View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18197_low_20 (Length: 266)
Name: NF18197_low_20
Description: NF18197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18197_low_20 |
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Alignment Details
Target: chr2 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 15 - 237
Target Start/End: Original strand, 41414320 - 41414537
Alignment:
| Q |
15 |
atatgttgctttgatgtcggtcttgtttgatagtactgctaacttgaatatttcccaaaaataaataaatatattatcattgtcatgcccaattcatagt |
114 |
Q |
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| T |
41414320 |
atatgttgctttgatgtcggtcttgtttgatagtactgctaacttgaatatttcccaataatatata----tattatcattttcatgcccaattcatagt |
41414415 |
T |
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| Q |
115 |
ggttgcaggaacttttcatgagacatttaatgtatctgatgtgttagaaagcaggttttgaatatgtaattttttcacttcttcgcatagacaattaata |
214 |
Q |
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| T |
41414416 |
ggttgcaggaacttttcatgagacatttaatgtatctgatgtgttagaaagcaggttttgaatatgtaa-tttttcacttcttcgcatagacaattaata |
41414514 |
T |
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| Q |
215 |
tgttgattatcgctattaaacta |
237 |
Q |
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||||||||||| ||||||||||| |
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| T |
41414515 |
tgttgattatctctattaaacta |
41414537 |
T |
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