View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18197_low_2 (Length: 493)

Name: NF18197_low_2
Description: NF18197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18197_low_2
NF18197_low_2
[»] chr8 (4 HSPs)
chr8 (89-404)||(29274504-29274819)
chr8 (412-486)||(29274851-29274925)
chr8 (25-69)||(29274439-29274483)
chr8 (303-347)||(35673393-35673437)
[»] chr3 (2 HSPs)
chr3 (97-248)||(44226006-44226156)
chr3 (311-352)||(27972591-27972632)
[»] scaffold0031 (1 HSPs)
scaffold0031 (118-249)||(95729-95861)
[»] chr7 (2 HSPs)
chr7 (93-168)||(2508124-2508198)
chr7 (364-404)||(44963222-44963262)
[»] chr5 (2 HSPs)
chr5 (304-353)||(6742541-6742590)
chr5 (360-404)||(6569892-6569936)
[»] chr4 (1 HSPs)
chr4 (303-352)||(28395614-28395667)
[»] chr2 (2 HSPs)
chr2 (307-351)||(45033361-45033405)
chr2 (304-352)||(45035155-45035203)


Alignment Details
Target: chr8 (Bit Score: 190; Significance: 1e-103; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 89 - 404
Target Start/End: Original strand, 29274504 - 29274819
Alignment:
Q  89 attggcaaaggataaatatattaaaaagaaaacaaagacatacaaagactgtggggacatatgacctgacccagatacaatctatatgtgaatatatcat 188  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||| ||| |||||||||||| ||| |||||||||||| |||||  |||||||  |    
T  29274504 attggcaaaggataaatatatttaaaagaaaacaaagacatacaaagattgttgggacatatgacatgatccagatacaatccatatgacaatatatagt 29274603  T
Q  189 gataaagcaaaacca-cctaatcaatcctaataaacaagcactcgtctcaagcgctacctagcacacatatagggatggaaattgttcttatgggagtat 287  Q
    |||||||||||| || ||||||||||||||| |||||||||||| |||||||||| ||||||| ||||||||||| || ||||||||||| |||||||||    
T  29274604 gataaagcaaaatcagcctaatcaatcctaacaaacaagcactcatctcaagcgcaacctagcgcacatataggggtgaaaattgttcttctgggagtat 29274703  T
Q  288 tagtaatgagagg--atattctctctaggaatcatcacaaagatagaaataaataaaagatatgaaaagtatataatgagtgtttcaatatatagagatt 385  Q
    |||||||||||||  ||||||||||||||||||||||||||||||||   |||||||| | |||||||||||||||||||| |||| ||||||| |||||    
T  29274704 tagtaatgagaggatatattctctctaggaatcatcacaaagataga---aaataaaaaacatgaaaagtatataatgagtatttctatatataaagatt 29274800  T
Q  386 aattggagtaactaactct 404  Q
    ||||||||||| |||||||    
T  29274801 aattggagtaattaactct 29274819  T

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Target: chr8; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 412 - 486
Target Start/End: Original strand, 29274851 - 29274925
Alignment:
Q  412 ctaacaaacatatcagtaactatagttgattaactatttagctaacatattgttggtttagcgtacggtcctatg 486  Q
    |||||||||| ||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  29274851 ctaacaaacacatccgtaactatagttgattagctatttagctaacatattgttggtttagcgtacggtcctatg 29274925  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 25 - 69
Target Start/End: Original strand, 29274439 - 29274483
Alignment:
Q  25 ttattcactatgtgtgtttttgctagtgcaataaggtacgaagtc 69  Q
    ||||| |||||||||| |||||||||||||||| |||||||||||    
T  29274439 ttatttactatgtgtgcttttgctagtgcaatatggtacgaagtc 29274483  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 303 - 347
Target Start/End: Original strand, 35673393 - 35673437
Alignment:
Q  303 attctctctaggaatcatcacaaagatagaaataaataaaagata 347  Q
    |||||||||| ||||||||||| ||||| |||| |||||||||||    
T  35673393 attctctctatgaatcatcacagagatataaatgaataaaagata 35673437  T

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Target: chr3 (Bit Score: 88; Significance: 4e-42; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 97 - 248
Target Start/End: Original strand, 44226006 - 44226156
Alignment:
Q  97 aggataaatatattaaaaagaaaacaaagacatacaaagactgtggggacatatgacctgacccagatacaatctatatgtgaatatatcatgataaagc 196  Q
    |||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| |||||| | ||||||| ||||| ||||| |||  ||||||||    
T  44226006 aggataaatatattaaaaagaaaacaaagacatacaaaaact-tggggacatatgacatgaccctggtacaatccatatgagaatacatcgcgataaagc 44226104  T
Q  197 aaaaccacctaatcaatcctaataaacaagcactcgtctcaagcgctaccta 248  Q
    |||||||||||||||||||||| |||||| |||| || |||||||| |||||    
T  44226105 aaaaccacctaatcaatcctaacaaacaaacacttgtttcaagcgcaaccta 44226156  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 311 - 352
Target Start/End: Complemental strand, 27972632 - 27972591
Alignment:
Q  311 taggaatcatcacaaagatagaaataaataaaagatatgaaa 352  Q
    ||||| |||||||||| |||||||| ||||||||||||||||    
T  27972632 taggagtcatcacaaatatagaaatgaataaaagatatgaaa 27972591  T

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Target: scaffold0031 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 118 - 249
Target Start/End: Original strand, 95729 - 95861
Alignment:
Q  118 aaacaaagacatacaaagactgtggggacatatgacctgacccagatacaatctatatgtgaatatatcatgataaagcaaaacca-cctaatcaatcct 216  Q
    ||||||||||||| |||||||  || ||||||| |||||| |||| ||||| | ||||   |||| ||| |||||||||||||||| ||||||||||| |    
T  95729 aaacaaagacatagaaagactagggagacatataacctgaaccaggtacaacccatatcgaaatacatcgtgataaagcaaaaccaccctaatcaatcgt 95828  T
Q  217 aataaacaagcactcgtctcaagcgctacctag 249  Q
    || |||||| ||| |||| ||||||| ||||||    
T  95829 aacaaacaaacacacgtcccaagcgcaacctag 95861  T

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Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 93 - 168
Target Start/End: Original strand, 2508124 - 2508198
Alignment:
Q  93 gcaaaggataaatatattaaaaagaaaacaaagacatacaaagactgtggggacatatgacctgacccagatacaa 168  Q
    |||||||| |||||||||||||| ||||  || |||||||||||||| |||||||| ||||||||||||| |||||    
T  2508124 gcaaaggaaaaatatattaaaaacaaaaacaaaacatacaaagactggggggacat-tgacctgacccaggtacaa 2508198  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 364 - 404
Target Start/End: Complemental strand, 44963262 - 44963222
Alignment:
Q  364 agtgtttcaatatatagagattaattggagtaactaactct 404  Q
    |||||| | ||||||||||||||||| ||||||||||||||    
T  44963262 agtgttcctatatatagagattaatttgagtaactaactct 44963222  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 304 - 353
Target Start/End: Complemental strand, 6742590 - 6742541
Alignment:
Q  304 ttctctctaggaatcatcacaaagatagaaataaataaaagatatgaaaa 353  Q
    ||||||||| || ||||||||||||||||||||||||||| |||| ||||    
T  6742590 ttctctctacgagtcatcacaaagatagaaataaataaaaaatatcaaaa 6742541  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 360 - 404
Target Start/End: Complemental strand, 6569936 - 6569892
Alignment:
Q  360 aatgagtgtttcaatatatagagattaattggagtaactaactct 404  Q
    |||||||||| | |||||||||||||| ||||| |||||||||||    
T  6569936 aatgagtgttcctatatatagagattagttggactaactaactct 6569892  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 303 - 352
Target Start/End: Original strand, 28395614 - 28395667
Alignment:
Q  303 attctctctaggaatcatcacaa----agatagaaataaataaaagatatgaaa 352  Q
    ||||||||||||| |||||||||    |||||||||| ||||||||||||||||    
T  28395614 attctctctaggagtcatcacaaagatagatagaaatgaataaaagatatgaaa 28395667  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 307 - 351
Target Start/End: Complemental strand, 45033405 - 45033361
Alignment:
Q  307 tctctaggaatcatcacaaagatagaaataaataaaagatatgaa 351  Q
    ||||||||| |||||||||||||  |||| |||||||||||||||    
T  45033405 tctctaggagtcatcacaaagatgcaaatgaataaaagatatgaa 45033361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 304 - 352
Target Start/End: Complemental strand, 45035203 - 45035155
Alignment:
Q  304 ttctctctaggaatcatcacaaagatagaaataaataaaagatatgaaa 352  Q
    |||||||||||| |||||||||||||  |||| |||||||||| |||||    
T  45035203 ttctctctaggagtcatcacaaagatgcaaatgaataaaagatttgaaa 45035155  T

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