View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18197_low_5 (Length: 426)
Name: NF18197_low_5
Description: NF18197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18197_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 366; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 18 - 416
Target Start/End: Complemental strand, 40093704 - 40093306
Alignment:
| Q |
18 |
attggttagtaccaaaaaacatttttcatatagtggcattcttttaatttgaaattccataacttatatcaagggaaacaataaattgaaaattaaatta |
117 |
Q |
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||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40093704 |
attggttagtagcaaaaaacatttttcatatagtggcgttcttttaatttgaaattccataacttatatcaagggaaacaataaattgaaaattaaatta |
40093605 |
T |
|
| Q |
118 |
ccttgtaccaaatcaatggttgtttcttagggaaagtagtctttgaattccacgctccggaacttccactagagagacctaaatcttcaccttttaggcc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40093604 |
ccttgtaccaaatcaatggttgtttcttagggaaagtagtctttgaattccacgctccggaacttccactagagagacctaaatcttcaccttttaggcc |
40093505 |
T |
|
| Q |
218 |
aacctgtatcaaaagaattaactccattaactatgtaagactaataaatagtcttcgatcaaaagtgaagactgacctgatatgtccacttccgagagga |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40093504 |
aacctgtatcaaaagaattaactccattaactatgtaagactaacaaatagtcttcgatcaaaagtgaagactgacctgatatgtccacttccgagagga |
40093405 |
T |
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| Q |
318 |
gagatcaagagtcttgttgccattcttcaaacctttcaatatcactggaccggtgatccccgctccccatgtgtcnnnnnnngctccatagttctgatg |
416 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
40093404 |
gagatcaagagtcttgttgccattcttcaaacctttcaatatcactggaccggtgatccccgctccccatgtgtcaaaaaaagctccatagttctgatg |
40093306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 18 - 416
Target Start/End: Complemental strand, 40063073 - 40062654
Alignment:
| Q |
18 |
attggttagtaccaaaaaacatttttcatatagtggcattcttttaatttgaaattccataacttatatcaagggaaacaataaattgaaaattaaatta |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| |
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| T |
40063073 |
attggttagtaccaaaaaacatttttcatatagtggcattcttttaatttgaaattccataacttatataaagggaaacaataaattgaaaataaaatta |
40062974 |
T |
|
| Q |
118 |
ccttgtaccaaatcaatggttgtttcttagggaaagtagtctttgaattccacgctccggaacttccactagagagacctaaatcttcaccttttaggcc |
217 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||| || ||| ||||| || ||||||||||||| || |||||||||||||||||||||||||| |
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| T |
40062973 |
ccttgtaccaaatcaatggttgattcttagggaaagtagactgtgagttccaaccttcggaacttccactggacagacctaaatcttcaccttttaggcc |
40062874 |
T |
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| Q |
218 |
aacctgtatcaaaagaattaactccattaactat---------gtaagactaataaat------------agtcttcgatcaaaagtgaagactgacctg |
296 |
Q |
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| T |
40062873 |
aacctgtatcaatagaattaactccattaacaatcaatctccattaagactaataaatagtctttgatcaagtctttgatcaaaagttaagactgacctg |
40062774 |
T |
|
| Q |
297 |
atatgtccacttccgagaggagagatcaagagtcttgttgccattcttcaaacctttcaatatcactggaccggtgatccccgctccccatgtgtcnnnn |
396 |
Q |
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||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| |||| |
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| T |
40062773 |
atatgtccacttctgagaggagagatcaagagtgttgttgccattcttcaaacctttcaatgttactggaccggtgatccccgctccccatctgtcaaaa |
40062674 |
T |
|
| Q |
397 |
nnngctccatagttctgatg |
416 |
Q |
| |
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||||||||||||||||| |
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| T |
40062673 |
aaagctccatagttctgatg |
40062654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 18 - 416
Target Start/End: Complemental strand, 40081424 - 40081003
Alignment:
| Q |
18 |
attggttagtaccaaaaaa-catttttcatatagtggcattcttttaatttgaaattccataacttatatcaagggaaacaataaattgaaaattaaatt |
116 |
Q |
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||||||||||| ||||||| ||||||||||||||||||||| ||||||||||||||| | |||||||||||||||||||||||||||||||| ||| | |
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| T |
40081424 |
attggttagtagcaaaaaaacatttttcatatagtggcatttccttaatttgaaattcccttacttatatcaagggaaacaataaattgaaaataaaact |
40081325 |
T |
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| Q |
117 |
accttgtaccaaatcaatggttgtttcttagggaaagtagtctttgaattccacgctccggaacttccactagagagacctaaatcttcaccttttaggc |
216 |
Q |
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||||||||||||| ||||||||| ||||||||| |||||| || |||||||||| |||| |||||||||||||| |||||||||||||| |||||||||| |
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| T |
40081324 |
accttgtaccaaaccaatggttggttcttagggtaagtagactgtgaattccaccctccagaacttccactagacagacctaaatcttcgccttttaggc |
40081225 |
T |
|
| Q |
217 |
caacctgtatcaaaagaattaactccattaactatgt---------------------aagactaataaatagtcttcgatc-aaaagtgaagactgacc |
294 |
Q |
| |
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||| ||||||| ||| |||||||||||||||| |||| |||| ||||||||||| ||||||| |||| | |||| ||||| |
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| T |
40081224 |
caatctgtatcgaaaaaattaactccattaacaatgtattccattaaagtgataaagaaagaataataaatagttttcgatcaaaaatttaagattgacc |
40081125 |
T |
|
| Q |
295 |
tgatatgtccacttccgagaggagagatcaagagtcttgttgccattcttcaaacctttcaatatcactggaccggtgatccccgctccccatgtgtcnn |
394 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| |||||| |||||| |
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| T |
40081124 |
tgatatgtccacttccgagaggagagatcaagagtgttgttgccattcttcaaacctttcaatatcacgggaccggtgatccctgctcccactgtgtcaa |
40081025 |
T |
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| Q |
395 |
nnnnngctccatagttctgatg |
416 |
Q |
| |
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||||||||||||||||| |
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| T |
40081024 |
aaaaggctccatagttctgatg |
40081003 |
T |
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