View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18197_low_10 (Length: 353)
Name: NF18197_low_10
Description: NF18197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18197_low_10 |
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| [»] chr4 (1 HSPs) |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 8 - 353
Target Start/End: Original strand, 33387920 - 33388265
Alignment:
| Q |
8 |
tgtcgaagaatatcagctgatttcagcgccctgtgattaacaaagttttcatagcaccaagatggatcctcattgttttgcttgtaggcatggtatacgt |
107 |
Q |
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||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33387920 |
tgtcgaacattatcagctgatttcagcgccctgtgattaacaaagttttcatagcaccaagatggatcctcattgttttgcttgtaggcatggtatacgt |
33388019 |
T |
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| Q |
108 |
tcaatagtgtgagatgatctccatcaatgtgtgcaaacctagcttttgcttcatctgcagcttcttgtgcatccctaggccgaataaagcaattgggtac |
207 |
Q |
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| T |
33388020 |
tcaatagtgtgagatgatctccatcaatgtgtgcaaacctagcttttgcttcatctgcagcttcttgtgcatccctaggccgaataaagcaattgggtac |
33388119 |
T |
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| Q |
208 |
cgataccatcgcagatattgaaagaatctcgtttgaacagttgaactctggactaacaataagcatctttgacatccgagggtccaatggaaactcactc |
307 |
Q |
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| T |
33388120 |
cgctaccatcgcagaaattgaaagaatctcgtttgaacagttgaactctggactaacaataagcatctttgacatctgagggtccaatggaaactcactc |
33388219 |
T |
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| Q |
308 |
ataatctcacccagctttgttaagttaccttcataatcaattgcac |
353 |
Q |
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| T |
33388220 |
ataatctcacccagctttgttaagttaccttcatcatcaattgcac |
33388265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 186; Significance: 1e-100; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 8 - 353
Target Start/End: Complemental strand, 20817184 - 20816839
Alignment:
| Q |
8 |
tgtcgaagaatatcagctgatttcagcgccctgtgattaacaaagttttcatagcaccaagatggatcctcattgttttgcttgtaggcatggtatacgt |
107 |
Q |
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| T |
20817184 |
tgtcgaacattatcagctgatttcaacaccctataattaataaagttgtcgtagcaccaagaagcatcctcgttgttttgcttgtaggcatgatatacat |
20817085 |
T |
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| Q |
108 |
tcaatagtgtgagatgatctccatcaatgtgtgcaaacctagcttttgcttcatctgcagcttcttgtgcatccctaggccgaataaagcaattgggtac |
207 |
Q |
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| T |
20817084 |
tcaagagtgtgagatgatctccatcaacgtgtataaacctagctttcgcttcatccgcagctatttgtgcctccttaggccggataaagcaattgggtac |
20816985 |
T |
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| Q |
208 |
cgataccatcgcagatattgaaagaatctcgtttgaacagttgaactctggactaacaataagcatctttgacatccgagggtccaatggaaactcactc |
307 |
Q |
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| T |
20816984 |
tgacagcatcgcagaaattgacagaatctcatttgaacagttgaactcagggctaacaacaagcatctttgacatctgagggtccaacggaaactcactc |
20816885 |
T |
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| Q |
308 |
ataatctcacccagctttgttaagttaccttcataatcaattgcac |
353 |
Q |
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| T |
20816884 |
ataatcttacccaactttgttaagttaccttcatcatccattgcac |
20816839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 100; Significance: 2e-49; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 214 - 341
Target Start/End: Original strand, 38779167 - 38779294
Alignment:
| Q |
214 |
catcgcagatattgaaagaatctcgtttgaacagttgaactctggactaacaataagcatctttgacatccgagggtccaatggaaactcactcataatc |
313 |
Q |
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||||||||| |||||||||||||| || |||||||||||||| |||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
38779167 |
catcgcagaaattgaaagaatctcattcgaacagttgaactcaggactaacaacaagcatctttgacatctgagggtccaatggaaactcactcataatc |
38779266 |
T |
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| Q |
314 |
tcacccagctttgttaagttaccttcat |
341 |
Q |
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| T |
38779267 |
tcaccaagctttgttaagttaccttcat |
38779294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 81 - 207
Target Start/End: Original strand, 38778622 - 38778748
Alignment:
| Q |
81 |
tgttttgcttgtaggcatggtatacgttcaatagtgtgagatgatctccatcaatgtgtgcaaacctagcttttgcttcatctgcagcttcttgtgcatc |
180 |
Q |
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||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| ||||||||||||| |||||||| ||||||| |||||| || |
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| T |
38778622 |
tgttttgcttgtaggcatggtatacattcaagagtgtgagatgatctccatcaatgtgtccaaacctagctttggcttcatccgcagctttttgtgcctc |
38778721 |
T |
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| Q |
181 |
cctaggccgaataaagcaattgggtac |
207 |
Q |
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| T |
38778722 |
cctaggccggataaagcaattgggtac |
38778748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 78
Target Start/End: Original strand, 38778443 - 38778513
Alignment:
| Q |
8 |
tgtcgaagaatatcagctgatttcagcgccctgtgattaacaaagttttcatagcaccaagatggatcctc |
78 |
Q |
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||||||| | ||||||||||||| |||||||| | |||||| ||||| || ||||||||||| | |||||| |
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| T |
38778443 |
tgtcgaacattatcagctgatttaagcgccctattattaacgaagttgtcgtagcaccaagaagcatcctc |
38778513 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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