View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18197_low_3 (Length: 475)
Name: NF18197_low_3
Description: NF18197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18197_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 451; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 451; E-Value: 0
Query Start/End: Original strand, 1 - 459
Target Start/End: Original strand, 30977994 - 30978452
Alignment:
| Q |
1 |
aaaaagtcctaattaaaatgcaagaaagttaaaacaaatatatctgaagttgcacatcatttgcagtactagctagtcactgaactatatatataaattt |
100 |
Q |
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| T |
30977994 |
aaaaagtcctaattaaaatgcaagaaagttaaaacaaatatatctgaagttgcacatcatttgcagtactagctagtcactgaactatatatataaattt |
30978093 |
T |
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| Q |
101 |
gtttgataaattgcaccttgtttgttacataactagctagagatgaagctccaaatctaacttttcctcttggtgtttaaacaaccctattcctaactcc |
200 |
Q |
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| T |
30978094 |
gtttgataaattgcaccttgattgttacataactagctagagatgaagctccaaatctaacttttcctcttggtgtttaaacaaccctattcctaactcc |
30978193 |
T |
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| Q |
201 |
aatgtaatgttttgctcattattcatcaaaacattgtgtttcttcacctcttcatagctcttgatgctcttactcatcatgatttcacttctttgaggat |
300 |
Q |
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| T |
30978194 |
aatgtaatgttttgctcattattcatcaaaacattgtgtttcttcacctcttcatagctcttgatgctcttactcatcatgatttcacttctttgaggat |
30978293 |
T |
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| Q |
301 |
ttaaaagaggaagagatagagaaggtgttaatcttggtttcttatcatcatggatagtatgaggtaaggaaggtgaaggtggagaagataaagagagata |
400 |
Q |
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| T |
30978294 |
ttaaaagaggaagagatagagaaggtgttaatcttggtttcttatcatcatggatagtatgaggtaaggaaggtgaaggtggagaagataaagagagata |
30978393 |
T |
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| Q |
401 |
aagtggagaagaacaaggagtagttgaggtaggggtagggtttggtttattattattag |
459 |
Q |
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| T |
30978394 |
aagtggagaagaacaaggagtagttgagctaggggtagggtttggtttattattattag |
30978452 |
T |
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