View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18197_high_26 (Length: 237)
Name: NF18197_high_26
Description: NF18197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18197_high_26 |
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Alignment Details
Target: chr8 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 36502374 - 36502144
Alignment:
| Q |
1 |
tacaattgcagctgctgaacagttttttnnnnnnn-tgtgtctgtctgtgccactacaacatggcgtaaatgagcaatttatgattgttttactgtgttg |
99 |
Q |
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| T |
36502374 |
tacaattgcagctgctgaacagttttttaaaaaaaatgtgtctgtctgtgccactacaacatggcgtaaatgagcaatttatgattgttttactgtgttg |
36502275 |
T |
|
| Q |
100 |
tctgagtttgaaattggtgcgcctatactcttatgagacatcaattaaactaaataagaaactcctgatgtattcttgtattatcataccatttactatt |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
36502274 |
tctgagtttgaaattggtgcgcctatactcttatgagacatcaattaaactaaataagaaactcgtgatgtattcttgtattatcataccatttactatt |
36502175 |
T |
|
| Q |
200 |
gnnnnnnngcttatacataatgtgatgatgt |
230 |
Q |
| |
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| ||||||||||||||||||||||| |
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| T |
36502174 |
gtttttttgcttatacataatgtgatgatgt |
36502144 |
T |
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