View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18196_low_8 (Length: 595)
Name: NF18196_low_8
Description: NF18196
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18196_low_8 |
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Alignment Details
Target: chr6 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 16 - 267
Target Start/End: Original strand, 30789603 - 30789854
Alignment:
| Q |
16 |
acagacaatccgaattcaaagaacatgaaaaggggataagagtaaagaaccaacctcagcaataccatcagaagaaacattcgaagcattacgataaaat |
115 |
Q |
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| T |
30789603 |
acagacaatccgaattcaaagaacatgaaaagaggataagagtaaagaacctacctcagcaataccatcagaagaaacattcgaagcattacgataaaac |
30789702 |
T |
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| Q |
116 |
ccactatttccaaaagactctaatccacgacgtgttgtgaaaatatcagaattatcttccaaaaatgacaaactttcttgatttaggtttacactacgcc |
215 |
Q |
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| T |
30789703 |
ccactatttccaaaagactctaatccaggacgtgttgtaaaaatatcagaattatcttccaaaaatgacaaactttcttgatttaggtttacactacgcc |
30789802 |
T |
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| Q |
216 |
ttccaaaaattgatgaacgctgccaacacatataaaaatttataacatatct |
267 |
Q |
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| T |
30789803 |
ttccaaaaattgatgaacgctgccaacacatataaaaatttataacatatct |
30789854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 328 - 578
Target Start/End: Original strand, 30789915 - 30790168
Alignment:
| Q |
328 |
tataaccaatcattaacatatttgtcatgcacaatataataaaacnnnnnnncaaagctatataattataatagaaatgatac---ataatttcaaagtc |
424 |
Q |
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| T |
30789915 |
tataaccaatcattaacatatttgtcatgcacaatataataaaacaaaaaaacaaagctatataattataatagaaatgatactacataatttcaaagtc |
30790014 |
T |
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| Q |
425 |
tatgatcactagacttattttcaaggggtccacaataaatcaatcaagaaaattgttattcgtatgacttttagaaattggaagcgtgtacgtataagga |
524 |
Q |
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| T |
30790015 |
tatgatcactagacttattttcaaggggtccacaataaatcaatcaagaaaattgttattcgtatgacttttagaaattggaagcgtgtacgtataagga |
30790114 |
T |
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| Q |
525 |
gaaaggttgtatagtcgctatttctataaaatgatttttgttagaacagtaaac |
578 |
Q |
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| T |
30790115 |
gaaaggttgtatagtcgctatttctataaaattatttttgttagaacagtaaac |
30790168 |
T |
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