View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18197_low_4 (Length: 457)
Name: NF18197_low_4
Description: NF18197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18197_low_4 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 411; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 4 - 442
Target Start/End: Original strand, 24620663 - 24621101
Alignment:
| Q |
4 |
tccatactcttaacaacttccttaagccattttctcatagctgcttcttgagtttcaattgagatggtttgaaggtcatcaagagtcttattgaccagaa |
103 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24620663 |
tccatactcttaacaacttccttaaaccattttctcatagctgcttcttgagtttcaattgagatggtttgaaggtcatcaagagtcttattgaccagaa |
24620762 |
T |
|
| Q |
104 |
tttggggttatgtgtcttatcaaggtcatcaagagtcttatcaacttgcctggtcagtgtctattgttgcaagagctgctaagatgctgcagaatttggg |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24620763 |
tttggggttatgtgtcttatcaaggtcatcaagagtcttatcaactagcctggttagtgtctattgttgcaagagctgctaagatgctgcagaatttggg |
24620862 |
T |
|
| Q |
204 |
gttatgttttggtgcatcagctttggtcccttagccttgttccagccctgcgtcctaaggtactaagcgagtaagctttaggttaagtttggtattgctc |
303 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
24620863 |
gttatgttttggtgcatcagttttggtcccttagccttgttccagccctgcgtcctaaggtactaagcgagtaagctttaggttaagcttggtattgctc |
24620962 |
T |
|
| Q |
304 |
aaatatacgcttaatcatatttattttttctagttttgatcatgtcttctgaacttgtcccgtggtgtttgattcttggctacactcctgcctttgagca |
403 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24620963 |
aaatatacgcttaatcatatttattttttctagtttagatcatgtcttctgaacttgtcccctggtgtttgattcttggctacactcctgcctttgagca |
24621062 |
T |
|
| Q |
404 |
actaagcttttcattgtttaattctatatacaacttcat |
442 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24621063 |
actaagcttttcattgtttaattctatatacaacttcat |
24621101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 169 - 443
Target Start/End: Original strand, 24652944 - 24653221
Alignment:
| Q |
169 |
gttgcaagagctgctaagatgctgcagaatttggggttatgttttggtgcatcagctttggtcccttagccttgttccagccctgcgtcctaaggtacta |
268 |
Q |
| |
|
||||||||||||||||||||| || |||||| ||||||||| ||||| |||||||||||||||| ||||||| |||| |||| ||| ||||||| ||||| |
|
|
| T |
24652944 |
gttgcaagagctgctaagatgttgtagaattcggggttatgatttggcgcatcagctttggtcc-ttagcctcgttctagccatgcatcctaagatacta |
24653042 |
T |
|
| Q |
269 |
agcgagtaagctttaggttaagtttggtattgctcaaatatacgcttaatcatatttattt---tttctagttttgatcatgtcttctgaacttg-tccc |
364 |
Q |
| |
|
||||||| ||||| |||||||| |||||| |||||||||||||| | ||||||| || ||| |||||||||| |||||||||| || |||||| | || |
|
|
| T |
24653043 |
agcgagtgagcttcaggttaagcttggtaatgctcaaatatacgttgaatcataattttttatttttctagtttagatcatgtctcctaaacttggttcc |
24653142 |
T |
|
| Q |
365 |
gtggtgtttgattcttggctacactcctgcctttgagcaactaagcttttcattgtttaattctatatacaacttcatg |
443 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||| |||||||||||||||| |
|
|
| T |
24653143 |
ctggtgtttgattcttggctacactccttcctttgagcaactaagcttttcatagtttaattatatatacaacttcatg |
24653221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 151 - 325
Target Start/End: Original strand, 24613306 - 24613480
Alignment:
| Q |
151 |
gcctggtcagtgtctattgttgcaagagctgctaagatgctgcagaatttggg-gttatgttttggtgcatcagctttggtcccttagccttgttccagc |
249 |
Q |
| |
|
||||||||||| ||| ||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| |||||||| |
|
|
| T |
24613306 |
gcctggtcagtttctgttgctgcaagagctgctaagatgctgcagaatttgggtgttatgttttggtgcatcagctttggtcc-ttagcctcgttccagc |
24613404 |
T |
|
| Q |
250 |
cctgcgtcctaaggtactaagcgagtaagctttaggttaagtttggtattgctcaaatatacgcttaatcatattt |
325 |
Q |
| |
|
|||| ||||||||||||||||||||| ||||| |||||||| |||||| |||||||||||||||| |||||||||| |
|
|
| T |
24613405 |
cctgtgtcctaaggtactaagcgagtgagcttcaggttaagcttggtaatgctcaaatatacgctaaatcatattt |
24613480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 366 - 442
Target Start/End: Original strand, 24614161 - 24614237
Alignment:
| Q |
366 |
tggtgtttgattcttggctacactcctgcctttgagcaactaagcttttcattgtttaattctatatacaacttcat |
442 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||| ||||||||||| || |||||||| |||||| |||||||| |
|
|
| T |
24614161 |
tggtgtttgattcttggctacaatcctgcctttgagctactaagcttttgatcgtttaattttatatataacttcat |
24614237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 328 - 360
Target Start/End: Original strand, 24613498 - 24613530
Alignment:
| Q |
328 |
tttttctagttttgatcatgtcttctgaacttg |
360 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| |
|
|
| T |
24613498 |
tttttctagtttagatcatgtcttctgaacttg |
24613530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University