View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18197_low_23 (Length: 247)
Name: NF18197_low_23
Description: NF18197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18197_low_23 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 247; Significance: 1e-137; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 1 - 247
Target Start/End: Complemental strand, 39227809 - 39227563
Alignment:
| Q |
1 |
taggttattacaatgagtttgatggtgaaattccacctcattttggtaaccttgttaatttagttcatcttgatcttgcaaactgtggtttgaaaggttc |
100 |
Q |
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| T |
39227809 |
taggttattacaatgagtttgatggtgaaattccacctcattttggtaaccttgttaatttagttcatcttgatcttgcaaactgtggtttgaaaggttc |
39227710 |
T |
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| Q |
101 |
aattccacatgagctaggaaaactttacaaactagacacacttttcttgcaaaccaatcaacttaatggttcaattccacctcaattagggaatcttagt |
200 |
Q |
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| T |
39227709 |
aattccacatgagctaggaaaactttacaaactagacacacttttcttgcaaaccaatcaacttaatggttcaattccacctcaattagggaatcttagt |
39227610 |
T |
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| Q |
201 |
agtttgaaatctcttgatatgtcaaacaatgagttaaatggaaacat |
247 |
Q |
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| T |
39227609 |
agtttgaaatctcttgatatgtcaaacaatgagttaaatggaaacat |
39227563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 247
Target Start/End: Complemental strand, 25547008 - 25546762
Alignment:
| Q |
1 |
taggttattacaatgagtttgatggtgaaattccacctcattttggtaaccttgttaatttagttcatcttgatcttgcaaactgtggtttgaaaggttc |
100 |
Q |
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| T |
25547008 |
taggttattacaatgagtttgatggtgaaattccacctcattttggtaaccttgttaatttacttcatcttgatcttgcaaactgtggtttgaaaggttc |
25546909 |
T |
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| Q |
101 |
aattccacatgagctaggaaaactttacaaactagacacacttttcttgcaaaccaatcaacttaatggttcaattccacctcaattagggaatcttagt |
200 |
Q |
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| T |
25546908 |
aattccacatgagctacgaaaactttacaaactagacacacttttcttgcaaaccaatcaacttaatggttcaattccacctcaattagggaatcttagt |
25546809 |
T |
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| Q |
201 |
agtttgaaatctcttgatatgtcaaacaatgagttaaatggaaacat |
247 |
Q |
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| T |
25546808 |
agtttgaaatctcttgatatgtcaaacaatgagttaaatggaaacat |
25546762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 90 - 218
Target Start/End: Original strand, 16733490 - 16733618
Alignment:
| Q |
90 |
ttgaaaggttcaattccacatgagctaggaaaactttacaaactagacacacttttcttgcaaaccaatcaacttaatggttcaattccacctcaattag |
189 |
Q |
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||||||||||||||||||| |||| |||| ||||| |||| ||||| |||||||||||||||| |||||||| | ||||| ||||||||| |||||| |
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| T |
16733490 |
ttgaaaggttcaattccacttgagttaggtcaacttaacaagctagatacacttttcttgcaaaaaaatcaactcactggttttattccacctgaattag |
16733589 |
T |
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| Q |
190 |
ggaatcttagtagtttgaaatctcttgat |
218 |
Q |
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| T |
16733590 |
gtaatttgagtagattgaatgctcttgat |
16733618 |
T |
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