View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18197_high_23 (Length: 245)
Name: NF18197_high_23
Description: NF18197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18197_high_23 |
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Alignment Details
Target: chr8 (Bit Score: 212; Significance: 1e-116; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 38453420 - 38453193
Alignment:
| Q |
1 |
atcgaaagggaatatatgcaaagagttctgattgtggagaaaattagaccatattcagaagtaacacataataataagaaggaaaagcaagattagatgg |
100 |
Q |
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| T |
38453420 |
atcgaaatggaatatatgcaaagagttctgattgtggagaaaattagaccatattcagaagtaacacataataataagaaggaaaagcaagattagatgg |
38453321 |
T |
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| Q |
101 |
caattatctgactcttaatttgcaacttggcatcaggtaaattatttgattttttgaacaaaaaactaatatggaaaatttgatagagtattcatggtta |
200 |
Q |
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| T |
38453320 |
cgattatctgactcttaatttgcaacttggcatcaggtaaattatttgattttttgaacaaaaaactattatggaaaatttgatatagtattcatggtta |
38453221 |
T |
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| Q |
201 |
ccactattatcaccttttttcaattgtt |
228 |
Q |
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| T |
38453220 |
ccactattatcaccttttttcaattgtt |
38453193 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 103 - 217
Target Start/End: Original strand, 39849246 - 39849361
Alignment:
| Q |
103 |
attatctgactcttaatttgcaacttggcatcaggtaaattatttgattttttgaacaaa-aaactaatatggaaaatttgatagagtattcatggttac |
201 |
Q |
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| T |
39849246 |
attatatgaatcttaatctgcaacttggcatcaggtaaattatttgatcttttaaaaaattaaagtattatggaaaatttgatatagtattcgtggttac |
39849345 |
T |
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| Q |
202 |
cactattatcaccttt |
217 |
Q |
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| T |
39849346 |
cactattatcaccttt |
39849361 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 38633360 - 38633440
Alignment:
| Q |
1 |
atcgaaagggaatatatgcaaagagttctgattgtggagaaaattagaccatattcagaagtaacacataataataagaag |
81 |
Q |
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| T |
38633360 |
atcgaaagggaatgtatgcaaggagttctaattgtggagaaaattagacagtattcagaagtaacacataataataagaag |
38633440 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 5 - 77
Target Start/End: Original strand, 39849073 - 39849145
Alignment:
| Q |
5 |
aaagggaatatatgcaaagagttctgattgtggagaaaattagaccatattcagaagtaacacataataataa |
77 |
Q |
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| T |
39849073 |
aaagggaatatatgcaaggagttttaattgtggagaaaatcagaccgtattcagaagtaacacataataataa |
39849145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 103 - 150
Target Start/End: Original strand, 36952046 - 36952093
Alignment:
| Q |
103 |
attatctgactcttaatttgcaacttggcatcaggtaaattatttgat |
150 |
Q |
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| T |
36952046 |
attatctgaagcttaatttgcagcttggcatcaggtaaattatttgat |
36952093 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 105 - 150
Target Start/End: Original strand, 38633524 - 38633569
Alignment:
| Q |
105 |
tatctgactcttaatttgcaacttggcatcaggtaaattatttgat |
150 |
Q |
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| T |
38633524 |
tatctgaatcttaatctgcaacttggcaacaggtaaattacttgat |
38633569 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 40
Target Start/End: Original strand, 36951895 - 36951931
Alignment:
| Q |
4 |
gaaagggaatatatgcaaagagttctgattgtggaga |
40 |
Q |
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| T |
36951895 |
gaaagggaatatatgcaaggagttctaattgtggaga |
36951931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 11 - 93
Target Start/End: Complemental strand, 7045608 - 7045526
Alignment:
| Q |
11 |
aatatatgcaaagagttctgattgtggagaaaattagaccatattcagaagtaacacataataataagaaggaaaagcaagat |
93 |
Q |
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| T |
7045608 |
aatatatgcaaggagttctaattgtggagaaaattaaataggattcagaagtaacatataataataggaacaaaaagcaagat |
7045526 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 23 - 80
Target Start/End: Original strand, 44475299 - 44475356
Alignment:
| Q |
23 |
gagttctgattgtggagaaaattagaccatattcagaagtaacacataataataagaa |
80 |
Q |
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| T |
44475299 |
gagttctaattgtggagaaaattcgacagtattcaaaagtaacacataaaaataagaa |
44475356 |
T |
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