View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18197_low_19 (Length: 272)
Name: NF18197_low_19
Description: NF18197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18197_low_19 |
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Alignment Details
Target: chr4 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 257
Target Start/End: Original strand, 33388246 - 33388513
Alignment:
| Q |
1 |
accttcatcatcaattgcacctaagtaattcaacactt-----------attaaggtttcaggagcaggagggtccatgaagtcaaaatgaactaaatca |
89 |
Q |
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| T |
33388246 |
accttcatcatcaattgcacctaagtaattcaacacttccaaagcacgcattaaggtttcaggagcaggagggtccatgaagtcaaaatgaactaaatca |
33388345 |
T |
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| Q |
90 |
tctatacccaatttcttcaatgtaagaacagtgtttgcaagattagatctcaaaattccaggataggtctgcggctgaagatcattactgaaacttattt |
189 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
33388346 |
tctatacccaatttcttcaatgtaagaaccgtgtttgcaagattagatctcaaaatttcaggataggtctgcggctgaagatcattactgaaacttattt |
33388445 |
T |
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| Q |
190 |
tggtatagagtctatagcatttccccggttgagttcttccggcacgacctgatctctggtgtgcacta |
257 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33388446 |
cggtatagagtctatagcatttccccggttgagttcttccggcacgacctgatctctggtgtgcacta |
33388513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 156; Significance: 6e-83; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 42 - 257
Target Start/End: Original strand, 38779339 - 38779554
Alignment:
| Q |
42 |
aaggtttcaggagcaggagggtccatgaagtcaaaatgaactaaatcatctatacccaatttcttcaatgtaagaacagtgtttgcaagattagatctca |
141 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| |||||||||||||||| |
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| T |
38779339 |
aaggtttcaggggcaggagggtccatgaagtcaaaatgaactaaatcatctatacccagtttcttcaatgtaagaactgtgttggcaagattagatctca |
38779438 |
T |
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| Q |
142 |
aaattccaggataggtctgcggctgaagatcattactgaaacttattttggtatagagtctatagcatttccccggttgagttcttccggcacgacctga |
241 |
Q |
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| T |
38779439 |
aaatttcaggataggtctgcggctgaagatcattattgaaacttctttcggtataaagtctaaagcatttccccggctgagttcttccagcacgtccaga |
38779538 |
T |
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| Q |
242 |
tctctggtgtgcacta |
257 |
Q |
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||||||||||||||| |
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| T |
38779539 |
cctctggtgtgcacta |
38779554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 128; Significance: 3e-66; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 1 - 247
Target Start/End: Complemental strand, 20816858 - 20816601
Alignment:
| Q |
1 |
accttcatcatcaattgcacctaagtaattcaacactt-----------attaaggtttcaggagcaggagggtccatgaagtcaaaatgaactaaatca |
89 |
Q |
| |
|
|||||||||||| |||||||| |||||||||||||||| ||||||||||| || |||||||||||||| ||||||||||| |||||||| |
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| T |
20816858 |
accttcatcatccattgcacccaagtaattcaacacttccaaagcgcgcattaaggtttctggtgcaggagggtccataaagtcaaaatgtactaaatcg |
20816759 |
T |
|
| Q |
90 |
tctatacccaatttcttcaatgtaagaacagtgtttgcaagattagatctcaaaattccaggataggtctgcggctgaagatcattactgaaacttattt |
189 |
Q |
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|||||||||||||||||||| |||||||| ||||| || |||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| ||| |
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| T |
20816758 |
tctatacccaatttcttcaaagtaagaactgtgttggcgagattagatctcaaaatttcaggataggtctgcggctgaagatcattattgaaacttcttt |
20816659 |
T |
|
| Q |
190 |
tggtatagagtctatagcatttccccggttgagttcttccggcacgacctgatctctg |
247 |
Q |
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||||| |||||| |||||||||| ||||| |||||||| ||||| || |||||||| |
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| T |
20816658 |
ccgtataaagtctaaagcatttccctggttgtgttcttccagcacgcccagatctctg |
20816601 |
T |
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