View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18196_low_62 (Length: 238)
Name: NF18196_low_62
Description: NF18196
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18196_low_62 |
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Alignment Details
Target: chr4 (Bit Score: 120; Significance: 2e-61; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 95 - 222
Target Start/End: Original strand, 1160824 - 1160951
Alignment:
| Q |
95 |
aatgatgatatttatgtatatatgtgaagatttcttgcaaatcattttgtacaaatatatatctttatttgtttgttagacctataattattggaacaaa |
194 |
Q |
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| T |
1160824 |
aatgatgatatttatgtatatatgtgaagatttcttgcaaatcattttgtacaaatatatatctttatttgtttgttagatctataattattggaacaaa |
1160923 |
T |
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| Q |
195 |
cttaattacgatataaacatgtatagat |
222 |
Q |
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| T |
1160924 |
cttaattaccatataaacatgtatagat |
1160951 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 46 - 87
Target Start/End: Original strand, 1160714 - 1160755
Alignment:
| Q |
46 |
tgaaagtaatttaatgtggtcccaaaaaatggtaatagaaag |
87 |
Q |
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| T |
1160714 |
tgaaagtaattcaatgtggtcccaaaaaatggtaatagaaag |
1160755 |
T |
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