View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18197_low_12 (Length: 307)
Name: NF18197_low_12
Description: NF18197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18197_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 244; Significance: 1e-135; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 288
Target Start/End: Complemental strand, 12182346 - 12182059
Alignment:
| Q |
1 |
gatggaagccagcaacatagtaagaaaaagtaaccctttggaattcattttgttatagcttattgtgaaactattgtattgatcgatgaaaatgaattgt |
100 |
Q |
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| T |
12182346 |
gatggaagccagcaacatagtaagaaaaagtaaccctttggaattcattttgttatagcttatcgtgaaactattgtattgatcgatgaaaatgaagtgt |
12182247 |
T |
|
| Q |
101 |
ctgaaagttatgtatttataggcaacatgagaaagaaatagaacaaaaaacattaaattccttcgttgacattaagtggatcattctcgagtagatttgt |
200 |
Q |
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| T |
12182246 |
ctgaaagttatgtatttataggcaacatgagaaagaaatagaacaaaaaacattaaattccttcgttgacattaagtggatcattctcgagtggatttgt |
12182147 |
T |
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| Q |
201 |
tcatcgaatttgtaacaatactgttattgctattattcaagcttaaatgcacttttgatcatcatgttagctttgctcagttggtagg |
288 |
Q |
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|||||||||||||||||||| |||||||||||||||||||| | |||||||||||||||| | || |||||||||||||||||||| |
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| T |
12182146 |
tcatcgaatttgtaacaatattgttattgctattattcaagttcaaatgcacttttgatctttccgtgagctttgctcagttggtagg |
12182059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 1 - 177
Target Start/End: Complemental strand, 12188351 - 12188175
Alignment:
| Q |
1 |
gatggaagccagcaacatagtaagaaaaagtaaccctttggaattcattttgttatagcttattgtgaaactattgtattgatcgatgaaaatgaattgt |
100 |
Q |
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| T |
12188351 |
gatggaagccagcaacatagtaagaaaaagtaaccctttggaattcattttcttatagcttattgtgaaactattgtattgatcgatgaaaatgaagtgt |
12188252 |
T |
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| Q |
101 |
ctgaaagttatgtatttataggcaacatgagaaagaaatagaacaaaaaacattaaattccttcgttgacattaagt |
177 |
Q |
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| T |
12188251 |
ctgaaagttatgtatttataggtaacatgagaaagaaatagaacaaaaaacattaaattccttcgttgacataaagt |
12188175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 2 - 173
Target Start/End: Complemental strand, 12175378 - 12175205
Alignment:
| Q |
2 |
atggaagccagcaacatagtaagaaaaagtaaccctttggaattcattttgttatagcttattgtgaaactattgtat--tgatcgatgaaaatgaattg |
99 |
Q |
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|||||||||| | ||||| ||||||||||||||||||||||||||||| ||||| |||| | |||||||||||||| ||||||||||||||||| || |
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| T |
12175378 |
atggaagccaagagcatagctagaaaaagtaaccctttggaattcattttcttataacttactttgaaactattgtatattgatcgatgaaaatgaagtg |
12175279 |
T |
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| Q |
100 |
tctgaaagttatgtatttataggcaacatgagaaagaaatagaacaaaaaacattaaattccttcgttgacatt |
173 |
Q |
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| T |
12175278 |
actgaaagttatgtatttataggcaagatgaggaagaaatagaacaaaaagcattaaattctttggttgacatt |
12175205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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