View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18197_low_11 (Length: 309)
Name: NF18197_low_11
Description: NF18197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18197_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 279; Significance: 1e-156; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 13 - 291
Target Start/End: Original strand, 39227786 - 39228064
Alignment:
| Q |
13 |
catcaaactcattgtaataacctaacaaaaggtgtgtaagattagtaagatttccaagctcaaaaggtatgaaacctctcaaatcattacctgcaagaga |
112 |
Q |
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| T |
39227786 |
catcaaactcattgtaataacctaacaaaaggtgtgtaagattagtaagatttccaagctcaaaaggtatgaaacctctcaaatcattacctgcaagaga |
39227885 |
T |
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| Q |
113 |
caaatagttaagctgcaacatgttaccatattttgaaggaatttctccatagaaaaaatttcctccaaaattcaagtacttgagtttaggtaactcagtg |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39227886 |
caaatagttaagctgcaacatgttaccatattttgaaggaatttctccatagaaaaaatttcctccaaaattcaagtacttgagtttaggtaactcagtg |
39227985 |
T |
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| Q |
213 |
acaccaagagggagtgaacaattgaactcattattgtaagcatcaagaacttcaagctctttcaaatgagagaatttcc |
291 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39227986 |
acaccaagagggagtgaacaattgaactcattattgtaagcatcaagaacttcaagctctttcaaatgagagaatttcc |
39228064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 13 - 291
Target Start/End: Original strand, 25546985 - 25547263
Alignment:
| Q |
13 |
catcaaactcattgtaataacctaacaaaaggtgtgtaagattagtaagatttccaagctcaaaaggtatgaaacctctcaaatcattacctgcaagaga |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25546985 |
catcaaactcattgtaataacctaacaaaaggtgtgtaagattagtaagatttccaagctcaaaaggtatgaaacctctcaaatcattacctgcaagaga |
25547084 |
T |
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| Q |
113 |
caaatagttaagctgcaacatgttaccatattttgaaggaatttctccatagaaaaaatttcctccaaaattcaagtacttgagtttaggtaactcagtg |
212 |
Q |
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| T |
25547085 |
caaatagttaagctgcaacatgttaccatattttgaaggaatttctccatagaaaaaatttcctccaaaattcaagtacttgagtttaggtaactcagtg |
25547184 |
T |
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| Q |
213 |
acaccaagagggagtgaacaattgaactcattattgtaagcatcaagaacttcaagctctttcaaatgagagaatttcc |
291 |
Q |
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||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25547185 |
acaccaagaggtagtgaacaattgaactcattgttgtaagcatcaagaacttcaagctctttcaaatgagagaatttcc |
25547263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 62 - 127
Target Start/End: Complemental strand, 16733375 - 16733310
Alignment:
| Q |
62 |
atttccaagctcaaaaggtatgaaacctctcaaatcattacctgcaagagacaaatagttaagctg |
127 |
Q |
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||||||||||||| ||||| ||||| ||||||||||| || |||||||||||| | |||||||| |
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| T |
16733375 |
atttccaagctcactaggtaaaaaaccactcaaatcatttccagcaagagacaaaaaattaagctg |
16733310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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