q  224 tattaaaatataataa 239  Q
    | ||||||||||||||    
T  29274272 tgttaaaatataataa 29274287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 122; Significance: 1e-62; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 24 - 239
Target Start/End: Original strand, 268648 - 268885
Alignment:
Q  24 atccatatgagattgaagaggaagaggaaggtgattgcatagccatgagaattgagaagaaattaatggaagataggaggattgtttgagaataaagaat 123  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||    
T  268648 atccatatgagattgaagaggaagaggaaggtgattgcatagccatgagaactgagaagaaattaatggaagataggaggattgtttgagaatatagaat 268747  T
Q  124 atggatgagtaggtgtatgttattgttggcct---------------------cagtatatataaaaattgcaa-gtgtgaacttcgttaccttttctcc 201  Q
    ||||||||||||||||||  ||||||||||||                     |||||||||||||||||||||  | ||||||||||||||||||| ||    
T  268748 atggatgagtaggtgtatactattgttggcctctgtaatataaaactatgtaacagtatatataaaaattgcaatctatgaacttcgttaccttttcgcc 268847  T
Q  202 taagtgtgacttgtgtcgagtctattaaaatataataa 239  Q
    |  |||||||||||||||||||| ||||||||||||||    
T  268848 tccgtgtgacttgtgtcgagtctgttaaaatataataa 268885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 78
Target Start/End: Original strand, 28127985 - 28128019
Alignment:
Q  44 gaagaggaaggtgattgcatagccatgagaattga 78  Q
    ||||||||| |||||||||||||||||||||||||    
T  28127985 gaagaggaatgtgattgcatagccatgagaattga 28128019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 78
Target Start/End: Original strand, 28164653 - 28164707
Alignment:
Q  24 atccatatgagattgaagaggaagaggaaggtgattgcatagccatgagaattga 78  Q
    ||||||| || |||||||||||||||||| | ||| | |||||||||||||||||    
T  28164653 atccataggaaattgaagaggaagaggaatgcgatcgtatagccatgagaattga 28164707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 82; Significance: 8e-39; HSPs: 32)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 38 - 156
Target Start/End: Complemental strand, 26646342 - 26646222
Alignment:
Q  38 gaagaggaagaggaaggtgattgcatagccatgagaattgagaagaaattaatggaagataggagg--attgtttgagaataaagaatatggatgagtag 135  Q
    ||||||||| ||||||| ||||||||||||||||||||||| | ||||||||||||||||||||||  ||||||| |||||| ||||||||||||||| |    
T  26646342 gaagaggaataggaaggagattgcatagccatgagaattgaaaggaaattaatggaagataggaggatattgtttaagaatacagaatatggatgagttg 26646243  T
Q  136 gtgtatgttattgttggcctc 156  Q
    |||||||||||||||||||||    
T  26646242 gtgtatgttattgttggcctc 26646222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 38 - 156
Target Start/End: Complemental strand, 26752310 - 26752190
Alignment:
Q  38 gaagaggaagaggaaggtgattgcatagccatgagaattgagaagaaattaatggaagataggagg--attgtttgagaataaagaatatggatgagtag 135  Q
    ||||||||| ||||||| ||||||||||||||||||||||| | ||||||||||||||||||||||  ||||||| |||||| ||||||||||||||| |    
T  26752310 gaagaggaataggaaggagattgcatagccatgagaattgaaaggaaattaatggaagataggaggatattgtttaagaatacagaatatggatgagttg 26752211  T
Q  136 gtgtatgttattgttggcctc 156  Q
    |||||||||||||||||||||    
T  26752210 gtgtatgttattgttggcctc 26752190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 35 - 80
Target Start/End: Original strand, 27338380 - 27338425
Alignment:
Q  35 attgaagaggaagaggaaggtgattgcatagccatgagaattgaga 80  Q
    |||||||||||||||||| |||||||||||||||||||||||||||    
T  27338380 attgaagaggaagaggaaagtgattgcatagccatgagaattgaga 27338425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 35 - 80
Target Start/End: Original strand, 27399120 - 27399165
Alignment:
Q  35 attgaagaggaagaggaaggtgattgcatagccatgagaattgaga 80  Q
    |||||||||||||||||| |||||||||||||||||||||||||||    
T  27399120 attgaagaggaagaggaaagtgattgcatagccatgagaattgaga 27399165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 35 - 98
Target Start/End: Complemental strand, 26622848 - 26622785
Alignment:
Q  35 attgaagaggaagaggaaggtgattgcatagccatgagaattgagaagaaattaatggaagata 98  Q
    ||||||||||||||||| ||||||||||||||||||| |||||| || |||||| | |||||||    
T  26622848 attgaagaggaagaggatggtgattgcatagccatgataattgataacaaattagttgaagata 26622785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 35 - 98
Target Start/End: Complemental strand, 26728826 - 26728763
Alignment:
Q  35 attgaagaggaagaggaaggtgattgcatagccatgagaattgagaagaaattaatggaagata 98  Q
    ||||||||||||||||| ||||||||||||||||||| |||||| || |||||| | |||||||    
T  26728826 attgaagaggaagaggatggtgattgcatagccatgataattgataacaaattagttgaagata 26728763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 35 - 80
Target Start/End: Complemental strand, 31284160 - 31284115
Alignment:
Q  35 attgaagaggaagaggaaggtgattgcatagccatgagaattgaga 80  Q
    ||||||||||||||||||| ||||||||||||||||||| ||||||    
T  31284160 attgaagaggaagaggaagatgattgcatagccatgagatttgaga 31284115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 35 - 75
Target Start/End: Original strand, 27593335 - 27593375
Alignment:
Q  35 attgaagaggaagaggaaggtgattgcatagccatgagaat 75  Q
    ||||||| |||||||||||||||||||||||||||||||||    
T  27593335 attgaagtggaagaggaaggtgattgcatagccatgagaat 27593375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 35 - 75
Target Start/End: Original strand, 27677929 - 27677969
Alignment:
Q  35 attgaagaggaagaggaaggtgattgcatagccatgagaat 75  Q
    ||||||| |||||||||||||||||||||||||||||||||    
T  27677929 attgaagtggaagaggaaggtgattgcatagccatgagaat 27677969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 32 - 80
Target Start/End: Original strand, 27718691 - 27718739
Alignment:
Q  32 gagattgaagaggaagaggaaggtgattgcatagccatgagaattgaga 80  Q
    |||| ||||||||| |||||||||||||| |||||||||||||||||||    
T  27718691 gagaatgaagaggatgaggaaggtgattgtatagccatgagaattgaga 27718739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 37 - 80
Target Start/End: Complemental strand, 26655859 - 26655816
Alignment:
Q  37 tgaagaggaagaggaaggtgattgcatagccatgagaattgaga 80  Q
    ||||||||| |||||||||||||| |||||||||||||||||||    
T  26655859 tgaagaggatgaggaaggtgattgtatagccatgagaattgaga 26655816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 37 - 80
Target Start/End: Complemental strand, 26761830 - 26761787
Alignment:
Q  37 tgaagaggaagaggaaggtgattgcatagccatgagaattgaga 80  Q
    ||||||||| |||||||||||||| |||||||||||||||||||    
T  26761830 tgaagaggatgaggaaggtgattgtatagccatgagaattgaga 26761787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 37 - 80
Target Start/End: Complemental strand, 27229102 - 27229059
Alignment:
Q  37 tgaagaggaagaggaaggtgattgcatagccatgagaattgaga 80  Q
    |||||||||||||||||||||||| |||||||||||| ||||||    
T  27229102 tgaagaggaagaggaaggtgattgtatagccatgagacttgaga 27229059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 37 - 80
Target Start/End: Complemental strand, 28781009 - 28780966
Alignment:
Q  37 tgaagaggaagaggaaggtgattgcatagccatgagaattgaga 80  Q
    ||||||||||||||||||| ||||||||||||||| ||||||||    
T  28781009 tgaagaggaagaggaaggtaattgcatagccatgataattgaga 28780966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 35 - 73
Target Start/End: Complemental strand, 27678818 - 27678780
Alignment:
Q  35 attgaagaggaagaggaaggtgattgcatagccatgaga 73  Q
    ||||||| |||||||||||||||||||||||||||||||    
T  27678818 attgaagtggaagaggaaggtgattgcatagccatgaga 27678780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 24 - 77
Target Start/End: Complemental strand, 26861499 - 26861446
Alignment:
Q  24 atccatatgagattgaagaggaagaggaaggtgattgcatagccatgagaattg 77  Q
    ||||||| || || |||||||||||| ||||||||||||||||||| |||||||    
T  26861499 atccataggaaatggaagaggaagagcaaggtgattgcatagccatcagaattg 26861446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 80
Target Start/End: Original strand, 27698798 - 27698854
Alignment:
Q  24 atccatatgagattgaagaggaagaggaaggtgattgcatagccatgagaattgaga 80  Q
    ||||||| || | ||||| ||| |||||||||||||| |||||||||||||||||||    
T  27698798 atccataggaaaatgaagtggatgaggaaggtgattgtatagccatgagaattgaga 27698854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 80
Target Start/End: Original strand, 27725149 - 27725205
Alignment:
Q  24 atccatatgagattgaagaggaagaggaaggtgattgcatagccatgagaattgaga 80  Q
    ||||||| || | ||||||||| |||||||||||||| |||||||||| ||||||||    
T  27725149 atccataggaaaatgaagaggatgaggaaggtgattgtatagccatgacaattgaga 27725205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 80
Target Start/End: Complemental strand, 28786161 - 28786105
Alignment:
Q  24 atccatatgagattgaagaggaagaggaaggtgattgcatagccatgagaattgaga 80  Q
    ||||||| || | ||||||||| |||||||||||||| |||||||| ||||||||||    
T  28786161 atccataggaaaatgaagaggatgaggaaggtgattgtatagccataagaattgaga 28786105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 80
Target Start/End: Complemental strand, 28792282 - 28792226
Alignment:
Q  24 atccatatgagattgaagaggaagaggaaggtgattgcatagccatgagaattgaga 80  Q
    ||||||| || | ||||||||| |||||||||||||| |||||||| ||||||||||    
T  28792282 atccataggaaaatgaagaggatgaggaaggtgattgtatagccataagaattgaga 28792226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 41 - 80
Target Start/End: Original strand, 27605032 - 27605071
Alignment:
Q  41 gaggaagaggaaggtgattgcatagccatgagaattgaga 80  Q
    ||||| ||||||||| ||||||||||||||||||||||||    
T  27605032 gaggatgaggaaggtaattgcatagccatgagaattgaga 27605071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 78
Target Start/End: Complemental strand, 26055818 - 26055788
Alignment:
Q  48 aggaaggtgattgcatagccatgagaattga 78  Q
    |||||||||||||||||||||||||||||||    
T  26055818 aggaaggtgattgcatagccatgagaattga 26055788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 73
Target Start/End: Original strand, 27706717 - 27706755
Alignment:
Q  35 attgaagaggaagaggaaggtgattgcatagccatgaga 73  Q
    ||||||| ||||||| |||||||||||||||||||||||    
T  27706717 attgaagtggaagagaaaggtgattgcatagccatgaga 27706755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 49 - 78
Target Start/End: Complemental strand, 25481633 - 25481604
Alignment:
Q  49 ggaaggtgattgcatagccatgagaattga 78  Q
    ||||||||||||||||||||||||||||||    
T  25481633 ggaaggtgattgcatagccatgagaattga 25481604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 49 - 78
Target Start/End: Complemental strand, 25538431 - 25538402
Alignment:
Q  49 ggaaggtgattgcatagccatgagaattga 78  Q
    ||||||||||||||||||||||||||||||    
T  25538431 ggaaggtgattgcatagccatgagaattga 25538402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 49 - 78
Target Start/End: Complemental strand, 25579610 - 25579581
Alignment:
Q  49 ggaaggtgattgcatagccatgagaattga 78  Q
    ||||||||||||||||||||||||||||||    
T  25579610 ggaaggtgattgcatagccatgagaattga 25579581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 49 - 78
Target Start/End: Complemental strand, 26048736 - 26048707
Alignment:
Q  49 ggaaggtgattgcatagccatgagaattga 78  Q
    ||||||||||||||||||||||||||||||    
T  26048736 ggaaggtgattgcatagccatgagaattga 26048707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 49 - 78
Target Start/End: Complemental strand, 26069905 - 26069876
Alignment:
Q  49 ggaaggtgattgcatagccatgagaattga 78  Q
    ||||||||||||||||||||||||||||||    
T  26069905 ggaaggtgattgcatagccatgagaattga 26069876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 49 - 78
Target Start/End: Complemental strand, 26075787 - 26075758
Alignment:
Q  49 ggaaggtgattgcatagccatgagaattga 78  Q
    ||||||||||||||||||||||||||||||    
T  26075787 ggaaggtgattgcatagccatgagaattga 26075758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 49 - 78
Target Start/End: Complemental strand, 26142756 - 26142727
Alignment:
Q  49 ggaaggtgattgcatagccatgagaattga 78  Q
    ||||||||||||||||||||||||||||||    
T  26142756 ggaaggtgattgcatagccatgagaattga 26142727  T

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Target: chr6; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 80
Target Start/End: Complemental strand, 26823709 - 26823673
Alignment:
Q  44 gaagaggaaggtgattgcatagccatgagaattgaga 80  Q
    |||||||||| ||| ||||||||||||||||||||||    
T  26823709 gaagaggaagttgactgcatagccatgagaattgaga 26823673  T

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Target: chr6; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 80
Target Start/End: Original strand, 27611306 - 27611362
Alignment:
Q  24 atccatatgagattgaagaggaagaggaaggtgattgcatagccatgagaattgaga 80  Q
    ||||||| || | |||||| |||||||||| | ||||||||||||||| ||||||||    
T  27611306 atccataggaaaatgaagaagaagaggaagctaattgcatagccatgaaaattgaga 27611362  T

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Target: scaffold1254 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold1254
Description:

Target: scaffold1254; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 27 - 80
Target Start/End: Original strand, 224 - 277
Alignment:
Q  27 catatgagattgaagaggaagaggaaggtgattgcatagccatgagaattgaga 80  Q
    ||||||| | |||||||||||||| |||||||||||||||||||||||||||||    
T  224 catatgaaaatgaagaggaagagggaggtgattgcatagccatgagaattgaga 277  T

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Target: scaffold0419 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0419
Description:

Target: scaffold0419; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 27 - 80
Target Start/End: Complemental strand, 7405 - 7352
Alignment:
Q  27 catatgagattgaagaggaagaggaaggtgattgcatagccatgagaattgaga 80  Q
    ||||||| | |||||||||||||| |||||||||||||||||||||||||||||    
T  7405 catatgaaaatgaagaggaagagggaggtgattgcatagccatgagaattgaga 7352  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 37 - 81
Target Start/End: Original strand, 18724389 - 18724433
Alignment:
Q  37 tgaagaggaagaggaaggtgattgcatagccatgagaattgagaa 81  Q
    ||||||||| |||||||||||||||||||||||||||||||||||    
T  18724389 tgaagaggatgaggaaggtgattgcatagccatgagaattgagaa 18724433  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 37 - 80
Target Start/End: Original strand, 18699704 - 18699747
Alignment:
Q  37 tgaagaggaagaggaaggtgattgcatagccatgagaattgaga 80  Q
    ||||||||| ||||||||||||||||||||||||||||||||||    
T  18699704 tgaagaggatgaggaaggtgattgcatagccatgagaattgaga 18699747  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 37 - 80
Target Start/End: Original strand, 18655781 - 18655824
Alignment:
Q  37 tgaagaggaagaggaaggtgattgcatagccatgagaattgaga 80  Q
    ||||||||| ||||||||||||||| ||||||||| ||||||||    
T  18655781 tgaagaggatgaggaaggtgattgcctagccatgaaaattgaga 18655824  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 37 - 80
Target Start/End: Original strand, 18731808 - 18731851
Alignment:
Q  37 tgaagaggaagaggaaggtgattgcatagccatgagaattgaga 80  Q
    ||||||||| ||||||||||||||||||||||||| ||| ||||    
T  18731808 tgaagaggatgaggaaggtgattgcatagccatgaaaatcgaga 18731851  T

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Target: scaffold0349 (Bit Score: 37; Significance: 0.000000000005; HSPs: 3)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 32 - 80
Target Start/End: Original strand, 8113 - 8161
Alignment:
Q  32 gagattgaagaggaagaggaaggtgattgcatagccatgagaattgaga 80  Q
    |||| ||||||||| |||||||||||||| |||||||||||||||||||    
T  8113 gagaatgaagaggatgaggaaggtgattgtatagccatgagaattgaga 8161  T

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Target: scaffold0349; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 80
Target Start/End: Original strand, 3726 - 3782
Alignment:
Q  24 atccatatgagattgaagaggaagaggaaggtgattgcatagccatgagaattgaga 80  Q
    ||||||| || | ||||||||| |||||||||||||| |||||||||| ||||||||    
T  3726 atccataggaaaatgaagaggatgaggaaggtgattgtatagccatgacaattgaga 3782  T

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Target: scaffold0349; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 80
Target Start/End: Original strand, 14659 - 14715
Alignment:
Q  24 atccatatgagattgaagaggaagaggaaggtgattgcatagccatgagaattgaga 80  Q
    ||||||| || | ||||| ||| |||||||||||||| |||||||||||||||||||    
T  14659 atccataggaaaatgaagtggatgaggaaggtgattgtatagccatgagaattgaga 14715  T

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Target: scaffold0277 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 37 - 80
Target Start/End: Original strand, 13949 - 13992
Alignment:
Q  37 tgaagaggaagaggaaggtgattgcatagccatgagaattgaga 80  Q
    ||||||||||||||||||| ||||||||||||||| ||||||||    
T  13949 tgaagaggaagaggaaggtaattgcatagccatgataattgaga 13992  T

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Target: scaffold0277; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 80
Target Start/End: Original strand, 4975 - 5031
Alignment:
Q  24 atccatatgagattgaagaggaagaggaaggtgattgcatagccatgagaattgaga 80  Q
    ||||||| || | ||||||||| |||||||||||||| |||||||| ||||||||||    
T  4975 atccataggaaaatgaagaggatgaggaaggtgattgtatagccataagaattgaga 5031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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