View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18197_high_8 (Length: 400)
Name: NF18197_high_8
Description: NF18197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18197_high_8 |
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Alignment Details
Target: chr5 (Bit Score: 361; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 1 - 381
Target Start/End: Original strand, 1346600 - 1346980
Alignment:
| Q |
1 |
aaaagctaattgcaagttaaaacggccaaacacaaatttccggtcagacacgacatcaaaaagccctcggcagaagatgaaattgacagcagacaaacga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1346600 |
aaaagctaattgcaagttaaaacggccaaacacaaatttccggtcagacacgacatcaaaaagccctcggcagaagatgaaattgacagcagacaaacga |
1346699 |
T |
|
| Q |
101 |
acaggttgatatattagcagaacaacacaccacaaaccaaacaaagattctgctaatccactcccaaactaaaaagctttgtttttaataagtcaatacg |
200 |
Q |
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||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
1346700 |
acaagttgatctattagcagaacaacacaccacaaaccaaacaaagattctgctaatccactcccaaactaaaaagctttgtttttaataagtcaatatg |
1346799 |
T |
|
| Q |
201 |
aggagctactagattttgaaaagagtttccatgctataacaacaaagcaagtttgggaaatatgctcaaaacatatgaagcagatccaatttaacgaaaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1346800 |
aggagctactagattttgaaaagagtttccatgctataacaacaaagcaagtttgggaaatatgctcaaaacatatgaagcagatccaatttaacgaaaa |
1346899 |
T |
|
| Q |
301 |
aggttgcaaggcttaaaacaagaatttgagctgattgaattttgcaaaaatgaaagtattcatgattttttacgaatggat |
381 |
Q |
| |
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||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
1346900 |
aggttacaaggcttaaaacaagaatttgagctgattgaattttgcaaagatgaaagtattcatgattttttacgaatggat |
1346980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 173 - 278
Target Start/End: Original strand, 19652915 - 19653021
Alignment:
| Q |
173 |
aaagctttgtttttaataagtcaatacgaggagctactagattttgaaaagagtttccatgctataacaacaaagcaagtttgggaaa-tatgctcaaaa |
271 |
Q |
| |
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||||||||||||| |||||||||||| ||| || ||| |||| |||| || | |||||||||||||||||||| || |||| ||| ||||| ||||| |
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| T |
19652915 |
aaagctttgttttaaataagtcaatatgagcagataccagatcttgagaaaaaattccatgctataacaacaaatgaaacttggaaaattatgcacaaaa |
19653014 |
T |
|
| Q |
272 |
catatga |
278 |
Q |
| |
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||||||| |
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| T |
19653015 |
catatga |
19653021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 102; Significance: 2e-50; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 229 - 381
Target Start/End: Complemental strand, 40036960 - 40036807
Alignment:
| Q |
229 |
ccatgctataacaacaaagcaagtttgggaaat-atgctcaaaacatatgaagcagatccaatttaacgaaaaaggttgcaaggcttaaaacaagaattt |
327 |
Q |
| |
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|||||||||||||| ||| |||| ||||||||| |||||||||||| ||| |||| ||||||||||||||||||||||||||| |||||||||| ||||| |
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| T |
40036960 |
ccatgctataacaataaaacaagcttgggaaattatgctcaaaacacatggagcaaatccaatttaacgaaaaaggttgcaagacttaaaacaacaattt |
40036861 |
T |
|
| Q |
328 |
gagctgattgaattttgcaaaaatgaaagtattcatgattttttacgaatggat |
381 |
Q |
| |
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|||||||||||||||| |||| ||||||| |||||||||||||||||||||||| |
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| T |
40036860 |
gagctgattgaattttacaaagatgaaagcattcatgattttttacgaatggat |
40036807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 224 - 373
Target Start/End: Complemental strand, 40031623 - 40031471
Alignment:
| Q |
224 |
agtttccatgctata--acaacaaagcaagtttgggaaat-atgctcaaaacatatgaagcagatccaatttaacgaaaaaggttgcaaggcttaaaaca |
320 |
Q |
| |
|
||||||||||||||| | | ||||||||| ||||||||| |||||||||||| ||| |||| ||||| ||||| ||||||||||||||| ||||||||| |
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| T |
40031623 |
agtttccatgctatataatagcaaagcaagcttgggaaattatgctcaaaacacatggagcaaatccagtttaaagaaaaaggttgcaagacttaaaaca |
40031524 |
T |
|
| Q |
321 |
agaatttgagctgattgaattttgcaaaaatgaaagtattcatgattttttac |
373 |
Q |
| |
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| |||||||||| |||||||||| |||| || ||| ||||| ||||||||||| |
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| T |
40031523 |
acaatttgagcttattgaattttacaaagataaaaatattcctgattttttac |
40031471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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