View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18196_low_65 (Length: 236)
Name: NF18196_low_65
Description: NF18196
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18196_low_65 |
 | |
|
| [»] chr8 (4 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 228; Significance: 1e-126; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 37701131 - 37700897
Alignment:
| Q |
1 |
agcaattggtattgaatcaatatcctcaataagcagagcaagtggaaatcctcaatgaataaagcaagtggttccctcttcaaaatatgatcatatgaca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37701131 |
agcaattggtattgaatcaatatcctcaataagcagagcaagtggaaatcctcaatgaataaagcaagtggttccctcttcaaaatatgatcatatgaca |
37701032 |
T |
|
| Q |
101 |
ggcgagttaaagaaaggggtcaagggcaagcaagaaaagggaaaatacttccttaattttggtctggtttggcggttcagttcggttctcggttcttttt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37701031 |
ggcgagttaaagaaaggggtcaagggcaagcaagaaaagggaaaatactt-cttaattttggtctggtttggcggttcagttcggttctcggttcttttt |
37700933 |
T |
|
| Q |
201 |
gctcactcctaagtattgattgtggaaatcctcaat |
236 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
37700932 |
gctcactcctaagtattgattgtggaaatcctcaat |
37700897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 85 - 143
Target Start/End: Original strand, 37701141 - 37701199
Alignment:
| Q |
85 |
atatgatcatatgacaggcgagttaaagaaaggggtcaagggcaagcaagaaaagggaa |
143 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
37701141 |
atatgatcatatgacaggcgagttaaagaaagggatcaagggcaagcaagaaaagggaa |
37701199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 42 - 86
Target Start/End: Complemental strand, 37700911 - 37700868
Alignment:
| Q |
42 |
gtggaaatcctcaatgaataaagcaagtggttccctcttcaaaat |
86 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
37700911 |
gtggaaatcctcaat-aataaagcaagtggttccctcttcaaaat |
37700868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 143
Target Start/End: Original strand, 41795900 - 41795956
Alignment:
| Q |
87 |
atgatcatatgacaggcgagttaaagaaaggggtcaagggcaagcaagaaaagggaa |
143 |
Q |
| |
|
|||||||| ||||||| |||||||||||| || |||| ||||||| |||||| |||| |
|
|
| T |
41795900 |
atgatcatctgacaggtgagttaaagaaaaggatcaaaggcaagcgagaaaaaggaa |
41795956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University