View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18197_high_12 (Length: 305)
Name: NF18197_high_12
Description: NF18197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18197_high_12 |
 | |
|
| [»] scaffold0536 (3 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 288; Significance: 1e-161; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 13 - 304
Target Start/End: Original strand, 48951024 - 48951315
Alignment:
| Q |
13 |
tcacgaacaacatctttagcaatttttgctaactcttgggctttgtttctaatttggacagcttcatcacccccatccatcaaccttctcatagccttct |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48951024 |
tcacgaacaacatctttagcaatttttgctaactcttgggctttgtttctaatttggacagcttcatcacccccatccatcaaccttctcatagccttct |
48951123 |
T |
|
| Q |
113 |
ttataaaatctctcttcaccaactttttcatatctcgaaaagctgttgtgatccattcatctgcacctacttccactcctatcccacgcacatgagttat |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48951124 |
ttataaaatctctcttcaccaactttttcatatctcgaaaagctgttgtgatccactcatctgcacctacttccactcctatcccacgcacatgagttat |
48951223 |
T |
|
| Q |
213 |
gagcttctcattgtagaactgatcactatgcaccggccacgtgatcatcggaacccctacactaatagcctccgtcacagagttccacccac |
304 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48951224 |
gagcttctcattgtagaactgatcactatgcaccggccacgtgatcatcggaacccctacactaatagcctccgtcacagagttccacccac |
48951315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 157 - 277
Target Start/End: Complemental strand, 48912599 - 48912479
Alignment:
| Q |
157 |
gttgtgatccattcatctgcacctacttccactcctatcccacgcacatgagttatgagcttctcattgtagaactgatcactatgcaccggccacgtga |
256 |
Q |
| |
|
|||||| ||||||| |||||| || ||||| || |||||| |||| || ||||| | |||||||||||| ||||| || | ||||| ||||||||||| |
|
|
| T |
48912599 |
gttgtgctccattccgttgcaccgacctccaccccaatcccatgcacctgtgttatcaacttctcattgtaaaactgttctccatgcatcggccacgtga |
48912500 |
T |
|
| Q |
257 |
tcatcggaacccctacactaa |
277 |
Q |
| |
|
|||| ||||||||| |||||| |
|
|
| T |
48912499 |
tcattggaacccctgcactaa |
48912479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 174 - 269
Target Start/End: Original strand, 48958086 - 48958181
Alignment:
| Q |
174 |
tgcacctacttccactcctatcccacgcacatgagttatgagcttctcattgtagaactgatcactatgcaccggccacgtgatcatcggaacccc |
269 |
Q |
| |
|
|||||| || ||||| || || || ||||||| |||||| | ||||||||||||||| || || | ||||||||||||||||||||| |||||||| |
|
|
| T |
48958086 |
tgcaccaacctccaccccaattcctcgcacattagttatcaacttctcattgtagaattgttctccatgcaccggccacgtgatcattggaacccc |
48958181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 199 - 277
Target Start/End: Original strand, 48974085 - 48974163
Alignment:
| Q |
199 |
cgcacatgagttatgagcttctcattgtagaactgatcactatgcaccggccacgtgatcatcggaacccctacactaa |
277 |
Q |
| |
|
||||| |||||||| | |||||| |||||||| || || |||||| |||||||||||||| ||||||||| |||||| |
|
|
| T |
48974085 |
cgcacctgagttatcaacttctcgttgtagaattgttcgtcatgcactggccacgtgatcattggaacccctgcactaa |
48974163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0536 (Bit Score: 56; Significance: 3e-23; HSPs: 3)
Name: scaffold0536
Description:
Target: scaffold0536; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 17 - 304
Target Start/End: Complemental strand, 1847 - 1560
Alignment:
| Q |
17 |
gaacaacatctttagcaatttttgctaactcttgggctttgtttctaatttggacagcttcatcacccccatccatcaaccttctcatagccttctttat |
116 |
Q |
| |
|
||||||||| |||||| |||||||| | |||||| ||| | ||| ||||| | ||||||||||| | ||||||||||| || | |||||||||||| |
|
|
| T |
1847 |
gaacaacatgtttagctatttttgcaatctcttgagctctacgtcttatttgaatggcttcatcaccactgtccatcaacctccttaaagccttctttat |
1748 |
T |
|
| Q |
117 |
aaaatctctcttcaccaactttttcatatctcgaaaagctgttgtgatccattcatctgcacctacttccactcctatcccacgcacatgagttatgagc |
216 |
Q |
| |
|
| ||||||| | | ||||| ||| || |||||||| | || | ||| ||||||||||| ||||||||||| |||||| |||| |||||||| | | |
|
|
| T |
1747 |
acgatctctccctattagcttttccatgtcccgaaaagcaatggtaagccactcatctgcaccgacttccactccaatcccatgcacctgagttatcaac |
1648 |
T |
|
| Q |
217 |
ttctcattgtagaactgatcactatgcaccggccacgtgatcatcggaacccctacactaatagcctccgtcacagagttccacccac |
304 |
Q |
| |
|
| || || ||||| ||||||||||| || ||||| |||||||| |||| ||| |||||| |||||| || | |||||||||||||| |
|
|
| T |
1647 |
gtttcgttatagaattgatcactatgtactggccatgtgatcattggaattcctgcactaacagcctcggttatagagttccacccac |
1560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0536; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 199 - 284
Target Start/End: Complemental strand, 6723 - 6638
Alignment:
| Q |
199 |
cgcacatgagttatgagcttctcattgtagaactgatcactatgcaccggccacgtgatcatcggaacccctacactaatagcctc |
284 |
Q |
| |
|
||||| || ||||| | ||| |||||||| || || || | ||||||||||||||||||||||||||||||| |||||| |||||| |
|
|
| T |
6723 |
cgcacctgtgttatcaacttttcattgtaaaattgttctccatgcaccggccacgtgatcatcggaacccctgcactaacagcctc |
6638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0536; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 173 - 277
Target Start/End: Complemental strand, 10731 - 10627
Alignment:
| Q |
173 |
ctgcacctacttccactcctatcccacgcacatgagttatgagcttctcattgtagaactgatcactatgcaccggccacgtgatcatcggaacccctac |
272 |
Q |
| |
|
||||||| |||||| | || ||||| ||||| || ||||| | |||||||||||| || || || | ||||| |||||||||||||| ||||||||| | |
|
|
| T |
10731 |
ctgcacccacttcccccccaatcccccgcacttgcgttatcaacttctcattgtaaaattgttctccatgcattggccacgtgatcattggaacccctgc |
10632 |
T |
|
| Q |
273 |
actaa |
277 |
Q |
| |
|
||||| |
|
|
| T |
10631 |
actaa |
10627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 174 - 277
Target Start/End: Complemental strand, 12483704 - 12483601
Alignment:
| Q |
174 |
tgcacctacttccactcctatcccacgcacatgagttatgagcttctcattgtagaactgatcactatgcaccggccacgtgatcatcggaacccctaca |
273 |
Q |
| |
|
|||||| |||||||| || ||||| ||||||| ||||||||| ||||||||||| || || |||| || ||||||||||||||||| |||| |||| || |
|
|
| T |
12483704 |
tgcaccgacttccacaccaatccctcgcacattagttatgagtttctcattgtaaaaatgttcaccgtgaaccggccacgtgatcattggaatccctgca |
12483605 |
T |
|
| Q |
274 |
ctaa |
277 |
Q |
| |
|
|||| |
|
|
| T |
12483604 |
ctaa |
12483601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 174 - 265
Target Start/End: Complemental strand, 12590409 - 12590318
Alignment:
| Q |
174 |
tgcacctacttccactcctatcccacgcacatgagttatgagcttctcattgtagaactgatcactatgcaccggccacgtgatcatcggaa |
265 |
Q |
| |
|
|||||| ||||||||||| || ||| |||||| |||||| | |||||||||||| || || |||| || || ||||| ||||||||||||| |
|
|
| T |
12590409 |
tgcaccaacttccactccaattccatgcacatcagttatcaacttctcattgtaaaaatgttcaccattcaatggccatgtgatcatcggaa |
12590318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 174 - 284
Target Start/End: Complemental strand, 12641718 - 12641608
Alignment:
| Q |
174 |
tgcacctacttccactcctatcccacgcacatgagttatgagcttctcattgtagaactgatcactatgcaccggccacgtgatcatcggaacccctaca |
273 |
Q |
| |
|
|||||| || ||||| || |||| |||||| |||||| ||||||||||| |||||||| || | ||||| |||||||||||||| |||| |||| || |
|
|
| T |
12641718 |
tgcacccacctccaccccaatccttcgcacaacagttatcagcttctcattatagaactgttctccttgcactggccacgtgatcattggaatccctgca |
12641619 |
T |
|
| Q |
274 |
ctaatagcctc |
284 |
Q |
| |
|
|||| |||||| |
|
|
| T |
12641618 |
ctaacagcctc |
12641608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 208 - 284
Target Start/End: Original strand, 13448339 - 13448415
Alignment:
| Q |
208 |
gttatgagcttctcattgtagaactgatcactatgcaccggccacgtgatcatcggaacccctacactaatagcctc |
284 |
Q |
| |
|
||||| || |||||||||||||| ||||| | ||| ||||||||||| ||||| ||||| || |||||| |||||| |
|
|
| T |
13448339 |
gttatcagtttctcattgtagaattgatctccatgaaccggccacgttatcattggaactcccgcactaacagcctc |
13448415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University