View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18197_low_8 (Length: 406)

Name: NF18197_low_8
Description: NF18197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18197_low_8
NF18197_low_8
[»] chr4 (37 HSPs)
chr4 (119-290)||(37728493-37728666)
chr4 (297-389)||(37729634-37729726)
chr4 (119-267)||(37727721-37727869)
chr4 (122-271)||(13509290-13509440)
chr4 (122-286)||(31600917-31601083)
chr4 (129-286)||(26421561-26421719)
chr4 (119-286)||(1290126-1290296)
chr4 (154-300)||(49306764-49306911)
chr4 (119-287)||(12129625-12129796)
chr4 (127-286)||(1835038-1835200)
chr4 (215-286)||(1963199-1963272)
chr4 (162-284)||(31599794-31599919)
chr4 (162-286)||(50909643-50909771)
chr4 (154-286)||(49307991-49308124)
chr4 (127-272)||(10448197-10448342)
chr4 (154-286)||(19750538-19750672)
chr4 (154-286)||(19789134-19789268)
chr4 (197-291)||(27257966-27258062)
chr4 (119-288)||(8155739-8155910)
chr4 (162-286)||(8757678-8757804)
chr4 (210-276)||(50909287-50909353)
chr4 (151-267)||(46638685-46638802)
chr4 (151-291)||(10470544-10470687)
chr4 (131-290)||(1289096-1289258)
chr4 (214-286)||(1964465-1964539)
chr4 (198-291)||(8758844-8758940)
chr4 (214-286)||(17382996-17383069)
chr4 (162-286)||(35934347-35934472)
chr4 (162-287)||(35935504-35935632)
chr4 (215-291)||(54110653-54110728)
chr4 (244-290)||(55603585-55603632)
chr4 (162-271)||(21178016-21178126)
chr4 (183-286)||(10447009-10447116)
chr4 (242-286)||(2193505-2193549)
chr4 (122-186)||(2412850-2412914)
chr4 (214-291)||(3927664-3927743)
chr4 (211-263)||(21539092-21539144)
[»] chr8 (40 HSPs)
chr8 (151-290)||(11282007-11282149)
chr8 (122-267)||(30335663-30335809)
chr8 (122-286)||(30336432-30336599)
chr8 (127-291)||(24359807-24359972)
chr8 (122-267)||(43661754-43661900)
chr8 (183-286)||(5514263-5514367)
chr8 (168-291)||(32207302-32207426)
chr8 (214-291)||(8388462-8388539)
chr8 (151-267)||(11283169-11283286)
chr8 (127-278)||(2379860-2380010)
chr8 (127-291)||(22221300-22221467)
chr8 (127-291)||(22227642-22227809)
chr8 (130-286)||(43661268-43661427)
chr8 (119-286)||(10006347-10006517)
chr8 (119-286)||(10007691-10007861)
chr8 (122-290)||(2378863-2379030)
chr8 (162-267)||(24123869-24123975)
chr8 (162-291)||(30570227-30570358)
chr8 (217-288)||(29968364-29968436)
chr8 (216-291)||(1823550-1823627)
chr8 (216-291)||(1857995-1858072)
chr8 (162-286)||(5513985-5514111)
chr8 (162-271)||(24122902-24123012)
chr8 (197-288)||(24361199-24361292)
chr8 (162-271)||(45114488-45114597)
chr8 (162-286)||(29043401-29043528)
chr8 (162-268)||(1824049-1824156)
chr8 (162-268)||(1858494-1858601)
chr8 (214-286)||(11287779-11287853)
chr8 (127-286)||(22220391-22220553)
chr8 (144-291)||(40471100-40471249)
chr8 (162-271)||(18978039-18978149)
chr8 (123-275)||(40469356-40469509)
chr8 (215-290)||(8389714-8389791)
chr8 (226-291)||(12353396-12353462)
chr8 (162-271)||(18970930-18971040)
chr8 (219-286)||(36249555-36249624)
chr8 (214-271)||(3208206-3208263)
chr8 (195-267)||(12351945-12352018)
chr8 (161-286)||(18979090-18979218)
[»] chr5 (30 HSPs)
chr5 (131-286)||(22940563-22940720)
chr5 (127-287)||(42195136-42195297)
chr5 (122-233)||(16650050-16650162)
chr5 (127-291)||(24332911-24333077)
chr5 (122-286)||(16650786-16650953)
chr5 (119-286)||(25523072-25523242)
chr5 (162-286)||(2186774-2186900)
chr5 (119-291)||(19752910-19753084)
chr5 (151-271)||(42196160-42196281)
chr5 (162-291)||(28539791-28539922)
chr5 (162-284)||(36486459-36486584)
chr5 (212-290)||(1016885-1016965)
chr5 (119-286)||(18486830-18487000)
chr5 (214-286)||(20214199-20214272)
chr5 (119-250)||(25524026-25524158)
chr5 (162-286)||(28538679-28538806)
chr5 (170-291)||(21835039-21835162)
chr5 (119-291)||(18485136-18485318)
chr5 (215-272)||(1015503-1015560)
chr5 (215-289)||(38834087-38834162)
chr5 (215-286)||(21834944-21835016)
chr5 (127-269)||(25056316-25056460)
chr5 (119-290)||(2686329-2686505)
chr5 (211-291)||(33158096-33158178)
chr5 (213-271)||(1796074-1796132)
chr5 (162-271)||(36485320-36485430)
chr5 (214-271)||(19754154-19754211)
chr5 (217-270)||(34893686-34893739)
chr5 (215-271)||(7311610-7311666)
chr5 (162-286)||(33160258-33160384)
[»] chr1 (38 HSPs)
chr1 (124-291)||(43378646-43378815)
chr1 (122-291)||(52274966-52275138)
chr1 (122-286)||(24422803-24422970)
chr1 (127-291)||(39153053-39153219)
chr1 (151-286)||(51684369-51684507)
chr1 (162-290)||(39151930-39152061)
chr1 (162-291)||(45157180-45157311)
chr1 (151-286)||(51685725-51685863)
chr1 (162-290)||(43058785-43058915)
chr1 (122-263)||(43377748-43377890)
chr1 (119-286)||(36613832-36614002)
chr1 (162-287)||(45156051-45156179)
chr1 (151-284)||(46066530-46066663)
chr1 (119-291)||(11436040-11436215)
chr1 (127-291)||(35594215-35594380)
chr1 (122-291)||(24426007-24426178)
chr1 (151-267)||(30249450-30249567)
chr1 (162-289)||(40384724-40384855)
chr1 (162-290)||(45149941-45150072)
chr1 (131-286)||(11437139-11437297)
chr1 (119-290)||(50680331-50680504)
chr1 (127-286)||(35595128-35595291)
chr1 (162-291)||(39698561-39698692)
chr1 (119-291)||(37526806-37526980)
chr1 (162-286)||(31194058-31194183)
chr1 (119-286)||(39222401-39222572)
chr1 (122-271)||(14999304-14999450)
chr1 (122-290)||(52276094-52276265)
chr1 (183-267)||(7675451-7675536)
chr1 (119-204)||(39221402-39221487)
chr1 (162-286)||(45148584-45148710)
chr1 (212-271)||(7674547-7674605)
chr1 (240-286)||(41364832-41364879)
chr1 (162-268)||(43059977-43060084)
chr1 (162-286)||(39699738-39699864)
chr1 (214-290)||(7983049-7983126)
chr1 (162-235)||(30248168-30248241)
chr1 (127-208)||(46525737-46525817)
[»] chr3 (40 HSPs)
chr3 (122-286)||(8456481-8456647)
chr3 (122-267)||(23769881-23770026)
chr3 (119-286)||(12700178-12700346)
chr3 (162-286)||(19984852-19984979)
chr3 (162-291)||(54986978-54987108)
chr3 (123-289)||(23770339-23770508)
chr3 (151-291)||(46721180-46721323)
chr3 (131-286)||(7758405-7758563)
chr3 (151-286)||(46719944-46720082)
chr3 (162-290)||(7267643-7267773)
chr3 (157-286)||(534502-534634)
chr3 (119-286)||(47614188-47614358)
chr3 (162-291)||(54540761-54540893)
chr3 (215-286)||(51037539-51037611)
chr3 (214-286)||(22776836-22776910)
chr3 (198-291)||(49398125-49398220)
chr3 (127-290)||(51347267-51347433)
chr3 (214-291)||(12703524-12703602)
chr3 (127-286)||(19986007-19986170)
chr3 (214-291)||(52104479-52104554)
chr3 (214-290)||(7268851-7268928)
chr3 (122-286)||(40426709-40426877)
chr3 (122-286)||(29931229-29931396)
chr3 (199-291)||(29932707-29932801)
chr3 (122-286)||(29980383-29980550)
chr3 (199-291)||(29981861-29981955)
chr3 (141-229)||(46492967-46493055)
chr3 (162-269)||(49216269-49216377)
chr3 (214-288)||(34940211-34940286)
chr3 (214-286)||(51038814-51038888)
chr3 (214-267)||(55192019-55192072)
chr3 (215-259)||(54654331-54654375)
chr3 (198-285)||(24516464-24516554)
chr3 (243-286)||(53901441-53901484)
chr3 (162-259)||(8875938-8876036)
chr3 (244-290)||(39844251-39844299)
chr3 (240-290)||(47610630-47610682)
chr3 (119-208)||(47615505-47615594)
chr3 (122-291)||(54539753-54539924)
chr3 (244-289)||(39843051-39843098)
[»] chr2 (30 HSPs)
chr2 (122-286)||(26545452-26545619)
chr2 (119-286)||(13030295-13030462)
chr2 (122-291)||(11257620-11257791)
chr2 (128-291)||(22587892-22588056)
chr2 (154-286)||(18300688-18300820)
chr2 (119-268)||(18869090-18869242)
chr2 (122-286)||(26544152-26544318)
chr2 (122-268)||(11258742-11258889)
chr2 (119-286)||(18905916-18906085)
chr2 (119-291)||(22848189-22848364)
chr2 (211-283)||(24476865-24476937)
chr2 (240-291)||(21837305-21837356)
chr2 (214-276)||(32739638-32739700)
chr2 (151-259)||(11996739-11996848)
chr2 (127-271)||(18797267-18797412)
chr2 (162-270)||(22587522-22587630)
chr2 (154-286)||(18299376-18299511)
chr2 (119-286)||(28617926-28618094)
chr2 (214-286)||(36449781-36449855)
chr2 (163-291)||(802563-802693)
chr2 (213-271)||(18868944-18869002)
chr2 (240-286)||(21837073-21837119)
chr2 (243-300)||(8535709-8535766)
chr2 (162-286)||(7899853-7899980)
chr2 (216-290)||(36450947-36451022)
chr2 (127-290)||(7898690-7898855)
chr2 (213-292)||(13567969-13568050)
chr2 (224-286)||(11938822-11938886)
chr2 (211-259)||(810802-810850)
chr2 (162-253)||(41878132-41878224)
[»] chr7 (17 HSPs)
chr7 (122-271)||(31659643-31659793)
chr7 (164-286)||(21505419-21505542)
chr7 (119-291)||(7500453-7500627)
chr7 (119-276)||(47369796-47369954)
chr7 (119-272)||(22629505-22629659)
chr7 (119-271)||(18372385-18372538)
chr7 (119-286)||(18371427-18371597)
chr7 (162-290)||(42886257-42886388)
chr7 (127-290)||(6618208-6618372)
chr7 (119-286)||(7501780-7501950)
chr7 (127-286)||(22630388-22630550)
chr7 (127-286)||(43899451-43899610)
chr7 (214-291)||(11662575-11662654)
chr7 (151-286)||(3227554-3227692)
chr7 (162-284)||(14999126-14999249)
chr7 (214-271)||(5111637-5111694)
chr7 (219-271)||(20163585-20163637)
[»] scaffold0019 (2 HSPs)
scaffold0019 (154-286)||(60093-60228)
scaffold0019 (154-286)||(61422-61557)
[»] chr6 (13 HSPs)
chr6 (163-286)||(16704469-16704595)
chr6 (162-289)||(1829574-1829704)
chr6 (128-286)||(27437831-27437992)
chr6 (154-286)||(6842246-6842381)
chr6 (119-286)||(7314883-7315052)
chr6 (162-268)||(26574642-26574748)
chr6 (170-291)||(3333005-3333129)
chr6 (214-286)||(30495722-30495794)
chr6 (162-288)||(5658757-5658886)
chr6 (162-271)||(10785884-10785994)
chr6 (119-286)||(7316222-7316392)
chr6 (214-291)||(1828737-1828816)
chr6 (214-291)||(29473075-29473154)
[»] scaffold0003 (1 HSPs)
scaffold0003 (128-286)||(49370-49531)
[»] scaffold0321 (1 HSPs)
scaffold0321 (210-286)||(18731-18809)
[»] scaffold0302 (2 HSPs)
scaffold0302 (214-286)||(17473-17547)
scaffold0302 (162-286)||(18747-18874)
[»] scaffold0586 (2 HSPs)
scaffold0586 (162-286)||(8998-9123)
scaffold0586 (183-290)||(6342-6452)
[»] scaffold1303 (1 HSPs)
scaffold1303 (154-286)||(1442-1577)
[»] scaffold0369 (1 HSPs)
scaffold0369 (215-291)||(13191-13267)
[»] scaffold2034 (2 HSPs)
scaffold2034 (127-286)||(236-397)
scaffold2034 (214-267)||(1002-1055)
[»] scaffold0320 (1 HSPs)
scaffold0320 (119-253)||(19526-19661)
[»] scaffold0186 (1 HSPs)
scaffold0186 (225-286)||(23084-23145)
[»] scaffold0049 (1 HSPs)
scaffold0049 (170-291)||(7394-7518)
[»] scaffold0059 (2 HSPs)
scaffold0059 (162-276)||(3690-3805)
scaffold0059 (211-286)||(4751-4827)
[»] scaffold0112 (1 HSPs)
scaffold0112 (214-286)||(37151-37224)
[»] scaffold0294 (1 HSPs)
scaffold0294 (154-286)||(5401-5536)
[»] scaffold0045 (1 HSPs)
scaffold0045 (215-267)||(49109-49161)


Alignment Details
Target: chr4 (Bit Score: 118; Significance: 4e-60; HSPs: 37)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 119 - 290
Target Start/End: Original strand, 37728493 - 37728666
Alignment:
Q  119 ttaattatttacacacatggcatgccacacatgcgttgactttgtcaaaattgactaaaaagatcaaagatgcagagaggctaaatcttaaa-ggtcaaa 217  Q
    ||||||||||||  ||||| |||||||||||||||||||||| ||||||||||||||||| ||||||||||||| ||| ||||||||||||| |||||||    
T  37728493 ttaattatttacggacatgacatgccacacatgcgttgacttggtcaaaattgactaaaaggatcaaagatgcaaagaagctaaatcttaaagggtcaaa 37728592  T
Q  218 attgtaatttttgtacatagaaggccaaaattgcaactttttaaaagttagg-ggaaaaagtgcactttaacct 290  Q
    |||||| ||||||||||||| ||||||||||||||||||||||||||||||| ||||||| |||||||||||||    
T  37728593 attgtagtttttgtacataggaggccaaaattgcaactttttaaaagttaggaggaaaaaatgcactttaacct 37728666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 297 - 389
Target Start/End: Original strand, 37729634 - 37729726
Alignment:
Q  297 tactgatttttattaagaaacgttattttgaaataaaataaaataaatagttcaccaaaagggactcttactctatcaaattatactcatatt 389  Q
    |||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||    
T  37729634 tactgatttttatttaaaaacgttattttgaaataaaataaaataaatagttcaccaaaagggactcttactctatcaatttatattcatatt 37729726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 119 - 267
Target Start/End: Complemental strand, 37727869 - 37727721
Alignment:
Q  119 ttaattatttacacacatggcatgccacacatgcgttgactttgtcaaaattgactaaaaagatcaaagatgcagagaggctaaatcttaa-aggtcaaa 217  Q
    |||||||||||||||  |||||||| ||||||||||||| || ||||||||||||||||| || ||||||| || |||| |||||||||||  ||| |||    
T  37727869 ttaattatttacacatgtggcatgcaacacatgcgttgatttggtcaaaattgactaaaatgaccaaagatacaaagagactaaatcttaaggggttaaa 37727770  T
Q  218 attgtaatttttgtacatagaaggccaaaattgcaactttttaaaagtta 267  Q
    |||||| |||||||| ||| |  ||||||||| |||||||||||||||||    
T  37727769 attgtagtttttgtatata-agagccaaaattacaactttttaaaagtta 37727721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 122 - 271
Target Start/End: Original strand, 13509290 - 13509440
Alignment:
Q  122 attatttacacacatggcatgccacacatgcgttgactttgtcaaaattgactaaaaagatcaaagatgcagagaggctaaatcttaaagg-tcaaaatt 220  Q
    ||||||||||||  ||||||||||||||||||||||||| |||||||||| | |||| || ||||| |||| || ||||||||||||  || ||||||||    
T  13509290 attatttacacatgtggcatgccacacatgcgttgacttggtcaaaattggccaaaaggagcaaaggtgcaaaggggctaaatcttaggggatcaaaatt 13509389  T
Q  221 gtaatttttgtacatagaaggccaaaattgcaactttttaaaagttagggg 271  Q
    ||| ||||  ||| | |  |||||||||||||| |||||||||||||||||    
T  13509390 gtagttttcatacttggggggccaaaattgcaattttttaaaagttagggg 13509440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 122 - 286
Target Start/End: Original strand, 31600917 - 31601083
Alignment:
Q  122 attatttacacacatggcatgccacacatgcgttgactttgtcaaaattgactaaaaagatcaaagatgcagagaggctaaatcttaaagg-tcaaaatt 220  Q
    |||| |||||||| |||||||||||| | || |||||   |||||||||||| |||| |||||||| |||| |  ||||||||||||| || ||||||||    
T  31600917 attaattacacacgtggcatgccacataggcattgaccg-gtcaaaattgacaaaaaggatcaaagttgcaaatgggctaaatcttaaggggtcaaaatt 31601015  T
Q  221 gtaatttttgtacatagaaggccaaaattgcaactttttaaaagtt--aggggaaaaagtgcacttta 286  Q
    ||| ||||||||| |||  || ||||||||||| ||||||||||||  ||||||||||||||||||||    
T  31601016 gtagtttttgtacttagggggtcaaaattgcaagtttttaaaagttagaggggaaaaagtgcacttta 31601083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 129 - 286
Target Start/End: Original strand, 26421561 - 26421719
Alignment:
Q  129 acacacatggcatgccacacatgcgttgactttgtcaaaattgactaaaaagatcaaagatgcagagaggctaaatcttaaagg-tcaaaattgtaattt 227  Q
    |||||| ||||||||||| || ||||||||| | | |||||||||||||| |||||||  ||||  | ||||||||||||| || ||||||||||| |||    
T  26421561 acacacgtggcatgccacgcaggcgttgactattttaaaattgactaaaatgatcaaatttgcaatg-ggctaaatcttaaggggtcaaaattgtagttt 26421659  T
Q  228 ttgtacatagaaggccaaaattgcaactttttaaaagttag-gggaaaaagtgcacttta 286  Q
    |||||| ||| ||| ||||||||||| ||||| |||||||| ||| ||||||||||||||    
T  26421660 ttgtacttaggaggtcaaaattgcaagtttttgaaagttagaggggaaaagtgcacttta 26421719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 119 - 286
Target Start/End: Original strand, 1290126 - 1290296
Alignment:
Q  119 ttaattatttacacacatggcatgccacacatgcgttgactttgtcaaaattgactaaaaagatcaaagatgcagagaggctaaatcttaaaggtc-aaa 217  Q
    ||||||| |||||||  |||||||||||  | |||||||||  |||||||||||| |||| || |||||||||| || || |||||||||  || | |||    
T  1290126 ttaattaattacacatgtggcatgccacttaggcgttgactcggtcaaaattgaccaaaaggaccaaagatgcaaaggggttaaatcttagggggctaaa 1290225  T
Q  218 attgtaatttttgtacatagaaggccaaaattgcaactttttaaaagtta--ggggaaaaagtgcacttta 286  Q
    |||||| ||||||||| |||| ||||||||||||||  |||| |||||||  |||| ||||||||||||||    
T  1290226 attgtagtttttgtacttagagggccaaaattgcaagattttgaaagttaaggggggaaaagtgcacttta 1290296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 154 - 300
Target Start/End: Complemental strand, 49306911 - 49306764
Alignment:
Q  154 ttgactttgtcaaaattgactaaaaagatcaaagatgcagagaggctaaatcttaaaggtcaaaattgtaatttttgtacatagaaggccaaaattgcaa 253  Q
    |||||||||||||||||||  |||| || |||||||||| |  | ||||||| ||  || |||||||||| ||||||||| || | ||||||||||||||    
T  49306911 ttgactttgtcaaaattgataaaaaggaccaaagatgcaaaatgactaaatcatattgggcaaaattgtagtttttgtacttaaatggccaaaattgcaa 49306812  T
Q  254 ctttttaaaagttagggg-aaaaagtgcactttaaccttcaaagtact 300  Q
     ||||| |||||| |||| ||||||||||||||| |||  ||||||||    
T  49306811 gtttttgaaagttgggggaaaaaagtgcactttagcctaaaaagtact 49306764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 119 - 287
Target Start/End: Complemental strand, 12129796 - 12129625
Alignment:
Q  119 ttaattatttacacacatggcatgccacacatgcgttgactttgtcaaaattgactaaaaagatcaaagatgcagagaggctaaatcttaaagg-tcaaa 217  Q
    ||||||| |||||||| |||| ||||||  | ||||||| |  |||||||||||  |||| || |||||||||| |  ||||||||||||| || |||||    
T  12129796 ttaattaattacacacgtggcctgccacgtaggcgttgaataagtcaaaattgatcaaaatgaccaaagatgcaaatgggctaaatcttaaggggtcaaa 12129697  T
Q  218 attgtaatttttgtacatagaaggccaaaattgcaactttttaaaagtta--ggggaaaaagtgcactttaa 287  Q
    |||||| ||||||||| ||   |||||||||||||| ||||| |||||||   ||| |||||||||||||||    
T  12129696 attgtagtttttgtacttacggggccaaaattgcaagtttttgaaagttaagaggggaaaagtgcactttaa 12129625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 127 - 286
Target Start/End: Original strand, 1835038 - 1835200
Alignment:
Q  127 ttacacacatggcatgccacacatgcgttgactttgtcaaaattgactaaaaagatcaaagatgcagagaggctaaatctta-aaggtcaaaattgtaat 225  Q
    |||||||| |||||||||| | | ||||||||   |||||||||| |||||| || |||||||||| || ||||||||||||   ||||||||||||| |    
T  1835038 ttacacacgtggcatgccaaataagcgttgaccaagtcaaaattggctaaaaggaccaaagatgcaaaggggctaaatcttagggggtcaaaattgtagt 1835137  T
Q  226 ttttgtacatagaaggccaaaattgcaactttttaaaagttaggg--gaaaaagtgcacttta 286  Q
    |||  ||| |||  || ||||||||||| ||||| ||||||||||  | ||||||||||||||    
T  1835138 tttaatacttagggggtcaaaattgcaagtttttgaaagttagggatggaaaagtgcacttta 1835200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 215 - 286
Target Start/End: Complemental strand, 1963272 - 1963199
Alignment:
Q  215 aaaattgtaatttttgtacatagaaggccaaaattgcaactttttaaaagtta--ggggaaaaagtgcacttta 286  Q
    ||||||||| ||||||||||||| ||||||||||||||||||||| |||||||  |||| ||||||||||||||    
T  1963272 aaaattgtagtttttgtacataggaggccaaaattgcaactttttgaaagttaaggggggaaaagtgcacttta 1963199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 162 - 284
Target Start/End: Complemental strand, 31599919 - 31599794
Alignment:
Q  162 gtcaaaattgactaaaaagatcaaagatgcagagaggctaaatcttaaaggtc-aaaattgtaatttttgtacatagaaggccaaaattgcaacttttta 260  Q
    |||||||||| | |||| |||||||| |||| || ||||||||||||  || | ||||||||| ||||||||| |||  || ||||||||||| ||||||    
T  31599919 gtcaaaattggcaaaaaggatcaaagttgcaaaggggctaaatcttaggggaccaaaattgtagtttttgtacttagggggtcaaaattgcaagttttta 31599820  T
Q  261 aaagtta--ggggaaaaagtgcactt 284  Q
    |||||||  |||||||||||||||||    
T  31599819 aaagttaggggggaaaaagtgcactt 31599794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 162 - 286
Target Start/End: Original strand, 50909643 - 50909771
Alignment:
Q  162 gtcaaaattgactaaaaagatcaaagatgcagagaggctaaatcttaaagg--tcaaaattgtaatttttgtacatagaaggccaaaattgcaacttttt 259  Q
    |||||||||||  |||| || |||||||||| || ||||||||||||| ||  ||||||||||| ||||| |||||||   | |||||| ||||||||||    
T  50909643 gtcaaaattgatcaaaaggaccaaagatgcaaaggggctaaatcttaagggggtcaaaattgtagtttttatacatagggagtcaaaatcgcaacttttt 50909742  T
Q  260 aaaagttagg--ggaaaaagtgcacttta 286  Q
    |||| |||||  |||||||||||||||||    
T  50909743 aaaacttagggtggaaaaagtgcacttta 50909771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 154 - 286
Target Start/End: Original strand, 49307991 - 49308124
Alignment:
Q  154 ttgactttgtcaaaattgactaaaaagatcaaagatgcagagaggctaaatcttaaaggtcaaaattgtaatttttgtacatagaaggccaaaattgcaa 253  Q
    ||||||| ||||||||||||  ||| || |||||||||  || ||| ||||| ||  || |||||||||| ||||||||| |||  ||||||||||||||    
T  49307991 ttgacttggtcaaaattgacccaaaggaccaaagatgcgcaggggcaaaatcatagggggcaaaattgtagtttttgtacttagggggccaaaattgcaa 49308090  T
Q  254 ctttttaaaagtta-ggggaaaaagtgcacttta 286  Q
     ||||| ||||||| |||| ||||||||||||||    
T  49308091 gtttttgaaagttaggggggaaaagtgcacttta 49308124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 127 - 272
Target Start/End: Original strand, 10448197 - 10448342
Alignment:
Q  127 ttacacacatggcatgccacacatgcgttgactttgtcaaaattgactaaaaagatcaaagatgcagagaggctaaatcttaaaggtc-aaaattgtaat 225  Q
    |||||||| |||||||||||  | || ||||||  |||||||||| | |||| || |||||||||| || ||||| |||||| ||| | ||||||||| |    
T  10448197 ttacacacgtggcatgccacgtaggcattgactg-gtcaaaattggccaaaaggaccaaagatgcaaaggggctatatcttagagggccaaaattgtagt 10448295  T
Q  226 ttttgtacatagaaggccaaaattgcaactttttaaaagttagggga 272  Q
    ||||||||||||  ||| ||||| |||||||||| ||| ||||||||    
T  10448296 ttttgtacatagggggctaaaatcgcaactttttgaaacttagggga 10448342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 154 - 286
Target Start/End: Original strand, 19750538 - 19750672
Alignment:
Q  154 ttgactttgtcaaaattgactaaaaagatcaaagatgcagagaggctaaatcttaaaggtc-aaaattgtaatttttgtacatagaaggccaaaattgca 252  Q
    ||||||| ||||||| |||| |||| |||||||  ||||  | ||||||||||||  ||   ||||||||| ||||||||| |||  |||||||||||||    
T  19750538 ttgacttggtcaaaagtgaccaaaaggatcaaatttgcaatggggctaaatcttaggggggtaaaattgtagtttttgtacttagggggccaaaattgca 19750637  T
Q  253 actttttaaaagtta-ggggaaaaagtgcacttta 286  Q
    | ||||||||||||| |||| ||||||||||||||    
T  19750638 agtttttaaaagttaggggggaaaagtgcacttta 19750672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 154 - 286
Target Start/End: Complemental strand, 19789268 - 19789134
Alignment:
Q  154 ttgactttgtcaaaattgactaaaaagatcaaagatgcagagaggctaaatcttaaaggtc-aaaattgtaatttttgtacatagaaggccaaaattgca 252  Q
    ||||||| ||||||| |||| |||| |||||||  ||||  | ||||||||||||  ||   ||||||||| ||||||||| |||  |||||||||||||    
T  19789268 ttgacttggtcaaaagtgaccaaaaggatcaaatttgcaatggggctaaatcttaggggggtaaaattgtagtttttgtacttagggggccaaaattgca 19789169  T
Q  253 actttttaaaagtta-ggggaaaaagtgcacttta 286  Q
    | ||||||||||||| |||| ||||||||||||||    
T  19789168 agtttttaaaagttaggggggaaaagtgcacttta 19789134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 197 - 291
Target Start/End: Original strand, 27257966 - 27258062
Alignment:
Q  197 ggctaaatcttaaagg-tcaaaattgtaatttttgtacatagaaggccaaaattgcaactttttaaaagtt-aggggaaaaagtgcactttaacctt 291  Q
    ||||||||||||| || | ||||||| | |||||||| ||||| || |||||||||||||||||||||||| |||||| |||||||| |||| ||||    
T  27257966 ggctaaatcttaaggggttaaaattggagtttttgtatatagagggtcaaaattgcaactttttaaaagttaaggggagaaagtgcattttatcctt 27258062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 119 - 288
Target Start/End: Complemental strand, 8155910 - 8155739
Alignment:
Q  119 ttaattatttacacacatggcatgccacacatgcgttgactttgtcaaaattgactaaaaagatcaaagatgcagagaggctaaatcttaaaggtc-aaa 217  Q
    ||||||| |||||||| |||| ||| ||  | ||||||| |  |||||| ||||| |||| ||  ||||||||| || ||||||||||||  || | |||    
T  8155910 ttaattaattacacacgtggcctgctacgtaggcgttgaataagtcaaagttgaccaaaatgactaaagatgcaaagcggctaaatcttagggggccaaa 8155811  T
Q  218 attgtaatttttgtacatagaag-gccaaaattgcaactttttaaaagttaggggaaaaagtgcactttaac 288  Q
    |||||| |||||| || |||  | || |||||||||| ||||| ||||||||||| ||||||||||||||||    
T  8155810 attgtagtttttgaacttaggggagctaaaattgcaagtttttgaaagttagggggaaaagtgcactttaac 8155739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 162 - 286
Target Start/End: Complemental strand, 8757804 - 8757678
Alignment:
Q  162 gtcaaaattgactaaaaagatcaaagatgcagagaggctaaatcttaaaggtc-aaaattgtaatttttgtacatagaaggccaaaattgcaacttttta 260  Q
    |||||||||||| |||| ||| |||  ||||  | ||||||||||||| |||| ||||||||| ||| ||||| |||  ||| ||||||| || |||||     
T  8757804 gtcaaaattgaccaaaaggattaaaattgcaatggggctaaatcttaagggtccaaaattgtagtttctgtacttagggggctaaaattgtaagtttttg 8757705  T
Q  261 aaagtta-ggggaaaaagtgcacttta 286  Q
    ||||||| |||||||||||||||||||    
T  8757704 aaagttaaggggaaaaagtgcacttta 8757678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 210 - 276
Target Start/End: Complemental strand, 50909353 - 50909287
Alignment:
Q  210 aggtcaaaattgtaatttttgtacatagaaggccaaaattgcaactttttaaaagttaggggaaaaa 276  Q
    |||| ||||||||| ||||| || |||| ||| ||||||||||||||||||||| ||||||||||||    
T  50909353 aggttaaaattgtagtttttatatataggaggtcaaaattgcaactttttaaaacttaggggaaaaa 50909287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 151 - 267
Target Start/End: Original strand, 46638685 - 46638802
Alignment:
Q  151 gcgttgactttgtcaaaattgactaaaaagatcaaagatgcagagaggctaaatcttaaaggtc-aaaattgtaatttttgtacatagaaggccaaaatt 249  Q
    ||||||||||||||||||||||  |||||||  |||| |||| || | ||||||||||  || | ||||||||||||||||| |||||  |  |||||||    
T  46638685 gcgttgactttgtcaaaattgatcaaaaagactaaagttgcaaagggactaaatcttagggggctaaaattgtaatttttgttcataggggatcaaaatt 46638784  T
Q  250 gcaactttttaaaagtta 267  Q
     ||||||||| |||||||    
T  46638785 ccaactttttgaaagtta 46638802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 151 - 291
Target Start/End: Complemental strand, 10470687 - 10470544
Alignment:
Q  151 gcgttgactttgtcaaaattgactaaaaagatcaaagatgcagagaggctaaatcttaaaggt-caaaattgtaatttttgtacatagaaggccaaaatt 249  Q
    |||||||||| |||||||||||  |||| || ||||| ||||  | ||||||||||||  ||  | ||||||| ||||| |||| |||| || |||||||    
T  10470687 gcgttgacttggtcaaaattgatcaaaaggaccaaagttgcaatggggctaaatcttaggggggctaaattgtgattttggtacttagagggtcaaaatt 10470588  T
Q  250 gcaactttttaaaagtta--ggggaaaaagtgcactttaacctt 291  Q
    |||| ||||| |||||||  |||| |||||||||||||| ||||    
T  10470587 gcaagtttttgaaagttaaggggggaaaagtgcactttagcctt 10470544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 131 - 290
Target Start/End: Complemental strand, 1289258 - 1289096
Alignment:
Q  131 acacatggcatgccacacatgcgttgactttgtcaaaattgactaaaaagatcaaagatgcagagaggctaaatcttaa-aggtcaaaattgtaattttt 229  Q
    |||| |||||||||||  | |||||||||  |||||||||||| |||| || ||||||||||  | || |||||||||| |||  ||||||||| |||||    
T  1289258 acacgtggcatgccacttaagcgttgactcggtcaaaattgaccaaaaggaccaaagatgcaagggggttaaatcttaagaggctaaaattgtagttttt 1289159  T
Q  230 gtacatagaaggccaaaattgcaactttttaaaagtta--ggggaaaaagtgcactttaacct 290  Q
     ||| |||| |  ||||||| ||| | ||| |||||||  |||| |||||| |||||||||||    
T  1289158 atacttagaggatcaaaattacaaatatttgaaagttaaggggggaaaagttcactttaacct 1289096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 214 - 286
Target Start/End: Original strand, 1964465 - 1964539
Alignment:
Q  214 caaaattgtaatttttgtacatagaaggccaaaattgcaactttttaaaagtta--ggggaaaaagtgcacttta 286  Q
    |||||||||| ||||||| |||||  ||||||||||| ||||||||||||||||  || | ||||||||||||||    
T  1964465 caaaattgtagtttttgttcatagggggccaaaattgtaactttttaaaagttaagggtggaaaagtgcacttta 1964539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 198 - 291
Target Start/End: Original strand, 8758844 - 8758940
Alignment:
Q  198 gctaaatcttaaaggtc-aaaattgtaatttttgtacatagaaggccaaaattgcaactttttaaaagtta--ggggaaaaagtgcactttaacctt 291  Q
    |||||||||||| || | ||||||||| ||| ||||| |||  |||||||||||||| ||||| |||||||  |||| ||||||||| |||||||||    
T  8758844 gctaaatcttaaggggccaaaattgtagtttctgtacttagggggccaaaattgcaagtttttgaaagttaaggggggaaaagtgcattttaacctt 8758940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 214 - 286
Target Start/End: Complemental strand, 17383069 - 17382996
Alignment:
Q  214 caaaattgtaatttttgtacatagaaggccaaaattgcaactttttaaaagttagggga-aaaagtgcacttta 286  Q
    |||||||||| ||||||||| ||   | |||||||||||| ||||| |||||||||||| ||||||||||||||    
T  17383069 caaaattgtagtttttgtacttaagggaccaaaattgcaagtttttgaaagttaggggagaaaagtgcacttta 17382996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 162 - 286
Target Start/End: Complemental strand, 35934472 - 35934347
Alignment:
Q  162 gtcaaaattgactaaaaagatcaaagatgcagagaggctaaatcttaaaggtc-aaaattgtaatttttgtacatagaaggccaaaattgcaacttttta 260  Q
    |||||||||||| ||||  || |||| ||||  | ||||||||||||| || | |||||| |||||| | ||| |||  | |||||||| ||| |||||     
T  35934472 gtcaaaattgaccaaaagaattaaagttgcaatggggctaaatcttaaggggccaaaattataatttctttacttaggggaccaaaattacaagtttttg 35934373  T
Q  261 aaagttaggggaaaaagtgcacttta 286  Q
    ||||||||||| ||||||||||||||    
T  35934372 aaagttagggggaaaagtgcacttta 35934347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 162 - 287
Target Start/End: Original strand, 35935504 - 35935632
Alignment:
Q  162 gtcaaaattgactaaaaagatcaaagatgcagagaggctaaatcttaaaggtc-aaaattgtaatttttgtacatagaaggccaaaattgcaacttttta 260  Q
    |||||||||| | |||| ||| |||| ||||  ||||||||||||||  || | ||||||||| ||| ||||| |||  ||| |||||||||| ||||||    
T  35935504 gtcaaaattggccaaaaggattaaagttgcaatgaggctaaatcttagggggccaaaattgtagtttatgtacttagggggctaaaattgcaaattttta 35935603  T
Q  261 aaagtta--ggggaaaaagtgcactttaa 287  Q
    |||||||  ||||  ||||||||||||||    
T  35935604 aaagttaagggggggaaagtgcactttaa 35935632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 215 - 291
Target Start/End: Original strand, 54110653 - 54110728
Alignment:
Q  215 aaaattgtaatttttgtacatagaaggccaaaattgcaactttttaaaagttaggggaaaaagtgcactttaacctt 291  Q
    |||||| |||||||||||||| | ||| ||||||||||| ||||| ||||||| ||  |||||| ||||||||||||    
T  54110653 aaaattataatttttgtacattggaggtcaaaattgcaaattttttaaagtta-ggataaaagtacactttaacctt 54110728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 244 - 290
Target Start/End: Original strand, 55603585 - 55603632
Alignment:
Q  244 aaaattgcaactttttaaaagtta-ggggaaaaagtgcactttaacct 290  Q
    |||||||||| ||||| ||||||| |||||||||||||||||||||||    
T  55603585 aaaattgcaagtttttgaaagttaaggggaaaaagtgcactttaacct 55603632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 162 - 271
Target Start/End: Complemental strand, 21178126 - 21178016
Alignment:
Q  162 gtcaaaattgactaaaaagatcaaagatgcagagaggctaaatcttaaagg-tcaaaattgtaatttttgtacatagaaggccaaaattgcaacttttta 260  Q
    |||||||||| | |||| |||||||| |||| |  |||||||| |||  || ||||||||||| ||||||| |||||  |  ||||||||||||||| |     
T  21178126 gtcaaaattggcaaaaatgatcaaagttgcaaaagggctaaattttagggggtcaaaattgtagtttttgttcataggggatcaaaattgcaactttatg 21178027  T
Q  261 aaagttagggg 271  Q
    |||||||||||    
T  21178026 aaagttagggg 21178016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 286
Target Start/End: Complemental strand, 10447116 - 10447009
Alignment:
Q  183 caaagatgcagagaggctaaatcttaaaggtc-aaaattgtaatttttgtacatagaaggccaaaattgcaactttttaaaagtt---aggggaaaaagt 278  Q
    |||||||||| || ||||||||||||  ||   ||||||||  |||||||||||||  ||| |||||||||||||||| ||| ||   ||||| ||||||    
T  10447116 caaagatgcaaaggggctaaatcttaggggggtaaaattgtggtttttgtacatagggggctaaaattgcaactttttgaaacttaagagggggaaaagt 10447017  T
Q  279 gcacttta 286  Q
    ||||||||    
T  10447016 gcacttta 10447009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 242 - 286
Target Start/End: Original strand, 2193505 - 2193549
Alignment:
Q  242 ccaaaattgcaactttttaaaagttaggggaaaaagtgcacttta 286  Q
    |||||||||||||||||| ||| ||| |||||||| |||||||||    
T  2193505 ccaaaattgcaacttttttaaacttaagggaaaaattgcacttta 2193549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 122 - 186
Target Start/End: Original strand, 2412850 - 2412914
Alignment:
Q  122 attatttacacacatggcatgccacacatgcgttgactttgtcaaaattgactaaaaagatcaaa 186  Q
    ||||||||||| | ||||||||||| || | ||||| |  ||||||||||||||||| |||||||    
T  2412850 attatttacacgcgtggcatgccacgcaggtgttgattaagtcaaaattgactaaaaggatcaaa 2412914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 214 - 291
Target Start/End: Complemental strand, 3927743 - 3927664
Alignment:
Q  214 caaaattgtaatttttgtacatagaaggccaaaattgcaactttttaaaagtt--aggggaaaaagtgcactttaacctt 291  Q
    |||||||||| ||||  ||||| |  ||||||||| ||||| |||||||||||  ||||| |||||||||||||| ||||    
T  3927743 caaaattgtagttttcatacatggggggccaaaatcgcaacattttaaaagttagagggggaaaagtgcactttagcctt 3927664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 211 - 263
Target Start/End: Original strand, 21539092 - 21539144
Alignment:
Q  211 ggtcaaaattgtaatttttgtacatagaaggccaaaattgcaactttttaaaa 263  Q
    ||||||||||||| |||||  || ||| ||||||||||||||| |||||||||    
T  21539092 ggtcaaaattgtagtttttacacttaggaggccaaaattgcaagtttttaaaa 21539144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 72; Significance: 1e-32; HSPs: 40)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 151 - 290
Target Start/End: Complemental strand, 11282149 - 11282007
Alignment:
Q  151 gcgttgactttgtcaaaattgactaaaaagatcaaagatgcagagaggctaaatcttaaagg-tcaaaattgtaatttttgtacatagaaggccaaaatt 249  Q
    ||||||||||||||||||||||  ||||||||||||  |||| || || |||||||||  || |||||||||| ||||||||| ||||  ||||||||||    
T  11282149 gcgttgactttgtcaaaattgatcaaaaagatcaaaattgcaaaggggttaaatcttagggggtcaaaattgtcatttttgtatatagggggccaaaatt 11282050  T
Q  250 gcaactttttaaaagtta--ggggaaaaagtgcactttaacct 290  Q
    ||||||||||||||||||  |||||||||||||||||||||||    
T  11282049 gcaactttttaaaagttaagggggaaaaagtgcactttaacct 11282007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 122 - 267
Target Start/End: Complemental strand, 30335809 - 30335663
Alignment:
Q  122 attatttacacacatggcatgccacacatgcgttgactttgtcaaaattgactaaaaagatcaaagatgcagagaggctaaatctta-aaggtcaaaatt 220  Q
    ||||||||||||  ||||||||||||||||||||||||| |||||||||||  |||| || |||||||||| || ||||||||||||   ||| ||||||    
T  30335809 attatttacacatgtggcatgccacacatgcgttgacttggtcaaaattgaacaaaaggaccaaagatgcaaaggggctaaatcttagggggttaaaatt 30335710  T
Q  221 gtaatttttgtacatagaaggccaaaattgcaactttttaaaagtta 267  Q
    ||||||||||||| |||   ||||||||||||| |||||||||||||    
T  30335709 gtaatttttgtacttagcgagccaaaattgcaagtttttaaaagtta 30335663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 122 - 286
Target Start/End: Original strand, 30336432 - 30336599
Alignment:
Q  122 attatttacacacatggcatgccacacatgcgttgactttgtcaaaattgactaaaaagatcaaagatgcagagaggctaaatctta-aaggtcaaaatt 220  Q
    |||||||||| || ||||||||||||||||| ||||||| |||||||||||| |||| || |||||||||| |  |||||||||||| | ||| ||||||    
T  30336432 attatttacatacgtggcatgccacacatgcattgacttggtcaaaattgaccaaaaggaccaaagatgcaaaatggctaaatcttagagggttaaaatt 30336531  T
Q  221 gtaatttttgtacatagaaggccaaaattgcaactttttaaaagtta--ggggaaaaagtgcacttta 286  Q
    ||| ||||||||| ||| |||| ||||||  || ||||| |||||||  |||||| ||||||||||||    
T  30336532 gtagtttttgtacttaggaggctaaaattataagtttttgaaagttaggggggaagaagtgcacttta 30336599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 127 - 291
Target Start/End: Complemental strand, 24359972 - 24359807
Alignment:
Q  127 ttacacacatggcatgccacacatgcgttgactttgtcaaaattgactaaaaagatcaaagatgcagagaggctaaatctta-aaggtcaaaattgtaat 225  Q
    ||||||||||| ||||||| | | ||||||| || |||||||||||| |||  ||  ||||||||| | |||||||||||||   ||||||||||||| |    
T  24359972 ttacacacatgacatgccaaataagcgttgatttggtcaaaattgaccaaagtgactaaagatgcaaataggctaaatcttagggggtcaaaattgtagt 24359873  T
Q  226 ttttgtacatagaaggccaaaattgcaactttttaaaagttag-gggaaaaagtgcactttaacctt 291  Q
    ||||||| |||| |||| ||||| ||||||||||||||||||| ||||||||| |||||||| ||||    
T  24359872 ttttgtatatag-aggcaaaaatcgcaactttttaaaagttagagggaaaaagagcactttagcctt 24359807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 122 - 267
Target Start/End: Original strand, 43661754 - 43661900
Alignment:
Q  122 attatttacacacatggcatgccacacatgcgttgactttgtcaaaattgactaaaaagatcaaagatgcagagaggctaaatctta-aaggtcaaaatt 220  Q
    ||||||||||||  ||||||||||||||||||||||||| |||||||||||  |||| || ||||||||||    ||| ||||||||   || |||||||    
T  43661754 attatttacacatgtggcatgccacacatgcgttgacttggtcaaaattgatcaaaaggaccaaagatgcaattgggcgaaatcttagggggccaaaatt 43661853  T
Q  221 gtaatttttgtacatagaaggccaaaattgcaactttttaaaagtta 267  Q
     || |||||||||||||| |   |||||||||||||||| |||||||    
T  43661854 ttagtttttgtacatagaggattaaaattgcaactttttgaaagtta 43661900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 183 - 286
Target Start/End: Original strand, 5514263 - 5514367
Alignment:
Q  183 caaagatgcagagaggctaaatcttaaaggtcaaaattgtaatttttgtacatagaaggccaaaattgcaactttttaaaagttagggga-aaaagtgca 281  Q
    |||||||||| |  |||||||| ||| |||||||||||||| ||||||||  |||||||| |||||||||| ||||| ||| |||||||| |||||||||    
T  5514263 caaagatgcaaatgggctaaattttagaggtcaaaattgtagtttttgtatttagaaggctaaaattgcaagttttttaaaattaggggataaaagtgca 5514362  T
Q  282 cttta 286  Q
    |||||    
T  5514363 cttta 5514367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 168 - 291
Target Start/End: Original strand, 32207302 - 32207426
Alignment:
Q  168 attgactaaaaagatcaaagatgcagagaggctaaatcttaa-aggtcaaaattgtaatttttgtacatagaaggccaaaattgcaactttttaaaagtt 266  Q
    |||||| |||| || |||||||||| |||||||||||||||| ||| |||||||||| ||||||||| |||   | ||||||||||| ||||| || |||    
T  32207302 attgaccaaaaggaccaaagatgcaaagaggctaaatcttaagaggccaaaattgtagtttttgtacttagggcgtcaaaattgcaagtttttgaaggtt 32207401  T
Q  267 aggggaaaaagtgcactttaacctt 291  Q
    |||||  ||||||||||||| ||||    
T  32207402 aggggggaaagtgcactttagcctt 32207426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 214 - 291
Target Start/End: Complemental strand, 8388539 - 8388462
Alignment:
Q  214 caaaattgtaatttttgtacatagaaggccaaaattgcaactttttaaaagttaggggaaaaagtgcactttaacctt 291  Q
    ||||||| || |||||||||||||  ||| ||||||||||||||||||||||||||||  ||||||||||||| ||||    
T  8388539 caaaattatagtttttgtacatagggggctaaaattgcaactttttaaaagttaggggggaaagtgcactttagcctt 8388462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 151 - 267
Target Start/End: Original strand, 11283169 - 11283286
Alignment:
Q  151 gcgttgactttgtcaaaattgactaaaaagatcaaagatgcagagaggctaaatcttaaagg-tcaaaattgtaatttttgtacatagaaggccaaaatt 249  Q
    |||||||||||||||||||||||||||| |||||||  |||| || |||||||| |||  ||  ||||||||| |||||| |||||||  ||| ||||||    
T  11283169 gcgttgactttgtcaaaattgactaaaatgatcaaaattgcaaaggggctaaattttaggggaccaaaattgtcatttttatacatagggggctaaaatt 11283268  T
Q  250 gcaactttttaaaagtta 267  Q
     ||||||||| |||||||    
T  11283269 acaactttttgaaagtta 11283286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 127 - 278
Target Start/End: Original strand, 2379860 - 2380010
Alignment:
Q  127 ttacacacatggcatgccacacatgcgttgactttgtcaaaattgactaaaaagatcaaagatgcagagaggctaaatcttaa-aggtcaaaattgtaat 225  Q
    |||||||||||||||| || | | |||||||||| |||||||||||| ||||  | |||||||||| |   ||||||||||||  || ||||||||| |     
T  2379860 ttacacacatggcatgtcaaataagcgttgacttggtcaaaattgaccaaaagaaccaaagatgcaaatgagctaaatcttaaggggccaaaattgt-ag 2379958  T
Q  226 ttttgtacatagaaggccaaaattgcaactttttaaaagttaggggaaaaagt 278  Q
    ||| ||||||||  |||||||||| ||||||||| ||||||||||| ||||||    
T  2379959 tttcgtacatag-gggccaaaattacaactttttgaaagttagggggaaaagt 2380010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 127 - 291
Target Start/End: Original strand, 22221300 - 22221467
Alignment:
Q  127 ttacacacatggcatgccacacatgcgttgactttgtcaaaattgactaaaaagatcaaagatgcagagaggctaaatctta-aaggtcaaaattgtaat 225  Q
    |||||||| |||||| ||| | | ||||||||   |||||||||| |||||| ||||||||||| | || ||||||||||||   ||||||||||||| |    
T  22221300 ttacacacgtggcataccaaataagcgttgaccaagtcaaaattggctaaaaggatcaaagatgtaaaggggctaaatcttagggggtcaaaattgtagt 22221399  T
Q  226 ttttgtacatagaaggccaaaattgcaactttttaaaagttaggg--gaaaaagtgcactttaacctt 291  Q
    |||  ||| |||  || ||||||||||| ||||| ||||||||||  | |||||||||||||| ||||    
T  22221400 tttaatacttagggggtcaaaattgcaagtttttgaaagttaggggtggaaaagtgcactttagcctt 22221467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 127 - 291
Target Start/End: Original strand, 22227642 - 22227809
Alignment:
Q  127 ttacacacatggcatgccacacatgcgttgactttgtcaaaattgactaaaaagatcaaagatgcagagaggctaaatctta-aaggtcaaaattgtaat 225  Q
    |||||||| |||||| ||| | | ||||||||   |||||||||| |||||| ||||||||||| | || ||||||||||||   ||||||||||||| |    
T  22227642 ttacacacgtggcataccaaataagcgttgaccaagtcaaaattggctaaaaggatcaaagatgtaaaggggctaaatcttagggggtcaaaattgtagt 22227741  T
Q  226 ttttgtacatagaaggccaaaattgcaactttttaaaagttaggg--gaaaaagtgcactttaacctt 291  Q
    |||  ||| |||  || ||||||||||| ||||| ||||||||||  | |||||||||||||| ||||    
T  22227742 tttaatacttagggggtcaaaattgcaagtttttgaaagttaggggtggaaaagtgcactttagcctt 22227809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 130 - 286
Target Start/End: Complemental strand, 43661427 - 43661268
Alignment:
Q  130 cacacatggcatgccacacatgcgttgactttgtcaaaattgactaaaaagatcaaagatgcagagaggctaaatctta-aaggtcaaaattgtaatttt 228  Q
    ||||| |||||||||||| |||||||||||| |||||| ||||| ||||  | |||||||||| || ||||||||||||   || ||||||| || ||||    
T  43661427 cacacgtggcatgccacatatgcgttgacttggtcaaagttgaccaaaagaaccaaagatgcaaaggggctaaatcttagggggccaaaattatagtttt 43661328  T
Q  229 tgtacatagaaggccaaaattgcaactttttaaaagttagggg--aaaaagtgcacttta 286  Q
    ||||||||   | ||||||||| |||||||| ||| ||| |||   ||||||||||||||    
T  43661327 tgtacataagggaccaaaattgtaacttttttaaaattaagggtagaaaagtgcacttta 43661268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 119 - 286
Target Start/End: Complemental strand, 10006517 - 10006347
Alignment:
Q  119 ttaattatttacacacatggcatgccacacatgcgttgactttgtcaaaattgactaaaaagatcaaagatgcagagaggctaaatctta-aaggtcaaa 217  Q
    ||||||| |||||||| |||| ||||||  | ||||||| |  |||||||||||| |||| || |||||||||| || ||||||||||||   || ||||    
T  10006517 ttaattaattacacacgtggcctgccacgtaggcgttgaataagtcaaaattgaccaaaaggaccaaagatgcaaaggggctaaatcttagggggccaaa 10006418  T
Q  218 attgtaatttttgtacatagaaggccaaaattgcaactttttaaaagtt--aggggaaaaagtgcacttta 286  Q
    |||||  ||||  ||| |||  |||||||||||||| ||||| ||||||  ||||| ||||||||||||||    
T  10006417 attgttgttttgatacttagggggccaaaattgcaagtttttgaaagttagagggggaaaagtgcacttta 10006347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 119 - 286
Target Start/End: Original strand, 10007691 - 10007861
Alignment:
Q  119 ttaattatttacacacatggcatgccacacatgcgttgactttgtcaaaattgactaaaaagatcaaagatgcagagaggctaaatcttaaagg-tcaaa 217  Q
    ||||||| |||||||| |||| ||||||  | ||||||| |  |||||||||||| |||| || |||||||||| || ||||||||||||  ||  ||||    
T  10007691 ttaattaattacacacgtggcctgccacgtaggcgttgaataagtcaaaattgacgaaaaggaccaaagatgcaaaggggctaaatcttaggggaccaaa 10007790  T
Q  218 attgtaatttttgtacatagaaggccaaaattgcaactttttaaaagtta--ggggaaaaagtgcacttta 286  Q
    |||||  ||| | ||| |||  |||||||||||||| ||||| |||||||  |||| ||||||||||||||    
T  10007791 attgtggtttctatacttagggggccaaaattgcaagtttttgaaagttaaggggggaaaagtgcacttta 10007861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 122 - 290
Target Start/End: Complemental strand, 2379030 - 2378863
Alignment:
Q  122 attatttacacacatggcatgccacacatgcgttgactttgtcaaaattgactaaaaagatcaaagatgcagagaggctaaatcttaa-aggtcaaaatt 220  Q
    |||| |||||||| || ||||||| | | || |||| || |||||||||||  |||| || |||||||||| | |||||| |||||||  ||||||||||    
T  2379030 attaattacacacgtgacatgccaaataagcattgatttggtcaaaattgatcaaaaggaccaaagatgcaaataggctagatcttaaggggtcaaaatt 2378931  T
Q  221 gtaatttttgtacatagaaggccaaaattgcaactttttaaaagttaggggaaaaagtgcactttaacct 290  Q
     |  |||||||| ||||  |  |||||| | ||||||||||||||||  |||||||||||||||||||||    
T  2378930 atggtttttgtatataggggatcaaaatcgtaactttttaaaagtta--ggaaaaagtgcactttaacct 2378863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 162 - 267
Target Start/End: Original strand, 24123869 - 24123975
Alignment:
Q  162 gtcaaaattgactaaaaagatcaaagatgcagagaggctaaatcttaa-aggtcaaaattgtaatttttgtacatagaaggccaaaattgcaacttttta 260  Q
    |||||||||||| |||| || |||||||||| || ||||||||||||  |||  |||||||||||||| |||| ||  ||||||||||||||| |||||     
T  24123869 gtcaaaattgaccaaaaggaccaaagatgcaaaggggctaaatcttaggaggctaaaattgtaattttagtacttaagaggccaaaattgcaagtttttg 24123968  T
Q  261 aaagtta 267  Q
    |||||||    
T  24123969 aaagtta 24123975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 162 - 291
Target Start/End: Original strand, 30570227 - 30570358
Alignment:
Q  162 gtcaaaattgactaaaaagatcaaagatgcagagaggctaaatcttaaaggtc-aaaattgtaatttttgtacatagaaggccaaaattgcaacttttta 260  Q
    |||||||||| | |||| || |||||||||| |  ||||||||||||  || | |||||| ||||||||||||||| | |  ||||||||||||||||||    
T  30570227 gtcaaaattggccaaaaggaccaaagatgcaaaagggctaaatcttagggggccaaaattctaatttttgtacata-aggatcaaaattgcaacttttta 30570325  T
Q  261 aaagtt--aggggaaaaagtgcactttaacctt 291  Q
    ||| ||  ||||||||| |||||||||||||||    
T  30570326 aaacttagaggggaaaaggtgcactttaacctt 30570358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 217 - 288
Target Start/End: Original strand, 29968364 - 29968436
Alignment:
Q  217 aattgtaatttttgtacatagaaggccaaaattgcaactttttaaaagtt-aggggaaaaagtgcactttaac 288  Q
    ||||||| ||||||||| |||  |||||||||||||| |||||||||||| ||||| ||||||||||||||||    
T  29968364 aattgtagtttttgtacttagggggccaaaattgcaagtttttaaaagttaagggggaaaagtgcactttaac 29968436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 216 - 291
Target Start/End: Complemental strand, 1823627 - 1823550
Alignment:
Q  216 aaattgtaatttttgtacatagaaggccaaaattgcaactttttaaaagtta--ggggaaaaagtgcactttaacctt 291  Q
    |||||||| ||||||||| |||| || ||||||||||| |||||||||||||  ||||||||||| ||||||| ||||    
T  1823627 aaattgtagtttttgtacttagagggtcaaaattgcaagtttttaaaagttaagggggaaaaagtacactttagcctt 1823550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 216 - 291
Target Start/End: Complemental strand, 1858072 - 1857995
Alignment:
Q  216 aaattgtaatttttgtacatagaaggccaaaattgcaactttttaaaagtta--ggggaaaaagtgcactttaacctt 291  Q
    |||||||| ||||||||| |||| || ||||||||||| |||||||||||||  ||||||||||| ||||||| ||||    
T  1858072 aaattgtagtttttgtacttagagggtcaaaattgcaagtttttaaaagttaagggggaaaaagtacactttagcctt 1857995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 162 - 286
Target Start/End: Complemental strand, 5514111 - 5513985
Alignment:
Q  162 gtcaaaattgactaaaaagatcaaagatgcagagaggctaaatcttaaaggt-caaaattgtaatttttgtacatagaaggccaaaattgcaacttttta 260  Q
    |||||||||||  |||| || |||||||||| || |||||||| |||  ||  |||||||||| ||||||||| |||  ||||||||||| || |||||     
T  5514111 gtcaaaattgatcaaaaggaccaaagatgcaaaggggctaaattttaggggggcaaaattgtagtttttgtacttagggggccaaaattggaagtttttg 5514012  T
Q  261 aaagtta-ggggaaaaagtgcacttta 286  Q
    ||||||| |||| ||||||||||||||    
T  5514011 aaagttagggggtaaaagtgcacttta 5513985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 162 - 271
Target Start/End: Complemental strand, 24123012 - 24122902
Alignment:
Q  162 gtcaaaattgactaaaaagatcaaagatgcagagaggctaaatcttaaaggtc-aaaattgtaatttttgtacatagaaggccaaaattgcaacttttta 260  Q
    |||||||||||| |||| || |||||||||| ||| |||||||||||  || | |||||| || ||||||||| |||  || ||||||||||| |||||     
T  24123012 gtcaaaattgaccaaaaggaccaaagatgcaaagaagctaaatcttaggggactaaaattatagtttttgtacttagggggtcaaaattgcaaatttttt 24122913  T
Q  261 aaagttagggg 271  Q
    |||||||||||    
T  24122912 aaagttagggg 24122902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 197 - 288
Target Start/End: Original strand, 24361199 - 24361292
Alignment:
Q  197 ggctaaatcttaaagg-tcaaaattgtaatttttgtacatagaaggccaaaattgcaactttttaaaagttagggga-aaaagtgcactttaac 288  Q
    |||||||||||||||| | |||||||||||||||||||||||| | ||||||| | || ||||||||| | | || | ||||||||||||||||    
T  24361199 ggctaaatcttaaaggattaaaattgtaatttttgtacatagaggaccaaaatcgaaattttttaaaaataaaggaagaaaagtgcactttaac 24361292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 162 - 271
Target Start/End: Original strand, 45114488 - 45114597
Alignment:
Q  162 gtcaaaattgactaaaaagatcaaagatgcagagaggctaaatcttaaaggtcaaaattgtaatttttgtacatagaaggccaaaattgcaactttttaa 261  Q
    ||||||||| || |||| ||| |||| ||||  |||| ||||||||| ||| |||||||||| ||| |||||||||    |||||||||||| ||||| |    
T  45114488 gtcaaaattaaccaaaatgattaaagttgcaatgaggttaaatcttagaggccaaaattgtagtttgtgtacatagtgaaccaaaattgcaagtttttga 45114587  T
Q  262 aagttagggg 271  Q
    ||||||||||    
T  45114588 aagttagggg 45114597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 162 - 286
Target Start/End: Complemental strand, 29043528 - 29043401
Alignment:
Q  162 gtcaaaattgactaaaaagatcaaagatgcagagaggctaaatctta-aaggtcaaaattgtaatttttgtacatagaaggccaaaattgcaacttttta 260  Q
    |||||||||| |||||| |||||||||| || || |||||||||||| | ||  ||||||||| |||||||||||||  || |||||| || |||||||     
T  29043528 gtcaaaattgtctaaaaggatcaaagatacaaaggggctaaatcttagagggaaaaaattgtagtttttgtacatagggggtcaaaatcgcgactttttg 29043429  T
Q  261 aaagttagggga--aaaagtgcacttta 286  Q
    || |||| ||||  ||||||| ||||||    
T  29043428 aaggttaagggaggaaaagtgaacttta 29043401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 162 - 268
Target Start/End: Original strand, 1824049 - 1824156
Alignment:
Q  162 gtcaaaattgactaaaaagatcaaagatgcagagaggctaaatcttaaaggtc-aaaattgtaatttttgtacatagaaggccaaaattgcaacttttta 260  Q
    |||||||||||| |||| || |||||||||| |  ||||||||||||  || | ||||||||| ||||||||| |||  | |||||||||||| |||||     
T  1824049 gtcaaaattgaccaaaaggaccaaagatgcaaaatggctaaatcttagggggccaaaattgtagtttttgtacttaggggaccaaaattgcaagtttttg 1824148  T
Q  261 aaagttag 268  Q
    ||||||||    
T  1824149 aaagttag 1824156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 162 - 268
Target Start/End: Original strand, 1858494 - 1858601
Alignment:
Q  162 gtcaaaattgactaaaaagatcaaagatgcagagaggctaaatcttaaaggtc-aaaattgtaatttttgtacatagaaggccaaaattgcaacttttta 260  Q
    |||||||||||| |||| || |||||||||| |  ||||||||||||  || | ||||||||| ||||||||| |||  | |||||||||||| |||||     
T  1858494 gtcaaaattgaccaaaaggaccaaagatgcaaaatggctaaatcttagggggccaaaattgtagtttttgtacttaggggaccaaaattgcaagtttttg 1858593  T
Q  261 aaagttag 268  Q
    ||||||||    
T  1858594 aaagttag 1858601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 214 - 286
Target Start/End: Complemental strand, 11287853 - 11287779
Alignment:
Q  214 caaaattgtaatttttgtacatagaaggccaaaattgcaactttttaaaagttaggg--gaaaaagtgcacttta 286  Q
    |||||||||| ||| ||||| |||  |||||||||||||| ||||| ||||||||||  ||||||||||||||||    
T  11287853 caaaattgtagtttctgtacttagtgggccaaaattgcaagttttttaaagttaggggtgaaaaagtgcacttta 11287779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 127 - 286
Target Start/End: Complemental strand, 22220553 - 22220391
Alignment:
Q  127 ttacacacatggcatgccacacatgcgttgactttgtcaaaattgactaaaaagatcaaagatgcagagaggctaaatcttaaaggtc-aaaattgtaat 225  Q
    |||||||| |||||||||| |   || |||||||  ||||||||||  |||| || |||||||||| |  ||||||||||||  || | ||||||||| |    
T  22220553 ttacacacgtggcatgccaaatcagcattgacttgctcaaaattgatcaaaaggaccaaagatgcaaatgggctaaatcttagggggccaaaattgtagt 22220454  T
Q  226 ttttgtacatagaaggccaaaattgcaactttttaaaagtt--aggggaaaaagtgcacttta 286  Q
    |||| |||||||  || ||||||||||| | ||| ||||||  ||||| ||||||||||||||    
T  22220453 ttttatacatagggggtcaaaattgcaagtattttaaagttagagggggaaaagtgcacttta 22220391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 144 - 291
Target Start/End: Original strand, 40471100 - 40471249
Alignment:
Q  144 cacacatgcgttgactttgtcaaaattgactaaaaagatcaaagatgcagagaggctaaatcttaaaggtc-aaaattgtaatttttgtacatagaaggc 242  Q
    ||||| ||| ||||||  |||||||||||| |||| || ||||||| || ||||| |||||||||| || | ||||||||| ||||||||  ||   | |    
T  40471100 cacacgtgcattgactcggtcaaaattgaccaaaatgaccaaagatacaaagaggttaaatcttaaggggctaaaattgtagtttttgtattta-tggac 40471198  T
Q  243 caaaattgcaactttttaaaagtt--aggggaaaaagtgcactttaacctt 291  Q
    |||||||| || ||||| ||||||  ||||| |||||||||||||||||||    
T  40471199 caaaattgtaagttttttaaagttaaagggggaaaagtgcactttaacctt 40471249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 162 - 271
Target Start/End: Complemental strand, 18978149 - 18978039
Alignment:
Q  162 gtcaaaattgactaaaaagatcaaagatgcagagaggctaaatcttaaaggtc-aaaattgtaatttttgtacatagaaggccaaaattgcaacttttta 260  Q
    ||||||||||   |||| |||||||| |||| || ||||||||||||| || | ||||||||| ||||||||| |||  ||||||||||| ||  ||||     
T  18978149 gtcaaaattggaaaaaaggatcaaagttgcaaaggggctaaatcttaaggggccaaaattgtagtttttgtacttagggggccaaaattgaaagattttg 18978050  T
Q  261 aaagttagggg 271  Q
    |||||||||||    
T  18978049 aaagttagggg 18978039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 123 - 275
Target Start/End: Complemental strand, 40469509 - 40469356
Alignment:
Q  123 ttatttacacacatggcatgccacacatgcgttgactttgtcaaaattgactaaaaagatcaaagatgcagagaggctaaatctta-aaggtcaaaattg 221  Q
    |||||||||||  || ||||||||||||| ||| |||| |||||||||||  ||||  | ||||||| || || | ||||||||||   ||| |||||||    
T  40469509 ttatttacacatgtgacatgccacacatgtgtttacttggtcaaaattgatcaaaagaaccaaagatacaaagggactaaatcttatgtggttaaaattg 40469410  T
Q  222 taatttttgtacatagaaggccaaaattgcaactttttaaaagttaggggaaaa 275  Q
    |||||||||||  |||| |   |||||| ||| ||||| ||||||| |||||||    
T  40469409 taatttttgtatttagaggatgaaaattacaaatttttgaaagttaagggaaaa 40469356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 215 - 290
Target Start/End: Original strand, 8389714 - 8389791
Alignment:
Q  215 aaaattgtaatttttgtacatagaaggccaaaattgcaactttttaaaagtta--ggggaaaaagtgcactttaacct 290  Q
    ||||||||| ||||||||||||   | |||||||||||||||||| ||| |||   ||| ||||||||||||||||||    
T  8389714 aaaattgtagtttttgtacataagggaccaaaattgcaactttttgaaacttaagaggggaaaagtgcactttaacct 8389791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 226 - 291
Target Start/End: Original strand, 12353396 - 12353462
Alignment:
Q  226 ttttgtacatagaaggccaaaattgcaactttttaaaagtt-aggggaaaaagtgcactttaacctt 291  Q
    |||||||| |||  |||||||||||||| ||||| |||||| ||||| |||||||||||||| ||||    
T  12353396 ttttgtacttagggggccaaaattgcaagtttttgaaagttaagggggaaaagtgcactttagcctt 12353462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #36
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 162 - 271
Target Start/End: Complemental strand, 18971040 - 18970930
Alignment:
Q  162 gtcaaaattgactaaaaagatcaaagatgcagagaggctaaatcttaaagg-tcaaaattgtaatttttgtacatagaaggccaaaattgcaacttttta 260  Q
    |||||||||| | |||| || ||||| |||| || || |||||||| | || ||||||||||| ||||||||| |||  ||||||||||| ||  ||||     
T  18971040 gtcaaaattggcaaaaaggaccaaagttgcaaaggggttaaatcttcaggggtcaaaattgtagtttttgtacttagggggccaaaattgaaagattttg 18970941  T
Q  261 aaagttagggg 271  Q
    |||||||||||    
T  18970940 aaagttagggg 18970930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #37
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 219 - 286
Target Start/End: Complemental strand, 36249624 - 36249555
Alignment:
Q  219 ttgtaatttttgtacatagaaggccaaaattgcaactttttaaaagtta--ggggaaaaagtgcacttta 286  Q
    |||| |||||| | ||||| ||||||||||||||||||||| ||| |||  |||| ||||||||||||||    
T  36249624 ttgtcatttttattcataggaggccaaaattgcaactttttgaaacttaaggggggaaaagtgcacttta 36249555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #38
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 214 - 271
Target Start/End: Original strand, 3208206 - 3208263
Alignment:
Q  214 caaaattgtaatttttgtacatagaaggccaaaattgcaactttttaaaagttagggg 271  Q
    ||||||||| |||||| || |||| |||| ||||| |||||||||||||| |||||||    
T  3208206 caaaattgttatttttttaaataggaggctaaaatcgcaactttttaaaacttagggg 3208263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #39
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 195 - 267
Target Start/End: Complemental strand, 12352018 - 12351945
Alignment:
Q  195 gaggctaaatcttaaagg-tcaaaattgtaatttttgtacatagaaggccaaaattgcaactttttaaaagtta 267  Q
    ||||||||||||||  || ||||||||||| ||||||||| |||  || ||||||||||| ||||| |||||||    
T  12352018 gaggctaaatcttagggggtcaaaattgtagtttttgtacttagggggtcaaaattgcaaatttttgaaagtta 12351945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #40
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 161 - 286
Target Start/End: Original strand, 18979090 - 18979218
Alignment:
Q  161 tgtcaaaattgactaaaaagatcaaagatgcagagaggctaaatcttaaaggtc-aaaattgtaatttttgtacatagaaggccaaaattgcaacttttt 259  Q
    ||||||||||| | |||| |||||||| |||| |  ||||||||| ||| || | ||||||||| ||||| ||  |||  |||||||||||||| || ||    
T  18979090 tgtcaaaattggcaaaaaggatcaaagttgcaaatgggctaaatcataaggggccaaaattgtagtttttatatttagggggccaaaattgcaagttgtt 18979189  T
Q  260 aaaagtta--ggggaaaaagtgcacttta 286  Q
     |||||||  |||| ||||||||||||||    
T  18979190 gaaagttagggggggaaaagtgcacttta 18979218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 67; Significance: 1e-29; HSPs: 30)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 131 - 286
Target Start/End: Original strand, 22940563 - 22940720
Alignment:
Q  131 acacatggcatgccacacatgcgttgactttgtcaaaattgactaaaaagatcaaagatgcagagaggctaaatcttaaaggtcaaaattgtaatttttg 230  Q
    |||| |||||||||||  | |||||||||| |||||||||||| |||| ||| ||||||| | || |||||||| |||  ||||||||||||||||||||    
T  22940563 acacgtggcatgccacttaggcgttgacttggtcaaaattgaccaaaaggataaaagatgaaaaggggctaaattttaggggtcaaaattgtaatttttg 22940662  T
Q  231 tacatagaaggccaaaattgcaactttttaaaagtta--ggggaaaaagtgcacttta 286  Q
    ||| |||  |||||||||||||| ||||| |||||||  |||| ||||||||||||||    
T  22940663 tacttagggggccaaaattgcaagtttttgaaagttaaggggggaaaagtgcacttta 22940720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 127 - 287
Target Start/End: Complemental strand, 42195297 - 42195136
Alignment:
Q  127 ttacacacatggcatgccacacatgcgttgactttgtcaaaattgactaaaaagatcaaagatgcagagaggctaaatcttaaaggtc-aaaattgtaat 225  Q
    |||||||| |||||||||| |   |||||||||| |||||||||||| |||| || |||||||||| || ||||||||||||  || | |||||||||      
T  42195297 ttacacacgtggcatgccaaatcagcgttgacttggtcaaaattgaccaaaaggaccaaagatgcaaaggggctaaatcttaggggaccaaaattgtaga 42195198  T
Q  226 ttttgtacatagaaggccaaaattgcaactttttaaaagttaggggaaaaagtgcactttaa 287  Q
    ||||||||||||  ||||||||| |||||||||||||  | ||||| |||||||||||||||    
T  42195197 ttttgtacatagggggccaaaatcgcaactttttaaagttaagggggaaaagtgcactttaa 42195136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 122 - 233
Target Start/End: Complemental strand, 16650162 - 16650050
Alignment:
Q  122 attatttacacacatggcatgccacacatgcgttgactttgtcaaaattgactaaaaagatcaaagatgcagagaggctaaatctta-aaggtcaaaatt 220  Q
    ||||||||||||| ||||||||||||||||| ||||||| |||||||||||| |||| || |||||||||| || || ||||||||| | ||||||||||    
T  16650162 attatttacacacgtggcatgccacacatgcattgacttggtcaaaattgaccaaaaggaccaaagatgcaaaggggttaaatcttagagggtcaaaatt 16650063  T
Q  221 gtaatttttgtac 233  Q
    ||| |||||||||    
T  16650062 gtagtttttgtac 16650050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 127 - 291
Target Start/End: Complemental strand, 24333077 - 24332911
Alignment:
Q  127 ttacacacatggcatgccacacatgcgttgactttgtcaaaattgactaaaaagatcaaagatgcagagaggctaaatcttaaagg-tcaaaattgtaat 225  Q
    |||||||| |||||||||||  | || ||||||  |||||||||||| |||| || |||||||||| || || ||||||||| ||| ||||||||||| |    
T  24333077 ttacacacgtggcatgccacgtaggcattgactg-gtcaaaattgaccaaaaggaccaaagatgcaaaggggttaaatcttagagggtcaaaattgtagt 24332979  T
Q  226 ttttgtacatagaaggccaaaattgcaactttttaaaagtta--ggggaaaaagtgcactttaacctt 291  Q
    |||||||||||   |||||||||||||| ||||| ||| |||  ||||||||||||||||||||||||    
T  24332978 ttttgtacataaggggccaaaattgcaagtttttgaaacttaagggggaaaaagtgcactttaacctt 24332911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 122 - 286
Target Start/End: Original strand, 16650786 - 16650953
Alignment:
Q  122 attatttacacacatggcatgccacacatgcgttgactttgtcaaaattgactaaaaagatcaaagatgcagagaggctaaatcttaaaggtc-aaaatt 220  Q
    |||| |||||||| |||||||||||||||||||||||||  ||||||||||| |||| || |||||||||| |  ||||||| ||||  || | ||||||    
T  16650786 attaattacacacgtggcatgccacacatgcgttgacttgatcaaaattgaccaaaaggaccaaagatgcaaatgggctaaaccttagggggctaaaatt 16650885  T
Q  221 gtaatttttgtacatagaaggccaaaattgcaactttttaaaagtta--ggggaaaaagtgcacttta 286  Q
    ||| ||||| ||| |||  || ||||||||||| |||||||||||||  || | ||||||||||||||    
T  16650886 gtagtttttatacttagggggtcaaaattgcaagtttttaaaagttaagggtggaaaagtgcacttta 16650953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 119 - 286
Target Start/End: Complemental strand, 25523242 - 25523072
Alignment:
Q  119 ttaattatttacacacatggcatgccacacatgcgttgactttgtcaaaattgactaaaaagatcaaagatgcagagaggctaaatcttaaagg-tcaaa 217  Q
    ||||||| |||||||| ||||| |||||  | ||||||| |   ||||||||||  |||| ||||||||||||| || ||||||||||||  || |||||    
T  25523242 ttaattaattacacacgtggcaggccacgtaggcgttgaataaatcaaaattgatcaaaaggatcaaagatgcaaaggggctaaatcttagggggtcaaa 25523143  T
Q  218 attgtaatttttgtacatagaaggccaaaattgcaactttttaaaagtta--ggggaaaaagtgcacttta 286  Q
    |||||| ||||||||| |||  ||| |||||||||| ||||| |||||||  |||| ||||||||||||||    
T  25523142 attgtagtttttgtacttagggggctaaaattgcaagtttttgaaagttaaggggggaaaagtgcacttta 25523072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 162 - 286
Target Start/End: Complemental strand, 2186900 - 2186774
Alignment:
Q  162 gtcaaaattgactaaaaagatcaaagatgcagagaggctaaatcttaaagg-tcaaaattgtaatttttgtacatagaaggccaaaattgcaacttttta 260  Q
    |||||||||||| |||| || |||||||| | |  ||||||||||||  || | ||||||||| |||||||||||||||| ||||||||||||||||||     
T  2186900 gtcaaaattgaccaaaaggaccaaagatgtaaaatggctaaatcttaggggattaaaattgtagtttttgtacatagaagaccaaaattgcaactttttg 2186801  T
Q  261 aaagtta-ggggaaaaagtgcacttta 286  Q
    ||| ||| ||||||||| |||||||||    
T  2186800 aaacttagggggaaaaaatgcacttta 2186774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 119 - 291
Target Start/End: Complemental strand, 19753084 - 19752910
Alignment:
Q  119 ttaattatttacacacatggcatgccacacatgcgttgactttgtcaaaattgactaaaaagatcaaagatgcagagaggctaaatcttaaaggtc-aaa 217  Q
    ||||||| |||||||| |||| ||||||  | ||||||| |  |||||||||||| |||| || ||||||||||  | ||||||||| ||  || | |||    
T  19753084 ttaattaattacacacgtggcctgccacgtaggcgttgaataagtcaaaattgaccaaaaggaccaaagatgcaatggggctaaatcatagggggccaaa 19752985  T
Q  218 attgtaatttttgtacatagaaggccaaaattgcaactttttaaaagtta-ggggaaaaagtgcactttaacctt 291  Q
    |||||| ||||||||| |||  |||||||||||||| ||||| ||||||| |||| |||||||||||||| ||||    
T  19752984 attgtagtttttgtacttagggggccaaaattgcaagtttttgaaagttaggggggaaaagtgcactttagcctt 19752910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 151 - 271
Target Start/End: Original strand, 42196160 - 42196281
Alignment:
Q  151 gcgttgactttgtcaaaattgactaaaaagatcaaagatgcagagaggctaaatcttaaaggtc-aaaattgtaatttttgtacatagaaggccaaaatt 249  Q
    |||||||||| |||||||||||| |||| || |||||||||| |  ||||||||||||  || | |||| |||| |||||||||||||| ||||||| |     
T  42196160 gcgttgacttggtcaaaattgaccaaaaggaccaaagatgcaaatgggctaaatcttaggggactaaaaatgtagtttttgtacatagagggccaaattc 42196259  T
Q  250 gcaactttttaaaagttagggg 271  Q
     |||||||||||||||||||||    
T  42196260 acaactttttaaaagttagggg 42196281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 162 - 291
Target Start/End: Original strand, 28539791 - 28539922
Alignment:
Q  162 gtcaaaattgactaaaaagatcaaagatgcagagaggctaaatcttaaaggtc-aaaattgtaatttttgtacatagaaggccaaaattgcaacttttta 260  Q
    |||||||||| | |||| |||||||| |||| || | ||||||||||  || | ||||||||| ||||||||| |||| || ||||||||||| ||||||    
T  28539791 gtcaaaattggcaaaaaggatcaaagttgcaaagggactaaatcttaggggaccaaaattgtagtttttgtacttagagggtcaaaattgcaagttttta 28539890  T
Q  261 aaagtta-ggggaaaaagtgcactttaacctt 291  Q
    ||||||| |||| |||| ||||||||||||||    
T  28539891 aaagttaggggggaaaaatgcactttaacctt 28539922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 162 - 284
Target Start/End: Original strand, 36486459 - 36486584
Alignment:
Q  162 gtcaaaattgactaaaaagatcaaagatgcagagaggctaaatcttaaaggtc-aaaattgtaatttttgtacatagaaggccaaaattgcaacttttta 260  Q
    |||||||||||| |||| |||||||| |||| || | ||||||||||  || | ||||||||| ||||||||| |||  || ||||||||||| ||||||    
T  36486459 gtcaaaattgacaaaaaggatcaaagttgcaaagggactaaatcttaggggaccaaaattgtagtttttgtacttagggggtcaaaattgcaagttttta 36486558  T
Q  261 aaagtta--ggggaaaaagtgcactt 284  Q
    |||||||  |||||||||||||||||    
T  36486559 aaagttaggggggaaaaagtgcactt 36486584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 212 - 290
Target Start/End: Original strand, 1016885 - 1016965
Alignment:
Q  212 gtcaaaattgtaatttttgtacatagaaggccaaaattgcaactttttaaaagttagggg--aaaaagtgcactttaacct 290  Q
    |||||||||||| |||||||||||||||| |||||||| ||| ||||||||| |||||||  ||||| | |||||||||||    
T  1016885 gtcaaaattgtagtttttgtacatagaagaccaaaattacaattttttaaaaattagggggaaaaaaatacactttaacct 1016965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 119 - 286
Target Start/End: Original strand, 18486830 - 18487000
Alignment:
Q  119 ttaattatttacacacatggcatgccacacatgcgttgactttgtcaaaattgactaaaaagatcaaagatgcagagaggctaaatctta-aaggtcaaa 217  Q
    ||||||| |||||||| |||| ||||||  | ||||||| |  |||||||||||| |||| || |||||||||| || ||||||||||||   || ||||    
T  18486830 ttaattaattacacacgtggcctgccacgtaggcgttgaataagtcaaaattgaccaaaaggaccaaagatgcaaaggggctaaatcttagggggccaaa 18486929  T
Q  218 attgtaatttttgtacatagaaggccaaaattgcaactttttaaaagtta--ggggaaaaagtgcacttta 286  Q
    |||||  ||| | ||| |||  |||||||||||||| ||||| |||||||  ||||  |||||||||||||    
T  18486930 attgtggtttctatacttagggggccaaaattgcaagtttttgaaagttaagggggggaaagtgcacttta 18487000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 214 - 286
Target Start/End: Complemental strand, 20214272 - 20214199
Alignment:
Q  214 caaaattgtaatttttgtacatagaaggccaaaattgcaactttttaaaagtt-aggggaaaaagtgcacttta 286  Q
    |||||||||| ||||||||||||||  || |||||||||| ||||| |||||| ||||| ||||||||||||||    
T  20214272 caaaattgtagtttttgtacatagagtgctaaaattgcaagtttttgaaagttaagggggaaaagtgcacttta 20214199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 119 - 250
Target Start/End: Original strand, 25524026 - 25524158
Alignment:
Q  119 ttaattatttacacacatggcatgccacacatgcgttgactttgtcaaaattgactaaaaagatcaaagatgcagagaggctaaatctta-aaggtcaaa 217  Q
    ||||||| |||||||| |||  ||||||  | ||||||| |  |||||||||||| |||| ||  ||||||||| || ||||||||||||   |||||||    
T  25524026 ttaattaattacacacgtggtctgccacgtaggcgttgaataagtcaaaattgaccaaaaggactaaagatgcaaaggggctaaatcttagggggtcaaa 25524125  T
Q  218 attgtaatttttgtacatagaaggccaaaattg 250  Q
    ||| || ||||||||| ||| ||||||||||||    
T  25524126 attatagtttttgtacttaggaggccaaaattg 25524158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 162 - 286
Target Start/End: Complemental strand, 28538806 - 28538679
Alignment:
Q  162 gtcaaaattgactaaaaagatcaaagatgcagagaggctaaatcttaaaggtc-aaaattgtaatttttgtacatagaaggccaaaattgcaacttttta 260  Q
    |||||||||||| |||| |||||||| |||| || ||||||||||||  || | ||||||||| ||||||||| ||   || ||||||||||| |||||     
T  28538806 gtcaaaattgacaaaaaggatcaaagttgcaaaggggctaaatcttagggggctaaaattgtagtttttgtacttaaggggtcaaaattgcaagtttttg 28538707  T
Q  261 aaagtta--ggggaaaaagtgcacttta 286  Q
    |||||||  || | ||||||||||||||    
T  28538706 aaagttacgggtggaaaagtgcacttta 28538679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 170 - 291
Target Start/End: Complemental strand, 21835162 - 21835039
Alignment:
Q  170 tgactaaaaagatcaaagatgcagagaggctaaatcttaaagg-tcaaaattgtaatttttgtacatagaaggccaaaattgcaactttttaaaagttag 268  Q
    ||||||||| |||||||| |||| || || |||||||||  || ||||||||||| |||||||||||||  || ||||||  ||||||||| ||| ||||    
T  21835162 tgactaaaaggatcaaagttgcaaaggggttaaatcttagggggtcaaaattgtagtttttgtacatagggggtcaaaatcacaactttttcaaacttag 21835063  T
Q  269 -gggaaaaagtgcactttaacctt 291  Q
     |||  ||||||||||||| ||||    
T  21835062 agggggaaagtgcactttagcctt 21835039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 119 - 291
Target Start/End: Complemental strand, 18485318 - 18485136
Alignment:
Q  119 ttaattatttacacacatggcatgccacacatgcgttgactttgtcaaaattgactaaaaagatcaaagatgcagagaggctaaatctt--------aaa 210  Q
    ||||||| |||||||| |||| ||||||  | ||||||| |  ||||||||| || |||| ||||||||||||| || |||||||||||        |||    
T  18485318 ttaattaattacacacgtggcctgccacgtaggcgttgaataagtcaaaattaaccaaaaggatcaaagatgcaaaggggctaaatcttagggggccaaa 18485219  T
Q  211 ggtcaaaattgtaatttttgtacatagaaggccaaaattgcaactttttaaaagtt--aggggaaaaagtgcactttaacctt 291  Q
       |||||||||  ||||  ||| |||  |||||||||||||| ||||| ||||||  |||||||||||||||||||| ||||    
T  18485218 acccaaaattgttgttttgatacttagggggccaaaattgcaagttttttaaagttagaggggaaaaagtgcactttagcctt 18485136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 215 - 272
Target Start/End: Complemental strand, 1015560 - 1015503
Alignment:
Q  215 aaaattgtaatttttgtacatagaaggccaaaattgcaactttttaaaagttagggga 272  Q
    |||||||||  ||||||||| ||  ||||||||||| |||||||||||||||||||||    
T  1015560 aaaattgtaggttttgtacacagggggccaaaattgtaactttttaaaagttagggga 1015503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 215 - 289
Target Start/End: Complemental strand, 38834162 - 38834087
Alignment:
Q  215 aaaattgtaatttttgtacatagaaggccaaaattgcaactttttaaaagtta--ggggaaaaagtgcactttaacc 289  Q
    ||||||||| |||||||||||| | || |||||| ||||||||||||||||||  ||| ||||| ||||||||||||    
T  38834162 aaaattgtagtttttgtacata-agggtcaaaatcgcaactttttaaaagttaaggggaaaaaaatgcactttaacc 38834087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 215 - 286
Target Start/End: Original strand, 21834944 - 21835016
Alignment:
Q  215 aaaattgtaatttttgtacatagaaggccaaaattgcaactttttaaaagtta-ggggaaaaagtgcacttta 286  Q
    ||||||||| ||||||| ||||||||| |||| |||||||||||| ||| |||  ||| ||||||||||||||    
T  21834944 aaaattgtagtttttgttcatagaaggtcaaatttgcaactttttcaaacttataggggaaaagtgcacttta 21835016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 127 - 269
Target Start/End: Original strand, 25056316 - 25056460
Alignment:
Q  127 ttacacacatggcatgccacacatgcgttgactttgtcaaaattgactaaaaagatcaaagatgcaga-gaggctaaatcttaaagg-tcaaaattgtaa 224  Q
    |||||||| |||||||||| | | ||||||||   |||||||||| ||||||  | |||||||| | | ||||||||||||||  || |||||||||||     
T  25056316 ttacacacgtggcatgccaaataagcgttgaccaagtcaaaattggctaaaacaaccaaagatgtaaatgaggctaaatcttagggggtcaaaattgtag 25056415  T
Q  225 tttttgtacatagaaggccaaaattgcaactttttaaaagttagg 269  Q
    ||||  ||| |||  || ||||||||||| ||||| |||||||||    
T  25056416 ttttaatacttagggggtcaaaattgcaagtttttgaaagttagg 25056460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 119 - 290
Target Start/End: Original strand, 2686329 - 2686505
Alignment:
Q  119 ttaattatttacacacatggcatgccacacatgcgttgactttgtcaaaattgactaaaaagatcaaagatgcagagaggctaaatcttaaaggtc-aaa 217  Q
    ||||||| ||||||||||||| ||  ||  | ||||||| |  |||||||||||  |||| || ||||||||||  ||||||||||| ||  || | |||    
T  2686329 ttaattaattacacacatggcctgatacgtaggcgttgaataagtcaaaattgatcaaaaggaccaaagatgcaatgaggctaaatcataggggaccaaa 2686428  T
Q  218 attgtaatttttgtacatagaaggccaaaattgcaactttttaaaagttag----gggaaaaagtgcactttaacct 290  Q
    ||| || ||||||||| ||  ||  ||||||||||| ||||||||||||||    |||  |||||||||||||||||    
T  2686429 attatagtttttgtacttaagagatcaaaattgcaagtttttaaaagttagaggagggggaaagtgcactttaacct 2686505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 211 - 291
Target Start/End: Complemental strand, 33158178 - 33158096
Alignment:
Q  211 ggtcaaaattgtaatttttgtacatagaaggccaaaattgcaactttttaaaagttagggg--aaaaagtgcactttaacctt 291  Q
    ||||||||||||| ||||||||| |||   | ||||||||||| ||||| |||||||||||  ||||| ||||||||| ||||    
T  33158178 ggtcaaaattgtagtttttgtacttagggtgtcaaaattgcaagtttttgaaagttagggggaaaaaaatgcactttagcctt 33158096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 213 - 271
Target Start/End: Complemental strand, 1796132 - 1796074
Alignment:
Q  213 tcaaaattgtaatttttgtacatagaaggccaaaattgcaactttttaaaagttagggg 271  Q
    ||||||||||| ||||||||| |||  ||||||| |||||| ||||| |||||||||||    
T  1796132 tcaaaattgtagtttttgtacttaggtggccaaagttgcaagtttttgaaagttagggg 1796074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 162 - 271
Target Start/End: Complemental strand, 36485430 - 36485320
Alignment:
Q  162 gtcaaaattgactaaaaagatcaaagatgcagagaggctaaatctta-aaggtcaaaattgtaatttttgtacatagaaggccaaaattgcaacttttta 260  Q
    |||||||||||| |||| |||||||| |||| || || |||||||||   || ||||||| || ||||||||| ||  ||| |||||||| || |||||     
T  36485430 gtcaaaattgacaaaaatgatcaaagttgcaaaggggttaaatcttagggggccaaaattatagtttttgtacttaagaggtcaaaattgtaagtttttt 36485331  T
Q  261 aaagttagggg 271  Q
    |||||||||||    
T  36485330 aaagttagggg 36485320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 214 - 271
Target Start/End: Original strand, 19754154 - 19754211
Alignment:
Q  214 caaaattgtaatttttgtacatagaaggccaaaattgcaactttttaaaagttagggg 271  Q
    |||||||||| ||||||||  |||  |||||||||||||| ||||| |||||||||||    
T  19754154 caaaattgtagtttttgtatttagggggccaaaattgcaagtttttgaaagttagggg 19754211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 217 - 270
Target Start/End: Complemental strand, 34893739 - 34893686
Alignment:
Q  217 aattgtaatttttgtacatagaaggccaaaattgcaactttttaaaagttaggg 270  Q
    ||||||| |||||||||||||   ||||||||||||| ||||| ||||||||||    
T  34893739 aattgtagtttttgtacatagggagccaaaattgcaagtttttgaaagttaggg 34893686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 215 - 271
Target Start/End: Complemental strand, 7311666 - 7311610
Alignment:
Q  215 aaaattgtaatttttgtacatagaaggccaaaattgcaactttttaaaagttagggg 271  Q
    ||||||||| ||||||||| | | ||||||| ||||||| ||||| |||||||||||    
T  7311666 aaaattgtagtttttgtacttgggaggccaatattgcaagtttttgaaagttagggg 7311610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 162 - 286
Target Start/End: Original strand, 33160258 - 33160384
Alignment:
Q  162 gtcaaaattgactaaaaagatcaaagatgcagagaggctaaatcttaaagg-tcaaaattgtaatttttgtacatagaaggccaaaattgcaacttttta 260  Q
    |||||||||| |||||| ||| |||| ||||  | ||||||||||||| || ||||||||||| ||| | ||| |||  ||| |||||||||| |||||     
T  33160258 gtcaaaattggctaaaaggattaaagttgcaatg-ggctaaatcttaaggggtcaaaattgtagtttctatacttagggggctaaaattgcaagtttttg 33160356  T
Q  261 aaagtta--ggggaaaaagtgcacttta 286  Q
    ||| |||  |||| ||||||||||||||    
T  33160357 aaaattaaggggggaaaagtgcacttta 33160384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 66; Significance: 5e-29; HSPs: 38)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 124 - 291
Target Start/End: Original strand, 43378646 - 43378815
Alignment:
Q  124 tatttacacacatggcatgccacacatgcgttgactttgtcaaaattgactaaaaagatcaaagatgcagagaggctaaatctta-aaggtcaaaattgt 222  Q
    ||||||||||| |||||||||||| |||||||||||| |||||||| ||| |||| ||| ||||||||| ||  |||||||||||   ||||||||||||    
T  43378646 tatttacacacgtggcatgccacatatgcgttgacttggtcaaaatcgaccaaaaggattaaagatgcaaaggtgctaaatcttaggtggtcaaaattgt 43378745  T
Q  223 aatttttgtacatagaaggccaaaattgcaactttttaaaagttagggga-aaaagtgcactttaacctt 291  Q
    ||||||||||| |||  |  |||||||| || ||||| ||||||| | || |||||||||||||||||||    
T  43378746 aatttttgtacttaggggatcaaaattgtaagtttttgaaagttaagagagaaaagtgcactttaacctt 43378815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 122 - 291
Target Start/End: Complemental strand, 52275138 - 52274966
Alignment:
Q  122 attatttacacacatggcatgccacacatgcgttgactttgtcaaaattgactaaaaagatcaaagatgcagagaggctaaatcttaaagg-tcaaaatt 220  Q
    ||||||||||||| ||||||||||| || ||||||||| ||||||||||||| |||| |||||||  ||||  ||||||||||||||  ||  |||||||    
T  52275138 attatttacacacttggcatgccacgcaggcgttgactatgtcaaaattgaccaaaaggatcaaatttgcaatgaggctaaatcttaggggcccaaaatt 52275039  T
Q  221 gtaatttttgtacatagaaggccaaaattgcaactttttaaaagtta--ggggaaaaagtgcactttaacctt 291  Q
    ||| ||||||||| |||  || ||||||||||| ||||| |||||||  |||| |||||||||||||| ||||    
T  52275038 gtagtttttgtacttagggggtcaaaattgcaagtttttgaaagttaggggggtaaaagtgcactttagcctt 52274966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 122 - 286
Target Start/End: Complemental strand, 24422970 - 24422803
Alignment:
Q  122 attatttacacacatggcatgccacacatgcgttgactttgtcaaaattgactaaaaagatcaaagatgcagagaggctaaatctta-aaggtcaaaatt 220  Q
    ||||||||||||| |||||||||||||| ||||||||| ||||||||||||| |||| |||||||  ||||  | ||||||||||||   || |||||||    
T  24422970 attatttacacacgtggcatgccacacaggcgttgactatgtcaaaattgaccaaaaggatcaaatttgcaatggggctaaatcttagggggccaaaatt 24422871  T
Q  221 gtaatttttgtacatagaaggccaaaattgcaactttttaaaagtta--ggggaaaaagtgcacttta 286  Q
    ||| ||||||||| |||  || ||||||||||| ||||| |||||||  |||| ||||||||||||||    
T  24422870 gtagtttttgtacttagggggtcaaaattgcaagtttttgaaagttaagggggtaaaagtgcacttta 24422803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 127 - 291
Target Start/End: Original strand, 39153053 - 39153219
Alignment:
Q  127 ttacacacatggcatgccacacatgcgttgactttgtcaaaattgactaaaaagatcaaagatgcagagaggctaaatcttaaagg-tcaaaattgtaat 225  Q
    |||||||| |||||||||||  | || ||||||  |||||||||||| |||| || |||||||||| || || ||||||||| ||| ||||||||||| |    
T  39153053 ttacacacgtggcatgccacgtaggcattgactg-gtcaaaattgaccaaaaggaccaaagatgcaaaggggttaaatcttagagggtcaaaattgtagt 39153151  T
Q  226 ttttgtacatagaaggccaaaattgcaactttttaaaagtta--ggggaaaaagtgcactttaacctt 291  Q
    |||||||||||   |||||||||||||| ||||| ||| |||  ||||||||||||||||||||||||    
T  39153152 ttttgtacataaggggccaaaattgcaagtttttgaaacttaagggggaaaaagtgcactttaacctt 39153219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 151 - 286
Target Start/End: Complemental strand, 51684507 - 51684369
Alignment:
Q  151 gcgttgactttgtcaaaattgactaaaaagatcaaagatgcagagaggctaaatcttaaaggtc-aaaattgtaatttttgtacatagaaggccaaaatt 249  Q
    |||||||||| |||||||||| | |||| || |||||||||| || ||||||||||||  || | ||||||||| ||||| |||||||  ||||||||||    
T  51684507 gcgttgacttggtcaaaattggccaaaaggaccaaagatgcaaaggggctaaatcttagggggccaaaattgtagtttttatacatagggggccaaaatt 51684408  T
Q  250 gcaactttttaaaagtta--ggggaaaaagtgcacttta 286  Q
    ||||||||||||||||||  |||| ||||||||||||||    
T  51684407 gcaactttttaaaagttaaggggggaaaagtgcacttta 51684369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 162 - 290
Target Start/End: Complemental strand, 39152061 - 39151930
Alignment:
Q  162 gtcaaaattgactaaaaagatcaaagatgcagagaggctaaatcttaaag-gtcaaaattgtaatttttgtacatagaaggccaaaattgcaacttttta 260  Q
    |||||||||||| |||| || |||||||||| || || |||||||||||| |||||||||||| |||||||||||||  |||||||||| ||| |||||     
T  39152061 gtcaaaattgaccaaaaggaccaaagatgcaaaggggttaaatcttaaagagtcaaaattgtagtttttgtacatagggggccaaaattacaagtttttg 39151962  T
Q  261 aaagtta--ggggaaaaagtgcactttaacct 290  Q
    ||| |||  ||||||||| |||||||||||||    
T  39151961 aaacttaagggggaaaaaatgcactttaacct 39151930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 162 - 291
Target Start/End: Original strand, 45157180 - 45157311
Alignment:
Q  162 gtcaaaattgactaaaaagatcaaagatgcagagaggctaaatcttaaagg-tcaaaattgtaatttttgtacatagaaggccaaaattgcaacttttta 260  Q
    |||||||||||| |||| || |||||||||| || || ||||||||||||| ||||||||||| |||||||||||||  |||||||||||||| |||||     
T  45157180 gtcaaaattgaccaaaaggaccaaagatgcaaaggggttaaatcttaaagggtcaaaattgtagtttttgtacatagggggccaaaattgcaagtttttg 45157279  T
Q  261 aaagtta-ggggaaaaagtgcactttaacctt 291  Q
    ||| ||| ||||  ||||||||||||| ||||    
T  45157280 aaacttagggggggaaagtgcactttagcctt 45157311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 151 - 286
Target Start/End: Original strand, 51685725 - 51685863
Alignment:
Q  151 gcgttgactttgtcaaaattgactaaaaagatcaaagatgcagagaggctaaatcttaaagg-tcaaaattgtaatttttgtacatagaaggccaaaatt 249  Q
    ||||||| || || ||||||| | |||| || |||||||||| || ||||||||||||  || ||||||||||| |||||||||||||| |||||||||     
T  51685725 gcgttgaattggttaaaattggccaaaaggaccaaagatgcaaaggggctaaatcttagggggtcaaaattgtagtttttgtacatagagggccaaaatc 51685824  T
Q  250 gcaactttttaaaagtt--aggggaaaaagtgcacttta 286  Q
    |||||||||| ||||||  ||||| ||||||||||||||    
T  51685825 gcaactttttgaaagttagagggggaaaagtgcacttta 51685863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 162 - 290
Target Start/End: Complemental strand, 43058915 - 43058785
Alignment:
Q  162 gtcaaaattgactaaaaagatcaaagatgcagagaggctaaatcttaaaggtc-aaaattgtaatttttgtacatagaaggccaaaattgcaacttttta 260  Q
    |||||||||||| |||| ||||||||||| | || |||||||||||| ||| | ||||||||| ||||||||| |||  || ||||||||||| |||||     
T  43058915 gtcaaaattgaccaaaaggatcaaagatgtaaaggggctaaatcttagagggctaaaattgtagtttttgtacttagggggtcaaaattgcaagtttttc 43058816  T
Q  261 aaagtta-ggggaaaaagtgcactttaacct 290  Q
    ||||||| |||||||||||| ||||||||||    
T  43058815 aaagttagggggaaaaagtgtactttaacct 43058785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 122 - 263
Target Start/End: Complemental strand, 43377890 - 43377748
Alignment:
Q  122 attatttacacacatggcatgccacacatgcgttgactttgtcaaaattgactaaaaagatcaaagatgcagagaggctaaatctta-aaggtcaaaatt 220  Q
    ||||||||||||| ||||||||||||||||||||||||| |||||||||||| |||| |||||||| || | |||| |||||| |||  ||| |||||||    
T  43377890 attatttacacacgtggcatgccacacatgcgttgacttggtcaaaattgaccaaaaggatcaaaggtgtaaagagactaaattttaggaggccaaaatt 43377791  T
Q  221 gtaatttttgtacatagaaggccaaaattgcaactttttaaaa 263  Q
     |||||||| ||| || | | | |||||||||| | |||||||    
T  43377790 ataatttttatacttaaaggactaaaattgcaagtgtttaaaa 43377748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 119 - 286
Target Start/End: Original strand, 36613832 - 36614002
Alignment:
Q  119 ttaattatttacacacatggcatgccacacatgcgttgactttgtcaaaattgactaaaaagatcaaagatgcagagaggctaaatcttaaagg-tcaaa 217  Q
    ||||||| |||||||| |||| ||||||  | ||||||| |  |||||||||||  |||| ||  |||| |||| |||||||||||||||  || |||||    
T  36613832 ttaattaattacacacgtggcctgccacgtaggcgttgaataagtcaaaattgatcaaaaggactaaagttgcaaagaggctaaatcttagggggtcaaa 36613931  T
Q  218 attgtaatttttgtacatagaaggccaaaattgcaactttttaaaagttagggga--aaaagtgcacttta 286  Q
    |||||| ||||||||| |||  |||||||||| ||| ||||||||||||||||||  |||| |||||||||    
T  36613932 attgtagtttttgtacttagggggccaaaattacaagtttttaaaagttaggggaggaaaaatgcacttta 36614002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 162 - 287
Target Start/End: Complemental strand, 45156179 - 45156051
Alignment:
Q  162 gtcaaaattgactaaaaagatcaaagatgcagagaggctaaatcttaaagg-tcaaaattgtaatttttgtacatagaaggccaaaattgcaacttttta 260  Q
    |||||||||||| ||||||| ||||||| || ||||| ||||||||| ||| | ||||||||| ||||||||||||||||| |||||||| || |||||     
T  45156179 gtcaaaattgaccaaaaagaccaaagatacaaagaggttaaatcttagagggttaaaattgtagtttttgtacatagaaggtcaaaattgtaagtttttg 45156080  T
Q  261 aaagttagggga--aaaagtgcactttaa 287  Q
    ||| ||| ||||  ||||||| |||||||    
T  45156079 aaacttaagggaggaaaagtgaactttaa 45156051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 151 - 284
Target Start/End: Complemental strand, 46066663 - 46066530
Alignment:
Q  151 gcgttgactttgtcaaaattgactaaaaagatcaaagatgcagagaggctaaatcttaaaggtcaaaattgtaatttttgtacatagaaggccaaaattg 250  Q
    ||||||| || |||||||||||  |||||||||| ||||||| |  ||||||||||||  ||  ||||||||| ||||||||||||   ||| ||||| |    
T  46066663 gcgttgagttggtcaaaattgatcaaaaagatcagagatgcaaattggctaaatcttaggggctaaaattgtagtttttgtacataaggggctaaaatcg 46066564  T
Q  251 caactttttaaaagttaggggaaaaagtgcactt 284  Q
    ||||||||| ||||||||| | ||||||||||||    
T  46066563 caactttttgaaagttaggaggaaaagtgcactt 46066530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 119 - 291
Target Start/End: Complemental strand, 11436215 - 11436040
Alignment:
Q  119 ttaattatttacacacatggcatgccacacatgcgttgactttgtcaaaattgactaaaaagatcaaagatgcagagaggctaaatcttaaaggtc-aaa 217  Q
    ||||||| |||||||  |||||||||||  | |||||||||  |||||||||||| ||||  | |||||||||| |  || |||||||||  || | |||    
T  11436215 ttaattaattacacatgtggcatgccacttaggcgttgactcggtcaaaattgaccaaaagaaccaaagatgcaaatgggttaaatcttagggggccaaa 11436116  T
Q  218 attgtaatttttgtacatagaaggccaaaattgcaactttttaaaagtt--aggggaaaaagtgcactttaacctt 291  Q
    |||||| ||||| ||| || |||||||||||||||| ||||| ||||||  ||||| |||||||||||||| ||||    
T  11436115 attgtagtttttatacttaaaaggccaaaattgcaagtttttgaaagttaaagggggaaaagtgcactttagcctt 11436040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 127 - 291
Target Start/End: Complemental strand, 35594380 - 35594215
Alignment:
Q  127 ttacacacatggcatgccacacatgcgttgactttgtcaaaattgactaaaaagatcaaagatgcagagaggctaaatcttaaaggtcaaaattgtaatt 226  Q
    |||||||| |||||||||| | | ||||||||   |||||||||| |||||| || |||||||||| || |||||||| |||  ||||||||||||| ||    
T  35594380 ttacacacgtggcatgccaaataagcgttgaccaagtcaaaattggctaaaaggaccaaagatgcaaaggggctaaattttaggggtcaaaattgtagtt 35594281  T
Q  227 tttgtacatagaaggccaaaattgcaactttttaaaagttaggg--gaaaaagtgcactttaacctt 291  Q
    ||  ||| |||  || ||||||||||| ||||| ||||||||||  | |||||||||||||| ||||    
T  35594280 ttaatacttag-gggtcaaaattgcaagtttttgaaagttaggggtggaaaagtgcactttagcctt 35594215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 122 - 291
Target Start/End: Original strand, 24426007 - 24426178
Alignment:
Q  122 attatttacacacatggcatgccacacatgcgttgactttgtcaaaattgactaaaaagatcaaagatgcagagaggctaaatcttaaaggtc-aaaatt 220  Q
    ||||||||||| | ||||||||||  || |||||||||  |||||||||||| ||||  ||||||  ||||  | ||||||||||||  || | ||||||    
T  24426007 attatttacacgc-tggcatgccatgcaagcgttgactaggtcaaaattgaccaaaagtatcaaatttgcaatggggctaaatcttaggggactaaaatt 24426105  T
Q  221 gtaatttttgtacatagaaggccaaaattgcaactttttaaaagtt--aggggaaaaagtgcactttaacctt 291  Q
    ||| ||||||||| |||  |||||||||||||| ||||| ||||||  |||||  ||||||||||||||||||    
T  24426106 gtagtttttgtacttagggggccaaaattgcaagtttttgaaagttagaggggggaaagtgcactttaacctt 24426178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 151 - 267
Target Start/End: Original strand, 30249450 - 30249567
Alignment:
Q  151 gcgttgactttgtcaaaattgactaaaaagatcaaagatgcagagaggctaaatcttaaagg-tcaaaattgtaatttttgtacatagaaggccaaaatt 249  Q
    |||||||||  |||||||||||  ||||||||||||||| || |   |||||||||||| || ||||||||||| |||||||||||| |||  |||||||    
T  30249450 gcgttgactaagtcaaaattgatcaaaaagatcaaagatacaaatgagctaaatcttaaggggtcaaaattgtagtttttgtacataaaagatcaaaatt 30249549  T
Q  250 gcaactttttaaaagtta 267  Q
     ||||||||| |||||||    
T  30249550 acaactttttgaaagtta 30249567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 162 - 289
Target Start/End: Complemental strand, 40384855 - 40384724
Alignment:
Q  162 gtcaaaattgactaaaaagatcaaagatgcagagaggctaaatcttaaagg-tcaaaattgtaatttttgtacatagaaggccaaaattgcaacttttta 260  Q
    |||||||||| | |||| || |||||||||| ||||||||||| |||  || ||||||||||| ||||||||||||| || | ||||||||||||||||     
T  40384855 gtcaaaattggccaaaaggaccaaagatgcaaagaggctaaattttaggggatcaaaattgtagtttttgtacataggagactaaaattgcaactttttg 40384756  T
Q  261 aaagtta---ggggaaaaagtgcactttaacc 289  Q
    ||| |||    || ||||||||||||||||||    
T  40384755 aaaattaaagaggaaaaaagtgcactttaacc 40384724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 162 - 290
Target Start/End: Original strand, 45149941 - 45150072
Alignment:
Q  162 gtcaaaattgactaaaaagatcaaagatgcagagaggctaaatcttaaaggt--caaaattgtaatttttgtacatagaaggccaaaattgcaacttttt 259  Q
    |||||||||| | |||| ||||||||||||| || ||||||||||||  ||   |||||||||  ||||||||| ||   |||||||||||||| |||||    
T  45149941 gtcaaaattggccaaaaggatcaaagatgcaaaggggctaaatcttagggggggcaaaattgttgtttttgtacttaaggggccaaaattgcaagttttt 45150040  T
Q  260 aaaagtta-ggggaaaaagtgcactttaacct 290  Q
     ||||||| |||| ||||||||||||||||||    
T  45150041 gaaagttaggggggaaaagtgcactttaacct 45150072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 131 - 286
Target Start/End: Original strand, 11437139 - 11437297
Alignment:
Q  131 acacatggcatgccacacatgcgttgactttgtcaaaattgactaaaaagatcaaagatgcagagaggctaaatctta-aaggtcaaaattgtaattttt 229  Q
    |||| |||||||||||  | |||||||||  |||||||||||| |||| ||||||||||| | |  || |||||||||   || |||||||||| |||||    
T  11437139 acacgtggcatgccacttaagcgttgactcggtcaaaattgaccaaaaggatcaaagatgtaaaagggttaaatcttagggggccaaaattgtagttttt 11437238  T
Q  230 gtacatagaaggccaaaattgcaactttttaaaagtta--ggggaaaaagtgcacttta 286  Q
    |||| ||   | |||||||||||| ||||| |||||||  |||||||||||||||||||    
T  11437239 gtacttaagggaccaaaattgcaagtttttgaaagttaagggggaaaaagtgcacttta 11437297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 119 - 290
Target Start/End: Complemental strand, 50680504 - 50680331
Alignment:
Q  119 ttaattatttacacacatggcatgccacacatgcgttgactttgtcaaaattgactaaaaagatcaaagatgcagagaggctaaatcttaaaggtc-aaa 217  Q
    ||||||| |||||||| |||| ||| ||  | ||||||| |  |||||||||||| |||| ||||||||||||| || || |||||||||  || | |||    
T  50680504 ttaattaattacacacgtggcctgctacgtaggcgttgaataagtcaaaattgaccaaaaggatcaaagatgcaaaggggttaaatcttaggggactaaa 50680405  T
Q  218 attgtaatttttgtacatagaaggccaaaattgcaactttttaaaagtt-aggggaaaaagtgcactttaacct 290  Q
    ||| || ||||| ||| |||  |||||||||||||| |||||  ||||| ||||| |||| |||||||||||||    
T  50680404 attatagtttttatacttagggggccaaaattgcaagtttttggaagttaagggggaaaaatgcactttaacct 50680331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 127 - 286
Target Start/End: Original strand, 35595128 - 35595291
Alignment:
Q  127 ttacacacatggcatgccacacatgcgttgactttgtcaaaattgactaaaaagatcaaagatgcagagaggctaaatcttaaaggtcaaaattg-taat 225  Q
    |||||||| |||||||||| |   || ||||||| |||||||||||| |||| || |||||||||| || ||||||||||||  || |||||||| || |    
T  35595128 ttacacacgtggcatgccaaatcagcattgacttggtcaaaattgaccaaaaggaccaaagatgcaaaggggctaaatcttaggggccaaaattgttagt 35595227  T
Q  226 ttttgtacatagaaggccaaaattgc-aactttttaaaagtt--aggggaaaaagtgcacttta 286  Q
    |||| |||||||  || ||||||||| || ||||| ||||||  ||||| |||||| |||||||    
T  35595228 ttttatacatagggggtcaaaattgctaagttttttaaagttagagggggaaaagtacacttta 35595291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 162 - 291
Target Start/End: Complemental strand, 39698692 - 39698561
Alignment:
Q  162 gtcaaaattgactaaaaagatcaaagatgcagagaggctaaatcttaaaggtcaaaattgtaatttttgtacatagaaggccaaaattgcaactttttaa 261  Q
    |||||||||||| |||| ||| |||| ||||  ||||||||||||||  || ||||||| || ||| ||||| |||  ||||||||||| || |||||||    
T  39698692 gtcaaaattgaccaaaaggattaaagttgcaacgaggctaaatcttagtggccaaaattatagtttctgtacttagggggccaaaattgaaagtttttaa 39698593  T
Q  262 aagtta--ggggaaaaagtgcactttaacctt 291  Q
    ||||||  ||||  ||||||||||||| ||||    
T  39698592 aagttaaggggggtaaagtgcactttagcctt 39698561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 119 - 291
Target Start/End: Original strand, 37526806 - 37526980
Alignment:
Q  119 ttaattatttacacacatggcatgccacacatgcgttgactttgtcaaaattgactaaaaagatcaaagatgcagagaggctaaatcttaaaggtcaaaa 218  Q
    ||||||| |||||||| |||| | ||||  | ||||||| |  |||||||||||  ||||||| |||||||||| || ||||||||||||  || |||||    
T  37526806 ttaattaattacacacgtggcctaccacgtaggcgttgaataagtcaaaattgatcaaaaagaccaaagatgcaaaggggctaaatcttaggggccaaaa 37526905  T
Q  219 ttgtaatttttgtacatagaaggccaaaattgcaactttttaaaagtta--ggggaaaaagtgcactttaacctt 291  Q
    ||||  ||| | ||  |||   ||||||||||||| ||||| |||||||  |||| |||||| ||||||||||||    
T  37526906 ttgtggtttctatatttagggagccaaaattgcaagtttttgaaagttaaggggggaaaagtacactttaacctt 37526980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 162 - 286
Target Start/End: Complemental strand, 31194183 - 31194058
Alignment:
Q  162 gtcaaaattgactaaaaagatcaaagatgcagagaggctaaatcttaaaggtc-aaaattgtaatttttgtacatagaaggccaaaattgcaacttttta 260  Q
    |||| ||||| | |||| || |||||||||| | ||||||||||||||||| | |||||| || |||||||||||    ||||||| | | |||||||||    
T  31194183 gtcagaattggcaaaaaggaccaaagatgcaaaaaggctaaatcttaaagggccaaaattttagtttttgtacatgtggggccaaattcgtaacttttta 31194084  T
Q  261 aaagttaggggaaaaagtgcacttta 286  Q
    ||||||||||  |||||||| |||||    
T  31194083 aaagttagggtgaaaagtgcccttta 31194058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 119 - 286
Target Start/End: Original strand, 39222401 - 39222572
Alignment:
Q  119 ttaattatttacacacatggcatgccacacatgcgttgactttgtcaaaattgactaaaaagatcaaagatgcagagaggctaaatcttaaaggtcaaa- 217  Q
    ||||||| ||| |||| || ||||||||  | ||||||| |  |||||||||| | ||||||| |||||||||| |  ||| |||||||| ||| | ||     
T  39222401 ttaattaattatacacgtgtcatgccacgtaggcgttgaataagtcaaaattgcccaaaaagaccaaagatgcaaatgggcaaaatcttagagggctaac 39222500  T
Q  218 attgtaatttttgtacatagaaggccaaaattgcaactttttaaaagtta---ggggaaaaagtgcacttta 286  Q
    |||||| ||||| ||| |||  |||||||||||||| ||||| |||||||   |||| ||||||||||||||    
T  39222501 attgtagtttttatacttagggggccaaaattgcaagtttttgaaagttaaagggggtaaaagtgcacttta 39222572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 122 - 271
Target Start/End: Complemental strand, 14999450 - 14999304
Alignment:
Q  122 attatttacacacatggcatgccacacatgcgttgactttgtcaaaattgactaaaaagatcaaagatgcagagaggctaaatcttaaagg-tcaaaatt 220  Q
    |||| ||||||||||||||||||||  | || |||||   |||||||||||| |||| |||||||| ||||||   |||||||   | ||| ||||||||    
T  14999450 attagttacacacatggcatgccacgtaggcattgaccg-gtcaaaattgacaaaaaggatcaaagttgcagatgagctaaat---agaggatcaaaatt 14999355  T
Q  221 gtaatttttgtacatagaaggccaaaattgcaactttttaaaagttagggg 271  Q
    ||| ||||||||| |||  || ||||||||||| ||||| |||||||||||    
T  14999354 gtagtttttgtacttagggggtcaaaattgcaagtttttgaaagttagggg 14999304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 122 - 290
Target Start/End: Original strand, 52276094 - 52276265
Alignment:
Q  122 attatttacacacatggcatgccacacatgcgttgactttgtcaaaattgactaaaaagatcaaagatgcagagaggctaaatcttaaaggtc-aaaatt 220  Q
    ||||||||||| | ||||||||||  || |||||||||  |||||||||||  |||| |||||||  ||||  | ||||||||||||  || | ||| ||    
T  52276094 attatttacacgcgtggcatgccatgcaagcgttgactaggtcaaaattgatcaaaaggatcaaatttgcaatggggctaaatcttaggggactaaattt 52276193  T
Q  221 gtaatttttgtacatagaaggccaaaattgcaactttttaaaagttag--gggaaaaagtgcactttaacct 290  Q
     || ||||||||| |||  |||||||||| ||| ||||| ||||||||  |||  |||||||||||||||||    
T  52276194 atagtttttgtacttagggggccaaaattacaaatttttgaaagttagaagggggaaagtgcactttaacct 52276265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 183 - 267
Target Start/End: Original strand, 7675451 - 7675536
Alignment:
Q  183 caaagatgcagagaggctaaatcttaaagg-tcaaaattgtaatttttgtacatagaaggccaaaattgcaactttttaaaagtta 267  Q
    |||||||||| || ||||||||||||  || |||||||| |||||||| ||| ||| ||| ||||||||||| ||||| |||||||    
T  7675451 caaagatgcaaaggggctaaatcttagggggtcaaaattataatttttttacttaggagggcaaaattgcaagtttttgaaagtta 7675536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 119 - 204
Target Start/End: Complemental strand, 39221487 - 39221402
Alignment:
Q  119 ttaattatttacacacatggcatgccacacatgcgttgactttgtcaaaattgactaaaaagatcaaagatgcagagaggctaaat 204  Q
    ||||||| |||||||| |||| ||||||  | ||||||| || |||||||||||| |||| || |||||||||| || ||||||||    
T  39221487 ttaattaattacacacgtggcctgccacgtaggcgttgaattagtcaaaattgaccaaaaggaccaaagatgcaaaggggctaaat 39221402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 162 - 286
Target Start/End: Complemental strand, 45148710 - 45148584
Alignment:
Q  162 gtcaaaattgactaaaaagatcaaagatgcagagaggctaaatcttaaaggt-caaaattgtaatttttgtacatagaaggccaaaattgcaacttttta 260  Q
    |||||||||| | |||| || |||||||||| || || |||||||||  ||  |||||||||| ||||| ||| |||  |||||||||||||| |||||     
T  45148710 gtcaaaattggccaaaaggaccaaagatgcaaaggggttaaatcttaggggggcaaaattgtagttttt-tacttagggggccaaaattgcaagtttttg 45148612  T
Q  261 aaagtta--ggggaaaaagtgcacttta 286  Q
    |||||||   ||||||||||||||||||    
T  45148611 aaagttaagcgggaaaaagtgcacttta 45148584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 212 - 271
Target Start/End: Complemental strand, 7674605 - 7674547
Alignment:
Q  212 gtcaaaattgtaatttttgtacatagaaggccaaaattgcaactttttaaaagttagggg 271  Q
    |||||||||||| ||||||||| |||  | |||||||||||| |||||||||||||||||    
T  7674605 gtcaaaattgtagtttttgtacttagg-gcccaaaattgcaagtttttaaaagttagggg 7674547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 240 - 286
Target Start/End: Complemental strand, 41364879 - 41364832
Alignment:
Q  240 ggccaaaattgcaactttttaaaagttagggga-aaaagtgcacttta 286  Q
    |||||||||||||| ||||| |||||||||||| ||||||||||||||    
T  41364879 ggccaaaattgcaagtttttgaaagttaggggagaaaagtgcacttta 41364832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 162 - 268
Target Start/End: Original strand, 43059977 - 43060084
Alignment:
Q  162 gtcaaaattgactaaaaagatcaaagatgcagagaggctaaatcttaaagg-tcaaaattgtaatttttgtacatagaaggccaaaattgcaacttttta 260  Q
    |||||||||||| |||| || |||||||||| |   |||||||||||| || ||||||||||| ||||||||| ||   || ||||||| ||| |||||     
T  43059977 gtcaaaattgaccaaaaggaccaaagatgcaaatgagctaaatcttaaggggtcaaaattgtagtttttgtacttaaggggtcaaaatttcaaatttttg 43060076  T
Q  261 aaagttag 268  Q
    ||||||||    
T  43060077 aaagttag 43060084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 162 - 286
Target Start/End: Original strand, 39699738 - 39699864
Alignment:
Q  162 gtcaaaattgactaaaaagatcaaagatgcagagaggctaaatcttaaaggtc-aaaattgtaatttttgtacatagaaggccaaaattgcaacttttta 260  Q
    |||||||||||| |||| ||| |||| ||||  | ||||||||||||  || | ||||||||| ||| ||||| |||  || ||||||||||| || ||     
T  39699738 gtcaaaattgaccaaaaggattaaagttgcaatggggctaaatcttagggggccaaaattgtagtttctgtacttagggggtcaaaattgcaagttattg 39699837  T
Q  261 aaagtta-ggggaaaaagtgcacttta 286  Q
    ||||||| |||| ||||||||||||||    
T  39699838 aaagttaggggggaaaagtgcacttta 39699864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 214 - 290
Target Start/End: Complemental strand, 7983126 - 7983049
Alignment:
Q  214 caaaattgtaatttttgtacatagaaggccaaaattgcaactttttaaaagttagggga-aaaagtgcactttaacct 290  Q
    |||||||||  ||||  |||||||  |||||||||||||| || || ||||||| |||| ||||||||||||||||||    
T  7983126 caaaattgtggttttgatacatagggggccaaaattgcaagttgttgaaagttacgggagaaaagtgcactttaacct 7983049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 235
Target Start/End: Complemental strand, 30248241 - 30248168
Alignment:
Q  162 gtcaaaattgactaaaaagatcaaagatgcagagaggctaaatcttaaaggtcaaaattgtaatttttgtacat 235  Q
    |||||||||| | |||| ||||||||||||| ||  | ||||||||| |||  ||||||||| |||||||||||    
T  30248241 gtcaaaattggccaaaatgatcaaagatgcaaaggagttaaatcttagagggtaaaattgtagtttttgtacat 30248168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 127 - 208
Target Start/End: Original strand, 46525737 - 46525817
Alignment:
Q  127 ttacacacatggcatgccacacatgcgttgactttgtcaaaattgactaaaaagatcaaagatgcagagaggctaaatctta 208  Q
    |||||||| |||||||||| | | |||||||||| ||||||||||||  ||||||||| |  |||| || ||||||||||||    
T  46525737 ttacacacgtggcatgccaaataagcgttgacttggtcaaaattgac-caaaagatcacaattgcaaaggggctaaatctta 46525817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 63; Significance: 3e-27; HSPs: 40)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 122 - 286
Target Start/End: Complemental strand, 8456647 - 8456481
Alignment:
Q  122 attatttacacacatggcatgccacacatgcgttgactttgtcaaaattgactaaaaagatcaaagatgcagagaggctaaatctta-aaggtcaaaatt 220  Q
    ||||||||||||| ||||||||||| || |||||||||  ||||||||||||||||| |||||||  ||||  ||||||||||||||   || |||||||    
T  8456647 attatttacacacgtggcatgccacgcaggcgttgactaggtcaaaattgactaaaaggatcaaatttgcaatgaggctaaatcttagggggccaaaatt 8456548  T
Q  221 gtaatttttgtacatagaaggccaaaattgcaactttttaaaagtta-ggggaaaaagtgcacttta 286  Q
    ||| ||||||||  |||  | |||||||||||| ||||| ||| ||| |||||||||||||||||||    
T  8456547 gtagtttttgtatttaggggaccaaaattgcaagtttttgaaaattagggggaaaaagtgcacttta 8456481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 122 - 267
Target Start/End: Complemental strand, 23770026 - 23769881
Alignment:
Q  122 attatttacacacatggcatgccacacatgcgttgactttgtcaaaattgactaaaaagatcaaagatgcagagaggctaaatcttaaaggtcaaaattg 221  Q
    ||||||||||||  ||||||||||||||| ||||||||| |||||||||||| |||| || |||||||||| |   || ||||||||  |||||||||||    
T  23770026 attatttacacatgtggcatgccacacatacgttgacttggtcaaaattgaccaaaaggaccaaagatgcaaatgagcgaaatcttaggggtcaaaattg 23769927  T
Q  222 taatttttgtacatagaaggccaaaattgcaactttttaaaagtta 267  Q
    || |||||| ||||||| |   ||||||||||||| || |||||||    
T  23769926 tagtttttgcacatagaggattaaaattgcaacttgttgaaagtta 23769881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 119 - 286
Target Start/End: Complemental strand, 12700346 - 12700178
Alignment:
Q  119 ttaattatttacacacatggcatgccacacatgcgttgactttgtcaaaattgactaaaaagatcaaagatgcagagaggctaaatcttaaagg-tcaaa 217  Q
    ||||||| |||||||| |||| ||||||  | ||||||| |  |||||||||||| |||| || ||||||||||  | ||||||||| ||  || |||||    
T  12700346 ttaattaattacacacgtggcctgccacgtaggcgttgaataagtcaaaattgaccaaaaggaccaaagatgcaatgtggctaaatcatagggggtcaaa 12700247  T
Q  218 attgtaatttttgtacatagaaggccaaaattgcaactttttaaaagttaggggaaaaagtgcacttta 286  Q
    |||||| ||||||||| |||  |||||||||||||| ||||| |||||||||||  |||||||||||||    
T  12700246 attgtagtttttgtacttagggggccaaaattgcaagtttttgaaagttaggggggaaagtgcacttta 12700178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 162 - 286
Target Start/End: Complemental strand, 19984979 - 19984852
Alignment:
Q  162 gtcaaaattgactaaaaagatcaaagatgcagagaggctaaatcttaaagg-tcaaaattgtaatttttgtacatagaaggccaaaattgcaacttttta 260  Q
    |||||||||||| |||| || |||||||||| || || ||||||||||||| ||||||||||| |||||||||||||  |||||||||||||| |||||     
T  19984979 gtcaaaattgaccaaaaggaccaaagatgcaaaggggttaaatcttaaagggtcaaaattgtagtttttgtacatagggggccaaaattgcaagtttttg 19984880  T
Q  261 aaagtta--ggggaaaaagtgcacttta 286  Q
    ||| |||  |||| ||||||||||||||    
T  19984879 aaacttagggggggaaaagtgcacttta 19984852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 162 - 291
Target Start/End: Original strand, 54986978 - 54987108
Alignment:
Q  162 gtcaaaattgactaaaaagatcaaagatgcagagaggctaaatcttaaagg-tcaaaattgtaatttttgtacatagaaggccaaaattgcaacttttta 260  Q
    |||||||||| | |||| ||||||||||||| ||  ||||||||||| ||| |||||||| || ||||| |||||||  | | ||||| ||||||||||     
T  54986978 gtcaaaattggccaaaatgatcaaagatgcaaaggagctaaatcttagagggtcaaaattatagtttttatacataggggactaaaatcgcaactttttg 54987077  T
Q  261 aaagttaggggaaaaagtgcactttaacctt 291  Q
    ||| ||||||| |||||||||||||||||||    
T  54987078 aaacttagggggaaaagtgcactttaacctt 54987108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 123 - 289
Target Start/End: Original strand, 23770339 - 23770508
Alignment:
Q  123 ttatttacacacatggcatgccacacatgcgttgactttgtcaaaattgactaaaaagatcaaagatgcagagaggctaaatcttaaaggtc-aaaattg 221  Q
    |||||| ||||| |||||||||||| |||||||||||| |||||| ||||| |||| ||  ||||||||| || || |||||||||  || | |||||||    
T  23770339 ttatttgcacacgtggcatgccacatatgcgttgacttggtcaaagttgaccaaaaggactaaagatgcaaaggggttaaatcttagggggctaaaattg 23770438  T
Q  222 taatttttgtacatagaaggccaaaattgcaac-tttttaaaagttagggga-aaaagtgcactttaacc 289  Q
    || ||||||||||||   | ||||||||| ||| ||||||||| | |||||| |||| ||||||||||||    
T  23770439 tagtttttgtacataagggaccaaaattgtaacttttttaaaattaaggggagaaaattgcactttaacc 23770508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 151 - 291
Target Start/End: Original strand, 46721180 - 46721323
Alignment:
Q  151 gcgttgactttgtcaaaattgactaaaaagatcaaagatgcagagaggctaaatcttaaaggtc-aaaattgtaatttttgtacatagaaggccaaaatt 249  Q
    |||||||||| |||||||||||| | || || |||| ||||| || ||||||||||||  || | ||||||||| |||||||||||||  ||  |||||     
T  46721180 gcgttgacttggtcaaaattgaccagaaggaccaaatatgcaaaggggctaaatcttaggggactaaaattgtagtttttgtacatagggggttaaaatc 46721279  T
Q  250 gcaactttttaaaagttagggg--aaaaagtgcactttaacctt 291  Q
    ||||||||||||||||||||||   |||||||||||||| ||||    
T  46721280 gcaactttttaaaagttagggggagaaaagtgcactttagcctt 46721323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 131 - 286
Target Start/End: Complemental strand, 7758563 - 7758405
Alignment:
Q  131 acacatggcatgccacacatgcgttgactttgtcaaaattgactaaaaagatcaaagatgcagagaggctaaatcttaaaggtc-aaaattgtaattttt 229  Q
    |||| |||||||||||  | |||||||||  |||||||||||| |||| || ||||||| || || || |||||||||  || | ||||||||| |||||    
T  7758563 acacgtggcatgccacttaagcgttgactaggtcaaaattgaccaaaaggaccaaagatacaaaggggttaaatcttagggggcaaaaattgtagttttt 7758464  T
Q  230 gtacatagaaggccaaaattgcaactttttaaaagtta--ggggaaaaagtgcacttta 286  Q
    |||| |||  || ||||||||||| ||||| |||||||  |||||||||||||||||||    
T  7758463 gtacttagggggtcaaaattgcaagtttttgaaagttaagggggaaaaagtgcacttta 7758405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 151 - 286
Target Start/End: Complemental strand, 46720082 - 46719944
Alignment:
Q  151 gcgttgactttgtcaaaattgactaaaaagatcaaagatgcagagaggctaaatcttaaaggtc-aaaattgtaatttttgtacatagaaggccaaaatt 249  Q
    ||||||||||  ||||||||||| |||| || |||| ||||| |  |||||||||||| ||| | ||||||||| ||||| |||||||  |||||||||     
T  46720082 gcgttgacttgatcaaaattgaccaaaaggaccaaatatgcaaatgggctaaatcttagaggactaaaattgtagtttttatacatagggggccaaaatc 46719983  T
Q  250 gcaactttttaaaagtta--ggggaaaaagtgcacttta 286  Q
    ||||||||||||||||||  |||| |||| |||||||||    
T  46719982 gcaactttttaaaagttaaggggggaaaaatgcacttta 46719944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 162 - 290
Target Start/End: Complemental strand, 7267773 - 7267643
Alignment:
Q  162 gtcaaaattgactaaaaagatcaaagatgcagagaggctaaatcttaaaggtc-aaaattgtaatttttgtacatagaaggccaaaattgcaacttttta 260  Q
    |||||||||||| |||| ||| |||| ||||  ||||||||||||||  || | ||||||||| ||| ||||| |||  |||||||||||||| |||||     
T  7267773 gtcaaaattgaccaaaaggattaaagttgcaatgaggctaaatcttagggggccaaaattgtagtttctgtacttagggggccaaaattgcaagtttttg 7267674  T
Q  261 aaagtt-aggggaaaaagtgcactttaacct 290  Q
    |||||| ||||| ||||||||||||||||||    
T  7267673 aaagttaagggggaaaagtgcactttaacct 7267643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 157 - 286
Target Start/End: Complemental strand, 534634 - 534502
Alignment:
Q  157 actttgtcaaaattgactaaaaagatcaaagatgcagagaggctaaatcttaaaggtc-aaaattgtaatttttgtacatagaaggccaaaattgcaact 255  Q
    |||| |||||||||| | |||  || |||||||||| | |||||||||||||  || | ||||||||| ||||||||||||| ||| ||||||||||| |    
T  534634 acttagtcaaaattggccaaatggaccaaagatgcaaataggctaaatcttagggggccaaaattgtagtttttgtacataggaggtcaaaattgcaagt 534535  T
Q  256 ttttaaaagtt--aggggaaaaagtgcacttta 286  Q
    |||| | ||||  ||||||||||||||||||||    
T  534534 ttttgagagttagaggggaaaaagtgcacttta 534502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 119 - 286
Target Start/End: Complemental strand, 47614358 - 47614188
Alignment:
Q  119 ttaattatttacacacatggcatgccacacatgcgttgactttgtcaaaattgactaaaaagatcaaagatgcagagaggctaaatcttaaaggtc-aaa 217  Q
    ||||||| |||||||| |||| ||||||  | ||||||| |  ||||||||| || ||||  | |||||||||| |||||||||||||||  || | |||    
T  47614358 ttaattaattacacacgtggcctgccacgtaggcgttgaataagtcaaaattaaccaaaagcaccaaagatgcaaagaggctaaatcttagggggccaaa 47614259  T
Q  218 attgtaatttttgtacatagaaggccaaaattgcaactttttaaaagtt--aggggaaaaagtgcacttta 286  Q
    |||||  ||||  ||| |||  |||||||||||||| ||||| ||||||  ||||||||||||||||||||    
T  47614258 attgttgttttgatacttagggggccaaaattgcaagtttttgaaagttagaggggaaaaagtgcacttta 47614188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 162 - 291
Target Start/End: Original strand, 54540761 - 54540893
Alignment:
Q  162 gtcaaaattgactaaaaagatcaaagatgcagagaggctaaatctta-aaggtcaaaattgtaatttttgtacatagaaggccaaaattgcaacttttta 260  Q
    |||||||||||| |||| |||||||| |||| || ||||||||||||   || |||||||||| ||||||||| ||   || ||||||||||| |||||     
T  54540761 gtcaaaattgacaaaaaggatcaaagttgcaaaggggctaaatcttagggggccaaaattgtagtttttgtacttaaggggtcaaaattgcaagtttttg 54540860  T
Q  261 aaagtta--ggggaaaaagtgcactttaacctt 291  Q
    |||||||  |||| |||||||||||||| ||||    
T  54540861 aaagttaaggggggaaaagtgcactttagcctt 54540893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 215 - 286
Target Start/End: Complemental strand, 51037611 - 51037539
Alignment:
Q  215 aaaattgtaatttttgtacatagaaggccaaaattgcaactttttaaaagttagggga-aaaagtgcacttta 286  Q
    ||||||||| ||||||| |||||| || ||||||||||||||||| ||||||| |||| ||||||||||||||    
T  51037611 aaaattgtagtttttgttcatagagggtcaaaattgcaactttttgaaagttaagggagaaaagtgcacttta 51037539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 214 - 286
Target Start/End: Original strand, 22776836 - 22776910
Alignment:
Q  214 caaaattgtaatttttgtacatagaaggccaaaattgcaactttttaaaagttaggg--gaaaaagtgcacttta 286  Q
    |||||||||| |||||||||||||  |||||||||||||||||| | ||||||||||  | ||||||||||||||    
T  22776836 caaaattgtagtttttgtacatagggggccaaaattgcaactttctgaaagttaggggtggaaaagtgcacttta 22776910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 198 - 291
Target Start/End: Complemental strand, 49398220 - 49398125
Alignment:
Q  198 gctaaatcttaa-aggtcaaaattgtaatttttgtacatagaaggccaaaattgcaactttttaaaagtt-aggggaaaaagtgcactttaacctt 291  Q
    |||||||||||| ||| |||||||||||||||||| |||||||  |||||||   || ||||||||| || ||||| |||||||||||||||||||    
T  49398220 gctaaatcttaagaggccaaaattgtaatttttgttcatagaacaccaaaataataattttttaaaacttaagggggaaaagtgcactttaacctt 49398125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 127 - 290
Target Start/End: Complemental strand, 51347433 - 51347267
Alignment:
Q  127 ttacacacatggcatgccacacatgcgttgactttgtcaaaattgactaaaaagatcaaagatgcagagaggctaaatcttaaagg-tcaaaattgtaat 225  Q
    |||||||| | || ||||||  |||||||||||  ||||| |||||  |||| |||||||| |||| |  || |||||||||  || |||||||||| ||    
T  51347433 ttacacacgtagcctgccacgtatgcgttgactaggtcaacattgatcaaaatgatcaaagttgcaaacgggttaaatcttagggggtcaaaattgtcat 51347334  T
Q  226 ttttgtacatagaaggccaaaattgcaactttttaaaagtta--ggggaaaaagtgcactttaacct 290  Q
    |||||| |||||| | |||||||||||||||||| ||| |||   |||  |||||||||||||||||    
T  51347333 ttttgttcatagaggaccaaaattgcaactttttcaaacttaagagggggaaagtgcactttaacct 51347267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 214 - 291
Target Start/End: Original strand, 12703524 - 12703602
Alignment:
Q  214 caaaattgtaatttttgtacatagaaggccaaaattgcaactttttaaaagttag-gggaaaaagtgcactttaacctt 291  Q
    |||||||||| ||||||||| |||  |||||||||| ||| ||||| |||||||| |||||||||||||||||| ||||    
T  12703524 caaaattgtagtttttgtacttagggggccaaaattacaaatttttgaaagttagagggaaaaagtgcactttagcctt 12703602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 127 - 286
Target Start/End: Original strand, 19986007 - 19986170
Alignment:
Q  127 ttacacacatggcatgccacacatgcgttgactttgtcaaaattgactaaaaagatcaaagatgcagagaggctaaatctta-aaggtcaaaattgtaat 225  Q
    |||||||| |||||||||||  | || ||||||  ||||||||||||  ||| || |||||||||| || || ||||||||| | ||||||||||||| |    
T  19986007 ttacacacgtggcatgccacgtaggcattgactg-gtcaaaattgaccgaaatgaccaaagatgcaaaggggttaaatcttagagggtcaaaattgtagt 19986105  T
Q  226 ttttgtacatagaa--ggccaaaattgcaactttttaaaagtta--ggggaaaaagtgcacttta 286  Q
    |||| ||||||| |  |||||||||||||| ||||| ||| |||   ||| ||||||||||||||    
T  19986106 ttttatacataggaggggccaaaattgcaagtttttgaaacttaagaggggaaaagtgcacttta 19986170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 214 - 291
Target Start/End: Complemental strand, 52104554 - 52104479
Alignment:
Q  214 caaaattgtaatttttgtacatagaaggccaaaattgcaactttttaaaagttaggggaaaaagtgcactttaacctt 291  Q
    ||||||| || ||||||||||||| |  |||||||| ||||||||| ||||||||||| ||||||||| |||||||||    
T  52104554 caaaattatagtttttgtacatagga--ccaaaattacaactttttgaaagttagggggaaaagtgcattttaacctt 52104479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 214 - 290
Target Start/End: Original strand, 7268851 - 7268928
Alignment:
Q  214 caaaattgtaatttttgtacatagaaggccaaaattgcaactttttaaaagtta-ggggaaaaagtgcactttaacct 290  Q
    |||||||||| ||| | ||| ||| ||||||||||||||| ||||| ||||||| |||| ||||||||||||||||||    
T  7268851 caaaattgtagtttctatacttaggaggccaaaattgcaagtttttgaaagttaggggggaaaagtgcactttaacct 7268928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 122 - 286
Target Start/End: Original strand, 40426709 - 40426877
Alignment:
Q  122 attatttacacacatggcatgccacacatgcgttgactttgtcaaaattgactaaaaagatcaaagatgcagagaggctaaatcttaaaggtc-aaaatt 220  Q
    ||||||| ||||  || ||||||||| |||||||||||| ||||||||| || |||| || ||||||  || ||  |||||||| ||  || | ||||||    
T  40426709 attatttgcacatgtgacatgccacatatgcgttgacttggtcaaaattaaccaaaaggaccaaagacacaaaggagctaaatcatagggggccaaaatt 40426808  T
Q  221 gtaatttttgtacatagaaggcc-aaaattgcaactttttaaaagtta--ggggaaaaagtgcacttta 286  Q
    |||||||||||| |||   |||| ||| |||||||||||| |||||||  |||| ||||||||||||||    
T  40426809 gtaatttttgtatataaggggccgaaatttgcaacttttttaaagttaaggggggaaaagtgcacttta 40426877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 122 - 286
Target Start/End: Complemental strand, 29931396 - 29931229
Alignment:
Q  122 attatttacacacatggcatgccacacatgcgttgactttgtcaaaattgactaaaaagatcaaagatgcagagaggctaaatctta-aaggtcaaaatt 220  Q
    ||||||||||||| ||| |||||| ||| ||||||||| ||||||||||||| |||| ||  |    |||| || || |||||||||   || |||||||    
T  29931396 attatttacacacgtggaatgccatacaggcgttgactgtgtcaaaattgaccaaaaggactattattgcaaaggggttaaatcttagggggccaaaatt 29931297  T
Q  221 gtaatttttgtacatagaaggccaaaattgcaactttttaaaagttaggg--gaaaaagtgcacttta 286  Q
    ||| ||||||||  |||  ||| |||||||||| ||||| ||||||||||  | ||||||||||||||    
T  29931296 gtagtttttgtatttagggggcaaaaattgcaagtttttgaaagttaggggtggaaaagtgcacttta 29931229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 199 - 291
Target Start/End: Original strand, 29932707 - 29932801
Alignment:
Q  199 ctaaatcttaaagg-tcaaaattgtaatttttgtacatagaaggccaaaattgcaactttttaaaagtt--aggggaaaaagtgcactttaacctt 291  Q
    ||||||||||| || ||||||||||| ||||||||| |||  |||||||||||||| ||||| ||||||  ||||| |||||||||||||| ||||    
T  29932707 ctaaatcttaaggggtcaaaattgtagtttttgtacttagg-ggccaaaattgcaagtttttgaaagttagagggggaaaagtgcactttagcctt 29932801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 122 - 286
Target Start/End: Complemental strand, 29980550 - 29980383
Alignment:
Q  122 attatttacacacatggcatgccacacatgcgttgactttgtcaaaattgactaaaaagatcaaagatgcagagaggctaaatctta-aaggtcaaaatt 220  Q
    ||||||||||||| ||| |||||| ||| ||||||||| ||||||||||||| |||| ||  |    |||| || || |||||||||   || |||||||    
T  29980550 attatttacacacgtggaatgccatacaggcgttgactgtgtcaaaattgaccaaaaggactattattgcaaaggggttaaatcttagggggccaaaatt 29980451  T
Q  221 gtaatttttgtacatagaaggccaaaattgcaactttttaaaagttaggg--gaaaaagtgcacttta 286  Q
    ||| ||||||||  |||  ||| |||||||||| ||||| ||||||||||  | ||||||||||||||    
T  29980450 gtagtttttgtatttagggggcaaaaattgcaagtttttgaaagttaggggtggaaaagtgcacttta 29980383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 199 - 291
Target Start/End: Original strand, 29981861 - 29981955
Alignment:
Q  199 ctaaatcttaaagg-tcaaaattgtaatttttgtacatagaaggccaaaattgcaactttttaaaagtt--aggggaaaaagtgcactttaacctt 291  Q
    ||||||||||| || ||||||||||| ||||||||| |||  |||||||||||||| ||||| ||||||  ||||| |||||||||||||| ||||    
T  29981861 ctaaatcttaaggggtcaaaattgtagtttttgtacttagg-ggccaaaattgcaagtttttgaaagttagagggggaaaagtgcactttagcctt 29981955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 141 - 229
Target Start/End: Original strand, 46492967 - 46493055
Alignment:
Q  141 tgccacacatgcgttgactttgtcaaaattgactaaaaagatcaaagatgcagagaggctaaatcttaaaggtcaaaattgtaattttt 229  Q
    |||||| ||||||||||||  |||||||||||| |||| |||||||| ||||| | ||||||| ||||  ||| |||||||| ||||||    
T  46492967 tgccacgcatgcgttgactaggtcaaaattgaccaaaaggatcaaagttgcaggggggctaaaacttaggggttaaaattgtcattttt 46493055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 162 - 269
Target Start/End: Complemental strand, 49216377 - 49216269
Alignment:
Q  162 gtcaaaattgactaaaaagatcaaagatgcagagaggctaaatcttaaaggt-caaaattgtaatttttgtacatagaaggccaaaattgcaacttttta 260  Q
    |||||||||| | |||| ||||||||||||| |   |||||||||||| ||  || ||||||| |||||||||||||  || |||||||||||||||||     
T  49216377 gtcaaaattggccaaaatgatcaaagatgcaaatgagctaaatcttaaggggacataattgtagtttttgtacatagggggtcaaaattgcaactttttg 49216278  T
Q  261 aaagttagg 269  Q
    ||| |||||    
T  49216277 aaacttagg 49216269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 214 - 288
Target Start/End: Original strand, 34940211 - 34940286
Alignment:
Q  214 caaaattgtaatttttgtacatagaaggccaaaattgcaactttttaaaagttag-gggaaaaagtgcactttaac 288  Q
    |||||||||||||||| ||||||  ||   |||||||||| ||||||||| |||| ||||||||||||||||||||    
T  34940211 caaaattgtaatttttatacataagagattaaaattgcaagtttttaaaaattagagggaaaaagtgcactttaac 34940286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 214 - 286
Target Start/End: Original strand, 51038814 - 51038888
Alignment:
Q  214 caaaattgtaatttttgtacatagaaggccaaaattgcaactttttaaaagtta--ggggaaaaagtgcacttta 286  Q
    |||||||||| ||||||| |||||  || |||||||||||||||||||||||||  || | ||||||||||||||    
T  51038814 caaaattgtagtttttgttcatagggggtcaaaattgcaactttttaaaagttaagggtggaaaagtgcacttta 51038888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 214 - 267
Target Start/End: Original strand, 55192019 - 55192072
Alignment:
Q  214 caaaattgtaatttttgtacatagaaggccaaaattgcaactttttaaaagtta 267  Q
    |||||||||| ||||||||| |||| |||||||||||||| ||||| |||||||    
T  55192019 caaaattgtagtttttgtacttagagggccaaaattgcaagtttttgaaagtta 55192072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 215 - 259
Target Start/End: Original strand, 54654331 - 54654375
Alignment:
Q  215 aaaattgtaatttttgtacatagaaggccaaaattgcaacttttt 259  Q
    |||||||||||||||||||||||||| ||||||||  ||||||||    
T  54654331 aaaattgtaatttttgtacatagaagaccaaaattataacttttt 54654375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 198 - 285
Target Start/End: Complemental strand, 24516554 - 24516464
Alignment:
Q  198 gctaaatcttaaaggtc-aaaattgtaatttttgtacatagaaggccaaaattgcaactttttaaaagtta--ggggaaaaagtgcacttt 285  Q
    |||||||||||| || | ||||||||| ||||| ||| |||   ||||||||||||| ||||| |||||||  ||||||||||||||||||    
T  24516554 gctaaatcttaaggggccaaaattgtagtttttatacttagggtgccaaaattgcaagttttttaaagttaggggggaaaaagtgcacttt 24516464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 243 - 286
Target Start/End: Original strand, 53901441 - 53901484
Alignment:
Q  243 caaaattgcaactttttaaaagttaggggaaaaagtgcacttta 286  Q
    ||||||||||||||||| ||| ||||||| ||||||||||||||    
T  53901441 caaaattgcaacttttttaaacttagggggaaaagtgcacttta 53901484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 162 - 259
Target Start/End: Complemental strand, 8876036 - 8875938
Alignment:
Q  162 gtcaaaattgactaaaaagatcaaagatgcagagaggctaaatctta-aaggtcaaaattgtaatttttgtacatagaaggccaaaattgcaacttttt 259  Q
    ||||||||||||||||| || |||| ||||| |  ||||||||||||   || |||||||||| ||||||||||||   ||| ||||||||| ||||||    
T  8876036 gtcaaaattgactaaaaggaccaaatatgcaaattggctaaatcttagggggccaaaattgtagtttttgtacataaggggctaaaattgcagcttttt 8875938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 290
Target Start/End: Original strand, 39844251 - 39844299
Alignment:
Q  244 aaaattgcaactttttaaaagtta--ggggaaaaagtgcactttaacct 290  Q
    |||||||||||||||||||| |||  |||||||| ||||||||||||||    
T  39844251 aaaattgcaactttttaaaacttaagggggaaaaggtgcactttaacct 39844299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 290
Target Start/End: Original strand, 47610630 - 47610682
Alignment:
Q  240 ggccaaaattgcaactttttaaaagtt--aggggaaaaagtgcactttaacct 290  Q
    |||||||||||||| ||||| ||||||  ||||| ||||||||||||||||||    
T  47610630 ggccaaaattgcaagtttttgaaagttagagggggaaaagtgcactttaacct 47610682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 119 - 208
Target Start/End: Original strand, 47615505 - 47615594
Alignment:
Q  119 ttaattatttacacacatggcatgccacacatgcgttgactttgtcaaaattgactaaaaagatcaaagatgcagagaggctaaatctta 208  Q
    ||||||| |||||||| |||| ||||||  | || |||| |  |||||||||||| |||| || |||||||||| || ||||||||||||    
T  47615505 ttaattaattacacacgtggcctgccacgtaggcattgaataagtcaaaattgaccaaaaggaccaaagatgcaaaggggctaaatctta 47615594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 122 - 291
Target Start/End: Complemental strand, 54539924 - 54539753
Alignment:
Q  122 attatttacacacatggcatgccacacatgcgttgactttgtcaaaattgactaaaaagatcaaagatgcagagaggctaaatcttaaagg-tcaaaatt 220  Q
    |||| |||||||| |||||||||||  |||| |||||   |||||||||| | |||| |||||||| |||| |   |||||||||||  || ||||||||    
T  54539924 attaattacacacgtggcatgccacgtatgctttgac-cagtcaaaattggcaaaaaggatcaaagttgcaaatgagctaaatcttaggggatcaaaatt 54539826  T
Q  221 gtaatttttgtacatagaaggccaaaattgcaactttttaaaagtta--ggggaaaaagtgcactttaacctt 291  Q
    ||| ||||||||  |||  ||  |||||||||| ||||| |||||||  || | |||||||||||||| ||||    
T  54539825 gtagtttttgtatttagggggttaaaattgcaagtttttgaaagttaagggtggaaaagtgcactttagcctt 54539753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 244 - 289
Target Start/End: Complemental strand, 39843098 - 39843051
Alignment:
Q  244 aaaattgcaactttttaaaagtta--ggggaaaaagtgcactttaacc 289  Q
    |||||||||||||||| ||| |||  ||||||||||||||||||||||    
T  39843098 aaaattgcaactttttcaaacttaagggggaaaaagtgcactttaacc 39843051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 61; Significance: 4e-26; HSPs: 30)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 122 - 286
Target Start/End: Original strand, 26545452 - 26545619
Alignment:
Q  122 attatttacacacatggcatgccacacatgcgttgactttgtcaaaattgactaaaaagatcaaagatgcagagaggctaaatctta-aaggtcaaaatt 220  Q
    ||||||||||||| |||||||||||| ||||||||| || |||||||||||  |||| || |||||||||| || |||||||||||| | ||||||||||    
T  26545452 attatttacacacgtggcatgccacatatgcgttgatttggtcaaaattgatcaaaatgaccaaagatgcaaaggggctaaatcttagagggtcaaaatt 26545551  T
Q  221 gtaatttttgtacatagaaggccaaaattgcaactttttaaaagttagg--ggaaaaagtgcacttta 286  Q
     |||||||||||  ||   || ||||||||||| ||||| ||||| | |  |||||||||||||||||    
T  26545552 ataatttttgtatttaaggggtcaaaattgcaaatttttgaaagtcatgaaggaaaaagtgcacttta 26545619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 119 - 286
Target Start/End: Complemental strand, 13030462 - 13030295
Alignment:
Q  119 ttaattatttacacacatggcatgccacacatgcgttgactttgtcaaaattgactaaaaagatcaaagatgcagagaggctaaatcttaaaggtcaaaa 218  Q
    ||||||| |||||||  |||| ||||||  | ||||||| |  |||||||||||| |||| || |||||||||| |   |||||||||||  || |||||    
T  13030462 ttaattaattacacatgtggcctgccacgtaggcgttgaataagtcaaaattgaccaaaatgaccaaagatgcaaaagagctaaatcttagggggcaaaa 13030363  T
Q  219 -ttgtaatttttgtacatagaaggccaaaattgcaactttttaaaagttaggggaaaaagtgcacttta 286  Q
     ||||||||||||||| |||  |||||||||| ||| ||||| ||||||||||| ||||||||||||||    
T  13030362 attgtaatttttgtacttagg-ggccaaaattacaagtttttgaaagttagggggaaaagtgcacttta 13030295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 122 - 291
Target Start/End: Complemental strand, 11257791 - 11257620
Alignment:
Q  122 attatttacacacatggcatgccacacatgcgttgactttgtcaaaattgactaaaaagatcaaagatgcagagaggctaaatctta-aaggtcaaaatt 220  Q
    ||||||||||||| ||||||||||| || ||||||||| ||||||||||||  |||| |||||||  ||||  | ||||||||||||  ||| |||||||    
T  11257791 attatttacacacgtggcatgccacgcaggcgttgactatgtcaaaattgatcaaaaggatcaaatttgcaatggggctaaatcttaggaggccaaaatt 11257692  T
Q  221 gtaatttttgtacatagaaggccaaaattgcaactttttaaaagttagggga--aaaagtgcactttaacctt 291  Q
    ||| ||||| ||| |||  |   |||||||||| ||||| |||||||| |||  |||||||||||||| ||||    
T  11257691 gtagtttttatacttag-ggtttaaaattgcaagtttttgaaagttagaggagtaaaagtgcactttagcctt 11257620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 128 - 291
Target Start/End: Original strand, 22587892 - 22588056
Alignment:
Q  128 tacacacatggcatgccacacatgcgttgactttgtcaaaattgactaaaaagatcaaagatgcagagaggctaaatcttaa-aggtcaaaattgtaatt 226  Q
    ||||||| |||||||||||| |  ||||||||  ||| |||||| | |||| || |||||||||| || |||||||||||||  || |||||||||| ||    
T  22587892 tacacacgtggcatgccacatagacgttgactg-gtcgaaattggccaaaaggaccaaagatgcaaaggggctaaatcttaaggggccaaaattgtagtt 22587990  T
Q  227 tttgtacatagaaggccaaaattgcaactttttaaaagtt---aggggaaaaagtgcactttaacctt 291  Q
    |||||||||||  |||||||||||||| ||||| ||||||   |||||||||| ||||||||| ||||    
T  22587991 tttgtacatag-gggccaaaattgcaagtttttgaaagttatgaggggaaaaa-tgcactttagcctt 22588056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 154 - 286
Target Start/End: Original strand, 18300688 - 18300820
Alignment:
Q  154 ttgactttgtcaaaattgactaaaaagatcaaagatgcagagaggctaaatcttaaaggtcaaaattgtaatttttgtacatagaaggccaaaattgcaa 253  Q
    |||||||  ||||||||| | |||| || |||||||||| || ||||||||  ||  ||||||||||||| ||||||||| |||  || |||||||||||    
T  18300688 ttgacttgatcaaaattgtccaaaaggaccaaagatgcaaaggggctaaattataggggtcaaaattgtagtttttgtacttagggggtcaaaattgcaa 18300787  T
Q  254 ctttttaaaagttaggggaaaaagtgcacttta 286  Q
     ||| | ||||||||||| ||||||||| ||||    
T  18300788 gtttatgaaagttagggggaaaagtgcaattta 18300820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 119 - 268
Target Start/End: Original strand, 18869090 - 18869242
Alignment:
Q  119 ttaattatttacacacatggcatgccacacatgcgttgactttgtcaaaattgactaaaaagatcaaagatgcagagagg-ctaaatcttaaagg-tcaa 216  Q
    ||||||| |||||||| |||| ||||||| | ||||||| |  |||||||||||  ||||||| |||||||||| |  || ||||||||||  || | ||    
T  18869090 ttaattaattacacacgtggcctgccacataggcgttgaataagtcaaaattgatcaaaaagaccaaagatgcaaaatgggctaaatcttaggggataaa 18869189  T
Q  217 aattgtaatttttgtacatagaaggccaaaattg-caactttttaaaagttag 268  Q
    ||||||| ||||||||| |||||||||||||||| ||| ||||| ||||||||    
T  18869190 aattgtagtttttgtacttagaaggccaaaattgccaaatttttgaaagttag 18869242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 122 - 286
Target Start/End: Complemental strand, 26544318 - 26544152
Alignment:
Q  122 attatttacacacatggcatgccacacatgcgttgactttgtcaaaattgactaaaaagatcaaagatgcagagaggctaaatctta-aaggtcaaaatt 220  Q
    |||||||||||||  ||||||||||| |||||||||||| |||||||||||  |||| || |||| ||||| ||  |||||||||||  |||  |||| |    
T  26544318 attatttacacacgcggcatgccacatatgcgttgacttggtcaaaattgatcaaaaggaccaaatatgcaaaggtgctaaatcttaggaggctaaaact 26544219  T
Q  221 gtaatttttgtacatagaaggccaaaattgcaactttttaaaagttagggg--aaaaagtgcacttta 286  Q
    ||| ||||||||| ||| |  ||||||||| || ||||||||| |||||||   ||||||||||||||    
T  26544218 gtagtttttgtacttagga-accaaaattgtaaatttttaaaaattaggggtagaaaagtgcacttta 26544152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 122 - 268
Target Start/End: Original strand, 11258742 - 11258889
Alignment:
Q  122 attatttacacacatggcatgccacacatgcgttgactttgtcaaaattgactaaaaagatcaaagatgcagagaggctaaatcttaaaggtc-aaaatt 220  Q
    ||||||| ||| | ||||||||||  || |||||||||  |||||||||||| |||| |||||||  ||||  | ||||||||||||  || | ||||||    
T  11258742 attatttgcacgcgtggcatgccatgcaagcgttgactaggtcaaaattgaccaaaaggatcaaatctgcaatggggctaaatcttaggggactaaaatt 11258841  T
Q  221 gtaatttttgtacatagaaggccaaaattgcaactttttaaaagttag 268  Q
    ||| ||||||||| |||  |||||||||||||| ||||| ||||||||    
T  11258842 gtagtttttgtacttagggggccaaaattgcaagtttttgaaagttag 11258889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 119 - 286
Target Start/End: Original strand, 18905916 - 18906085
Alignment:
Q  119 ttaattatttacacacatggcatgccacacatgcgttgactttgtcaaaattgactaaaaagatcaaagatgcagagaggctaaatcttaaaggtcaaaa 218  Q
    ||||||| |||||||| |||  ||||||  | ||||||| |  |||||||||||  ||||||| |||||||||| |   |||||||||||  ||  ||||    
T  18905916 ttaattaattacacacgtggtctgccacgtaggcgttgaataagtcaaaattgatcaaaaagaccaaagatgcaaatgagctaaatcttaggggctaaaa 18906015  T
Q  219 ttgtaatttttgtacatagaaggccaaaattgcaactttttaaaagttag--gggaaaaagtgcacttta 286  Q
    ||||| ||||||||| |||  ||| |||||||||| ||||| ||||||||  ||| ||||||||||||||    
T  18906016 ttgtagtttttgtacttagggggctaaaattgcaagtttttgaaagttagaaggggaaaagtgcacttta 18906085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 119 - 291
Target Start/End: Complemental strand, 22848364 - 22848189
Alignment:
Q  119 ttaattatttacacacatggcatgccacacatgcgttgactttgtcaaaattgactaaaaagatcaaagatgcagagaggctaaatcttaaag-gtcaaa 217  Q
    ||||||| |||||||| |||| ||||||  | ||||||| |  |||||||||||  |||| || ||||| |||| || ||||||||||||  | | ||||    
T  22848364 ttaattaattacacacgtggcttgccacgtaggcgttgaataagtcaaaattgatcaaaaggaccaaagctgcaaaggggctaaatcttagggagccaaa 22848265  T
Q  218 attgtaatttttgtacatagaaggccaaaattgcaactttttaaaagtta--ggggaaaaagtgcactttaacctt 291  Q
    |||||| ||||||||  |||  | |||||||||||| ||||| |||||||  |||| |||||||||||||| ||||    
T  22848264 attgtagtttttgtatttaggggaccaaaattgcaagtttttgaaagttaggggggtaaaagtgcactttagcctt 22848189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 211 - 283
Target Start/End: Original strand, 24476865 - 24476937
Alignment:
Q  211 ggtcaaaattgtaatttttgtacatagaaggccaaaattgcaactttttaaaagttaggggaaaaagtgcact 283  Q
    ||||||||||||| ||||||||| |||  | |||||||| ||| |||||||||||| ||||||||||||||||    
T  24476865 ggtcaaaattgtagtttttgtacttaggggaccaaaattacaagtttttaaaagttgggggaaaaagtgcact 24476937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 240 - 291
Target Start/End: Original strand, 21837305 - 21837356
Alignment:
Q  240 ggccaaaattgcaactttttaaaagttaggggaaaaagtgcactttaacctt 291  Q
    |||||||||||||| ||||| |||||||||||||||||||||||||| ||||    
T  21837305 ggccaaaattgcaagtttttgaaagttaggggaaaaagtgcactttagcctt 21837356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 214 - 276
Target Start/End: Complemental strand, 32739700 - 32739638
Alignment:
Q  214 caaaattgtaatttttgtacatagaaggccaaaattgcaactttttaaaagttaggggaaaaa 276  Q
    |||||||||| ||||||||||||   |||||||||||||| ||||| ||||||||||||||||    
T  32739700 caaaattgtagtttttgtacataaggggccaaaattgcaagtttttgaaagttaggggaaaaa 32739638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 151 - 259
Target Start/End: Complemental strand, 11996848 - 11996739
Alignment:
Q  151 gcgttgactttgtcaaaattgactaaaaagatcaaagatgcagagaggctaaatcttaaaggtc-aaaattgtaatttttgtacatagaaggccaaaatt 249  Q
    |||||||||| |||||||||||| |||| || |||||||| | || || ||||||||| ||  | ||||||||| |||||||||||||  || ||||||     
T  11996848 gcgttgacttggtcaaaattgaccaaaaggaccaaagatgtaaaggggttaaatcttagagaactaaaattgtagtttttgtacatagggggtcaaaatc 11996749  T
Q  250 gcaacttttt 259  Q
    ||||||||||    
T  11996748 gcaacttttt 11996739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 127 - 271
Target Start/End: Complemental strand, 18797412 - 18797267
Alignment:
Q  127 ttacacacatggcatgccacacatgcgttgactttgtcaaaattgactaaaaagatcaaagatgcagagaggctaaatcttaaagg-tcaaaattgtaat 225  Q
    |||||||| |||||||||| | | ||||||||   |||||||||| |||||| || |||||||||| || |||||||| |||  || ||||||||||| |    
T  18797412 ttacacacgtggcatgccaaataagcgttgaccaagtcaaaattggctaaaaggaccaaagatgcaaaggggctaaattttagggggtcaaaattgtagt 18797313  T
Q  226 ttttgtacatagaaggccaaaattgcaactttttaaaagttagggg 271  Q
    |||  ||| ||   || ||||||||||| ||||| |||||||||||    
T  18797312 tttaatacttaaggggtcaaaattgcaagtttttgaaagttagggg 18797267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 162 - 270
Target Start/End: Complemental strand, 22587630 - 22587522
Alignment:
Q  162 gtcaaaattgactaaaaagatcaaagatgcagagaggctaaatctta-aaggtcaaaattgtaatttttgtacatagaaggccaaaattgcaacttttta 260  Q
    |||||||||| | |||| || |||||||||| |||||||||||||||   || |||||||||| |||||||| ||||  | ||||||||| ||||||||     
T  22587630 gtcaaaattggccaaaaggaccaaagatgcaaagaggctaaatcttagggggccaaaattgtagtttttgta-ataggggaccaaaattggaactttttg 22587532  T
Q  261 aaagttaggg 270  Q
    ||||||||||    
T  22587531 aaagttaggg 22587522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 154 - 286
Target Start/End: Complemental strand, 18299511 - 18299376
Alignment:
Q  154 ttgactttgtcaaaattgactaaaaagatcaaagatgcagagaggctaaatctta-aaggtcaaaattgtaatttttgtacatagaaggccaaaattgca 252  Q
    ||||||| |||||||||||| |||| ||||||||||||| |  ||||||||| ||   || |||||||||| ||||| ||| |||  ||||||||||| |    
T  18299511 ttgacttggtcaaaattgaccaaaaggatcaaagatgcaaaagggctaaatcatagggggccaaaattgtagtttttatacttaggtggccaaaattgaa 18299412  T
Q  253 actttttaaaagtta--ggggaaaaagtgcacttta 286  Q
    | ||||| |||||||  || | ||||||||||||||    
T  18299411 agtttttgaaagttacgggtggaaaagtgcacttta 18299376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 119 - 286
Target Start/End: Complemental strand, 28618094 - 28617926
Alignment:
Q  119 ttaattatttacacacatggcatgccacacatgcgttgactttgtcaaaattgactaaaaagatcaaagatgcagagaggctaaatcttaaaggtcaaaa 218  Q
    ||||||| |||||||| |||  ||||||  | || |||| || |||||||| ||| ||||  | |||||||||| || ||||||||||||  || |||||    
T  28618094 ttaattaattacacacgtggtctgccacgtaggcattgaattagtcaaaatagaccaaaataaccaaagatgcaaaggggctaaatcttagggggcaaaa 28617995  T
Q  219 ttgtaatttttgtacatagaaggccaaaattgcaactttttaaaagttaggg-gaaaaagtgcacttta 286  Q
    ||| | ||||||||| | |  ||||||||||||||  |||| |||||||||| |||||| || ||||||    
T  28617994 ttgaagtttttgtacttggggggccaaaattgcaagattttgaaagttagggagaaaaaatgtacttta 28617926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 214 - 286
Target Start/End: Complemental strand, 36449855 - 36449781
Alignment:
Q  214 caaaattgtaatttttgtacatagaaggccaaaattgcaactttttaaaagtta--ggggaaaaagtgcacttta 286  Q
    |||||||||| ||||||||| |||  |||||||||||||| ||||| |||||||  |||| ||||||||||||||    
T  36449855 caaaattgtagtttttgtacttagggggccaaaattgcaagtttttgaaagttaaggggggaaaagtgcacttta 36449781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 163 - 291
Target Start/End: Original strand, 802563 - 802693
Alignment:
Q  163 tcaaaattgactaaaaagatcaaagatgcagagaggctaaatcttaaagg-tcaaaattgtaatttttgtacatagaaggccaaaattgcaactttttaa 261  Q
    |||||||||||  ||| || |||| ||||| || ||  |||||||| ||| ||||||||||| |||||||||| ||  |||||||||||||| ||||| |    
T  802563 tcaaaattgacctaaaggaccaaatatgcaaaggggtaaaatcttagagggtcaaaattgtagtttttgtacacagggggccaaaattgcaagtttttga 802662  T
Q  262 aagtta-ggggaaaaagtgcactttaacctt 291  Q
    || ||| |||| |||||| ||||||| ||||    
T  802663 aacttaggggggaaaagtacactttagcctt 802693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 213 - 271
Target Start/End: Complemental strand, 18869002 - 18868944
Alignment:
Q  213 tcaaaattgtaatttttgtacatagaaggccaaaattgcaactttttaaaagttagggg 271  Q
    ||||||||||| ||||||||  ||| ||||||||||||||| ||||| |||||||||||    
T  18869002 tcaaaattgtagtttttgtatttaggaggccaaaattgcaagtttttgaaagttagggg 18868944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 240 - 286
Target Start/End: Complemental strand, 21837119 - 21837073
Alignment:
Q  240 ggccaaaattgcaactttttaaaagttaggggaaaaagtgcacttta 286  Q
    |||||||||||||| ||||| |||||||| |||||||||||||||||    
T  21837119 ggccaaaattgcaagtttttgaaagttagaggaaaaagtgcacttta 21837073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 243 - 300
Target Start/End: Original strand, 8535709 - 8535766
Alignment:
Q  243 caaaattgcaactttttaaaagttaggggaaaaagtgcactttaaccttcaaagtact 300  Q
    ||||||| ||| ||||||||||||||| | ||||||| ||||||||||||||| ||||    
T  8535709 caaaattacaagtttttaaaagttaggaggaaaagtgtactttaaccttcaaattact 8535766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 162 - 286
Target Start/End: Original strand, 7899853 - 7899980
Alignment:
Q  162 gtcaaaattgactaaaaagatcaaagatgcagagaggctaaatcttaaaggtc-aaaattgtaatttttgtacatagaaggccaaaattgcaacttttta 260  Q
    |||||||||||| |||||||| |||| | ||  | ||||||||||||  || | ||||||||| ||| ||||| |||  | |||||||||||| |||||     
T  7899853 gtcaaaattgaccaaaaagattaaagttacaatggggctaaatcttagggggctaaaattgtagtttctgtacttaggggaccaaaattgcaagtttttg 7899952  T
Q  261 aaagtta--ggggaaaaagtgcacttta 286  Q
    |||||||  |||| ||||||||||||||    
T  7899953 aaagttaaggggggaaaagtgcacttta 7899980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 216 - 290
Target Start/End: Original strand, 36450947 - 36451022
Alignment:
Q  216 aaattgtaatttttgtacatagaaggccaaaattgcaactttttaaaagtt-aggggaaaaagtgcactttaacct 290  Q
    |||||||| ||| ||||| |||  | |||||||||||| ||||| |||||| ||||| ||||||||||||||||||    
T  36450947 aaattgtagtttctgtacttaggggaccaaaattgcaagtttttgaaagttaagggggaaaagtgcactttaacct 36451022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 127 - 290
Target Start/End: Complemental strand, 7898855 - 7898690
Alignment:
Q  127 ttacacacatggcatgccacacatgcgttgactttgtcaaaattgactaaaaagatcaaagatgcagagaggctaaatctta-aaggtcaaaattgtaat 225  Q
    |||||||| |||||||||||  | || ||||| | |||||||||||  |||| ||| |||  ||||  | ||||||||||||   || |||||||||| |    
T  7898855 ttacacacgtggcatgccacgtaagcattgac-tggtcaaaattgatcaaaaggattaaaattgcaatggggctaaatcttagggggccaaaattgtagt 7898757  T
Q  226 ttttgtacatagaaggccaaaattgcaactttttaaaagtt-agggga-aaaagtgcactttaacct 290  Q
    || | ||| ||| |||| |||||||||| ||||| |||||| |||||| ||||||||||||||||||    
T  7898756 ttctatacttaggaggcaaaaattgcaagtttttgaaagttaaggggagaaaagtgcactttaacct 7898690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 213 - 292
Target Start/End: Complemental strand, 13568050 - 13567969
Alignment:
Q  213 tcaaaattgtaatttttgtacatagaaggccaaaattgcaactttttaaaagttag--gggaaaaagtgcactttaaccttc 292  Q
    ||||||||||| ||||||||  |||  |||||||||||||| ||||| ||| ||||  ||| |||||| |||||||||||||    
T  13568050 tcaaaattgtagtttttgtatttagggggccaaaattgcaagtttttgaaacttagaaggggaaaagtacactttaaccttc 13567969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 224 - 286
Target Start/End: Original strand, 11938822 - 11938886
Alignment:
Q  224 atttttgtacatagaaggccaaaattgcaactttttaaaagttaggg--gaaaaagtgcacttta 286  Q
    |||||||||| ||| || |||||||||||| ||||| ||||||||||  | ||||||||||||||    
T  11938822 atttttgtacttaggagaccaaaattgcaagtttttgaaagttaggggtggaaaagtgcacttta 11938886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 211 - 259
Target Start/End: Original strand, 810802 - 810850
Alignment:
Q  211 ggtcaaaattgtaatttttgtacatagaaggccaaaattgcaacttttt 259  Q
    ||||||||||||| |||||||||| ||  |||||||||||||| |||||    
T  810802 ggtcaaaattgtagtttttgtacacagggggccaaaattgcaagttttt 810850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 162 - 253
Target Start/End: Complemental strand, 41878224 - 41878132
Alignment:
Q  162 gtcaaaattgactaaaaagatcaaagatgcagagaggctaaatcttaaaggtc-aaaattgtaatttttgtacatagaaggccaaaattgcaa 253  Q
    |||||||||||| |||||||| |||  ||||  | ||||||||||||| || | ||||||||| ||| ||||| |||  ||||||||||||||    
T  41878224 gtcaaaattgaccaaaaagattaaaattgcaatggggctaaatcttaaggggccaaaattgtagtttctgtacttagggggccaaaattgcaa 41878132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 59; Significance: 7e-25; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 122 - 271
Target Start/End: Complemental strand, 31659793 - 31659643
Alignment:
Q  122 attatttacacacatggcatgccacacatgcgttgactttgtcaaaattgactaaaaagatcaaagatgcagagaggctaaatctta-aaggtcaaaatt 220  Q
    ||||||||||||| ||||||||||| |||||||||||| ||||||||||||| |||| |||||||  ||||  | ||||||||||||   || |||||||    
T  31659793 attatttacacacgtggcatgccacgcatgcgttgactatgtcaaaattgaccaaaaggatcaaatttgcaatggggctaaatcttagggggccaaaatt 31659694  T
Q  221 gtaatttttgtacatagaaggccaaaattgcaactttttaaaagttagggg 271  Q
    ||| ||||||||| |||  || |||||||| || ||||| |||||||||||    
T  31659693 gtagtttttgtacttagggggtcaaaattgtaagtttttgaaagttagggg 31659643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 164 - 286
Target Start/End: Complemental strand, 21505542 - 21505419
Alignment:
Q  164 caaaattgactaaaaagatcaaagatgcagagaggctaaatcttaaagg-tcaaaattgtaatttttgtacatagaaggccaaaattgcaactttttaaa 262  Q
    |||||||| | |||| || |||||||||| || ||||||||||||  || ||||||||||| |||||||| || |  ||||||||| |||||||||| ||    
T  21505542 caaaattgtccaaaaggaccaaagatgcaaaggggctaaatcttatggggtcaaaattgtagtttttgtatatcgggggccaaaatcgcaactttttgaa 21505443  T
Q  263 agttaggggaaaaagtgcacttta 286  Q
    ||||||||| ||||||||||||||    
T  21505442 agttagggggaaaagtgcacttta 21505419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 119 - 291
Target Start/End: Complemental strand, 7500627 - 7500453
Alignment:
Q  119 ttaattatttacacacatggcatgccacacatgcgttgactttgtcaaaattgactaaaaagatcaaagatgcagagaggctaaatctta-aaggtcaaa 217  Q
    ||||||| ||||||||||||| ||||||  | ||||||| |  |||||||||||| |||| ||||||||||||| || ||||||||||||   || ||||    
T  7500627 ttaattaattacacacatggcctgccacgtaggcgttgaataagtcaaaattgaccaaaaggatcaaagatgcaaaggggctaaatcttagggggccaaa 7500528  T
Q  218 attgtaatttttgtacatagaaggccaaaattgcaactttttaaaagtt-aggggaaaaagtgcactttaacctt 291  Q
    |||||  ||| | ||| |||| |  ||||||||||| ||||| |||||| ||||| |||||||||||||| ||||    
T  7500527 attgtggtttctatacttagaggatcaaaattgcaagtttttgaaagttaagggggaaaagtgcactttagcctt 7500453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 119 - 276
Target Start/End: Complemental strand, 47369954 - 47369796
Alignment:
Q  119 ttaattatttacacacatggcatgccacacatgcgttgactttgtcaaaattgactaaaaagatcaaagatgcagagaggctaaatcttaaaggtc-aaa 217  Q
    ||||||| |||||||| |||| ||||||| | ||||||| |  |||||||||||| ||||  |  ||||||||| || ||||||||||||| || | |||    
T  47369954 ttaattaattacacacgtggcctgccacataggcgttgaataagtcaaaattgaccaaaataactaaagatgcaaaggggctaaatcttaaggggccaaa 47369855  T
Q  218 attgtaatttttgtacatagaaggccaaaattgcaactttttaaaagttaggggaaaaa 276  Q
    ||| || ||||||||| ||  |||| |||||||||| ||||| ||||||||||||||||    
T  47369854 attatagtttttgtacttatgaggctaaaattgcaagtttttgaaagttaggggaaaaa 47369796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 119 - 272
Target Start/End: Complemental strand, 22629659 - 22629505
Alignment:
Q  119 ttaattatttacacacatggcatgccacacatgcgttgactttgtcaaaattgactaaaaagatcaaagatgcagagaggctaaatctta-aaggtcaaa 217  Q
    ||||||| |||||||| ||||| |||||  | ||||||| |  |||||||||||| |||| || |||||||||| || ||||||||||||   || ||||    
T  22629659 ttaattaattacacacgtggcaggccacgtaggcgttgaataagtcaaaattgaccaaaaggaccaaagatgcaaaggggctaaatcttagggggccaaa 22629560  T
Q  218 attgtaatttttgtacatagaaggccaaaattgcaactttttaaaagttagggga 272  Q
    |||||| ||||||||| ||| ||||||||||| ||| ||||| ||| ||| ||||    
T  22629559 attgtagtttttgtacttaggaggccaaaattacaagtttttgaaaattaaggga 22629505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 119 - 271
Target Start/End: Original strand, 18372385 - 18372538
Alignment:
Q  119 ttaattatttacacacatggcatgccacacatgcgttgactttgtcaaaattgactaaaaagatcaaagatgcagagaggctaaatctta-aaggtcaaa 217  Q
    ||||||| |||||||| ||||| |||||| |  |||||| |  |||||||||||| |||| || ||||||| || || ||||||||||||   || ||||    
T  18372385 ttaattaattacacacgtggcaggccacatagacgttgaataagtcaaaattgaccaaaaggaccaaagatacaaaggggctaaatcttagggggccaaa 18372484  T
Q  218 attgtaatttttgtacatagaaggccaaaattgcaactttttaaaagttagggg 271  Q
    |||||| ||||||||| |||  |||||||||||||| ||||| ||| |||||||    
T  18372485 attgtagtttttgtacttagggggccaaaattgcaagtttttgaaaattagggg 18372538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 119 - 286
Target Start/End: Complemental strand, 18371597 - 18371427
Alignment:
Q  119 ttaattatttacacacatggcatgccacacatgcgttgactttgtcaaaattgactaaaaagatcaaagatgcagagaggctaaatcttaaaggtc-aaa 217  Q
    ||||||| ||| |||| |||| ||||||  | ||||||| |  |||||||||||| |||| ||||||||||||| |   |||||||||||  || | |||    
T  18371597 ttaattaattatacacgtggcctgccacgtaggcgttgaataagtcaaaattgaccaaaaggatcaaagatgcaaatgtgctaaatcttagggggccaaa 18371498  T
Q  218 attgtaatttttgtacatagaaggccaaaattgcaactttttaaaagttag--gggaaaaagtgcacttta 286  Q
    |||||| ||||||||| ||   |||||||||||||| ||||| ||||||||  ||| ||||||||||||||    
T  18371497 attgtagtttttgtacttaaggggccaaaattgcaagtttttgaaagttaggaggggaaaagtgcacttta 18371427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 162 - 290
Target Start/End: Original strand, 42886257 - 42886388
Alignment:
Q  162 gtcaaaattgactaaaaagatcaaagatgcagagaggctaaatcttaaaggtc-aaaattgtaatttttgtacatagaaggccaaaattgcaacttttta 260  Q
    |||||||||||| |||| ||||||||||||| |  ||||||||||||  || | ||||||||| ||||||||  |||  || ||||||||||| |||||     
T  42886257 gtcaaaattgaccaaaatgatcaaagatgcaaatgggctaaatcttagggggctaaaattgtagtttttgtatttagggggtcaaaattgcaaatttttg 42886356  T
Q  261 aaagttagg-gga-aaaagtgcactttaacct 290  Q
    ||||||||| ||| ||||||||||||||||||    
T  42886357 aaagttaggaggagaaaagtgcactttaacct 42886388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 127 - 290
Target Start/End: Complemental strand, 6618372 - 6618208
Alignment:
Q  127 ttacacacatggcatgccacacatgcgttgactttgtcaaaattgactaaaaagatcaaagatgcagagaggctaaatcttaaag-gtcaaaattgtaat 225  Q
    |||||||  |||||||||||| | |||||||||  |||||||||||  |||| |||||||  ||||  ||||| ||||||||  | ||||||||||||||    
T  6618372 ttacacatgtggcatgccacataggcgttgactaggtcaaaattgatcaaaatgatcaaatttgcaatgaggcaaaatcttagggagtcaaaattgtaat 6618273  T
Q  226 ttttgtacatagaaggccaaaattgcaactttttaaaagttaggggaaaaagtgcactttaacct 290  Q
    |||| ||  ||      ||||||||||| |||| ||||||||| ||||||||| |||||||||||    
T  6618272 ttttatatttaaggaatcaaaattgcaagttttgaaaagttagaggaaaaagtacactttaacct 6618208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 119 - 286
Target Start/End: Original strand, 7501780 - 7501950
Alignment:
Q  119 ttaattatttacacacatggcatgccacacatgcgttgactttgtcaaaattgactaaaaagatcaaagatgcagagaggctaaatcttaa-aggtcaaa 217  Q
    ||||||| |||||||| |||| ||||||  | || |||| |  |||||||||||| |||| || |||||||||| || ||||| |||||||  || ||||    
T  7501780 ttaattaattacacacgtggcctgccacgtaggcattgaataagtcaaaattgaccaaaaggaccaaagatgcaaaggggctacatcttaaggggccaaa 7501879  T
Q  218 attgtaatttttgtacatagaaggccaaaattgcaactttttaaaagtt--aggggaaaaagtgcacttta 286  Q
    |||||  ||||  ||| |||  |||||||||||||| ||||| ||||||  ||||| ||||||||||||||    
T  7501880 attgttgttttgatacttagggggccaaaattgcaagtttttgaaagttagagggggaaaagtgcacttta 7501950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 127 - 286
Target Start/End: Original strand, 22630388 - 22630550
Alignment:
Q  127 ttacacacatggcatgccacacatgcgttgactttgtcaaaattgactaaaaagatcaaagatgcagagaggctaaatcttaaaggtc-aaaattgtaat 225  Q
    |||||||| |||| | ||||| | ||||||| |  |||||||||||| |||| || ||||||| || ||||||| |||||||  || | ||||||||| |    
T  22630388 ttacacacgtggcctaccacataagcgttgaataagtcaaaattgaccaaaaggaccaaagatacaaagaggctgaatcttagggggctaaaattgtagt 22630487  T
Q  226 ttttgtacatagaaggccaaaattgcaactttttaaaagtta--ggggaaaaagtgcacttta 286  Q
    |||||||  |||  |||||||||||||| ||||| |||||||  | || ||||||||||||||    
T  22630488 ttttgtaattagggggccaaaattgcaagtttttgaaagttatggagggaaaagtgcacttta 22630550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 127 - 286
Target Start/End: Complemental strand, 43899610 - 43899451
Alignment:
Q  127 ttacacacatggcatgccacacatgcgttgactttgtcaaaattgactaaaaagatcaaagatgcagagaggctaaatcttaaag-gtcaaaattgtaat 225  Q
    |||||| | ||||||||||| || || ||||||  |||||||||| | |||||||||||||||| | |   ||||| | ||| || | ||||||||||||    
T  43899610 ttacacgcgtggcatgccactca-gctttgactaagtcaaaattggccaaaaagatcaaagatgtaaatgtgctaatttttagagagccaaaattgtaat 43899512  T
Q  226 ttttgtacatagaaggccaaaattgcaactttttaaaagttaggggaaaaagtgcacttta 286  Q
    |||| ||  ||||||  ||||||||||| ||||| ||||||| |||||||| || ||||||    
T  43899511 ttttatatttagaagatcaaaattgcaagtttttgaaagttaagggaaaaaatgtacttta 43899451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 214 - 291
Target Start/End: Original strand, 11662575 - 11662654
Alignment:
Q  214 caaaattgtaatttttgtacatagaaggccaaaattgcaactttttaaaagtta--ggggaaaaagtgcactttaacctt 291  Q
    ||||||| || ||||||||||||||  || |||||||||| ||||| |||||||  |||| |||| ||||||||||||||    
T  11662575 caaaattatagtttttgtacatagagagctaaaattgcaagtttttgaaagttaaggggggaaaaatgcactttaacctt 11662654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 151 - 286
Target Start/End: Original strand, 3227554 - 3227692
Alignment:
Q  151 gcgttgactttgtcaaaattgactaaaaagatcaaagatgcagagaggctaaatcttaaaggt-caaaattgtaatttttgtacatagaaggccaaaatt 249  Q
    |||||||||  |||||||||||  |||| || ||||| ||||  | ||||||||||||  ||| | |||||||  |||| |||| |||  ||||||||||    
T  3227554 gcgttgactaggtcaaaattgatcaaaaggaccaaagttgcaatggggctaaatcttaggggtgctaaattgtggttttggtacttagggggccaaaatt 3227653  T
Q  250 gcaactttttaaaagtta--ggggaaaaagtgcacttta 286  Q
    |||| ||||| |||||||  |||| ||||||||||||||    
T  3227654 gcaagtttttgaaagttagggggggaaaagtgcacttta 3227692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 162 - 284
Target Start/End: Original strand, 14999126 - 14999249
Alignment:
Q  162 gtcaaaattgactaaaaagatcaaagatgcagagaggctaaatcttaaag-gtcaaaattgtaatttttgtacatagaaggccaaaattgcaacttttta 260  Q
    ||||||||||||  ||| || |||||||||| || ||||||||||||  | | |||||||||| ||||||||  |||  || ||||||||||| |||| |    
T  14999126 gtcaaaattgacctaaaggaacaaagatgcaaaggggctaaatcttagggcgccaaaattgtagtttttgtatttagggggtcaaaattgcaagttttga 14999225  T
Q  261 aaagttaggggaaaaagtgcactt 284  Q
    ||| |  |||| ||||||||||||    
T  14999226 aaattaggggggaaaagtgcactt 14999249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 214 - 271
Target Start/End: Original strand, 5111637 - 5111694
Alignment:
Q  214 caaaattgtaatttttgtacatagaaggccaaaattgcaactttttaaaagttagggg 271  Q
    |||||||||||||||| |  ||||| ||| ||||| |||||||||||||| |||||||    
T  5111637 caaaattgtaattttttttaatagagggcaaaaatcgcaactttttaaaacttagggg 5111694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 219 - 271
Target Start/End: Original strand, 20163585 - 20163637
Alignment:
Q  219 ttgtaatttttgtacatagaaggccaaaattgcaactttttaaaagttagggg 271  Q
    ||||| |||||||||||||   ||||||||||||| ||||| |||||||||||    
T  20163585 ttgtagtttttgtacatagggagccaaaattgcaagtttttgaaagttagggg 20163637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 154 - 286
Target Start/End: Complemental strand, 60228 - 60093
Alignment:
Q  154 ttgactttgtcaaaattgactaaaaagatcaaagatgcagagaggctaaatcttaaagg-tcaaaattgtaatttttgtacatagaaggccaaaattgca 252  Q
    ||||||| |||||||||||| ||||||| |||||||||| || ||||||||| ||  || ||||||||||| ||||| |||||||  || ||||||||||    
T  60228 ttgacttggtcaaaattgaccaaaaagaccaaagatgcaaaggggctaaatcatagggggtcaaaattgtagtttttatacatagggggtcaaaattgca 60129  T
Q  253 actttttaaaagttagggga--aaaagtgcacttta 286  Q
    | |||||||||||||| |||  ||||||||||||||    
T  60128 agtttttaaaagttagaggaggaaaagtgcacttta 60093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 154 - 286
Target Start/End: Original strand, 61422 - 61557
Alignment:
Q  154 ttgactttgtcaaaattgactaaaaagatcaaagatgcagagaggctaaatctta-aaggtcaaaattgtaatttttgtacatagaaggccaaaattgca 252  Q
    ||||||| |||||||||||| |||| || |||||||||| |  ||||||||| ||   || ||||||| || ||||||||| |||  ||| |||||||||    
T  61422 ttgacttggtcaaaattgaccaaaaggaccaaagatgcaaaagggctaaatcatagggggccaaaattatagtttttgtacttagggggctaaaattgca 61521  T
Q  253 actttttaaaagttagggga--aaaagtgcacttta 286  Q
    | ||||| ||| ||| ||||  ||||||||||||||    
T  61522 agtttttgaaaattaagggaggaaaagtgcacttta 61557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 56; Significance: 4e-23; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 163 - 286
Target Start/End: Original strand, 16704469 - 16704595
Alignment:
Q  163 tcaaaattgactaaaaagatcaaagatgcagagaggctaaatcttaaagg-tcaaaattgtaatttttgtacatagaaggccaaaattgcaactttttaa 261  Q
    ||||||||||| |||| ||||| || |||| ||||||||||||||||||| ||||||||||| ||||||||| |||  || ||||||||||| ||||| |    
T  16704469 tcaaaattgacaaaaaggatcatagttgcaaagaggctaaatcttaaaggatcaaaattgtagtttttgtacttagggggtcaaaattgcaagtttttga 16704568  T
Q  262 aagttagggga--aaaagtgcacttta 286  Q
    |||||| ||||  ||||||||||||||    
T  16704569 aagttaagggaggaaaagtgcacttta 16704595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 162 - 289
Target Start/End: Original strand, 1829574 - 1829704
Alignment:
Q  162 gtcaaaattgactaaaaagatcaaagatgcagagaggctaaatcttaaaggtc-aaaattgtaatttttgtacatagaaggccaaaattgcaacttttta 260  Q
    |||||||||||| |||| || |||||||||| || ||||||||||||  || | ||||||||| ||||| ||| |||  || ||||||||||| ||||||    
T  1829574 gtcaaaattgaccaaaatgaccaaagatgcaaaggggctaaatcttagggggccaaaattgtagtttttatacttagggggtcaaaattgcaagttttta 1829673  T
Q  261 aaagttagggg--aaaaagtgcactttaacc 289  Q
    |||||||||||  ||||||||||||||||||    
T  1829674 aaagttagggggaaaaaagtgcactttaacc 1829704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 128 - 286
Target Start/End: Complemental strand, 27437992 - 27437831
Alignment:
Q  128 tacacacatggcatgccacacatgcgttgactttgtcaaaattgactaaaaagatcaaagatgcagagaggctaaatcttaaagg-tcaaaattgtaatt 226  Q
    |||||||||||||||||| |   ||||||| || |||||||||| | |||| || ||||| |||| ||  |||||||||||  || ||||||||||| ||    
T  27437992 tacacacatggcatgccaaatcagcgttgatttggtcaaaattggccaaaaggaccaaagttgcaaaggagctaaatcttagggggtcaaaattgtagtt 27437893  T
Q  227 tttgtacatagaaggccaaaattgcaactttttaaaagtt-agggga-aaaagtgcacttta 286  Q
    ||| |  ||||  |||||||||||||||||||| |||||| |||||| ||||||||||||||    
T  27437892 tttatttatagggggccaaaattgcaacttttttaaagttaaggggagaaaagtgcacttta 27437831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 154 - 286
Target Start/End: Original strand, 6842246 - 6842381
Alignment:
Q  154 ttgactttgtcaaaattgactaaaaagatcaaagatgcagagaggctaaatcttaaaggtc-aaaattgtaatttttgtacatagaaggccaaaattgca 252  Q
    ||||||| |||||||||| | |||| ||||||||||||| | || |||||| |||| |  | ||||||||| |||||| ||||||  |||||||||||||    
T  6842246 ttgacttggtcaaaattggccaaaaggatcaaagatgcaaacagactaaattttaaggaactaaaattgtagtttttgcacatagggggccaaaattgca 6842345  T
Q  253 actttttaaaagtt--aggggaaaaagtgcacttta 286  Q
    ||||||| ||| ||  ||||| ||||||||||||||    
T  6842346 actttttgaaacttagagggggaaaagtgcacttta 6842381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 119 - 286
Target Start/End: Complemental strand, 7315052 - 7314883
Alignment:
Q  119 ttaattatttacacacatggcatgccacacatgcgttgactttgtcaaaattgactaaaaagatcaaagatgcagagaggctaaatctta-aaggtcaaa 217  Q
    ||||||| |||||||| |||| ||||||  | ||||||| |  |||||||||||| |||| || |||||||||| || ||||||||||||   |||||||    
T  7315052 ttaattaattacacacgtggcctgccacgtaggcgttgaataagtcaaaattgaccaaaatgaccaaagatgcaaaggggctaaatcttagggggtcaaa 7314953  T
Q  218 attgtaatttttgtacatagaaggccaaaattgcaactttttaaaagtt--aggggaaaaagtgcacttta 286  Q
    |||||  ||||  ||| |||  |||||||||||||| ||||| ||||||  ||||| ||||||||||||||    
T  7314952 attgttgttttgatacttag-gggccaaaattgcaagtttttgaaagttagagggggaaaagtgcacttta 7314883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 162 - 268
Target Start/End: Complemental strand, 26574748 - 26574642
Alignment:
Q  162 gtcaaaattgactaaaaagatcaaagatgcagagaggctaaatcttaaagg-tcaaaattgtaatttttgtacatagaaggccaaaattgcaacttttta 260  Q
    |||||||||||| ||||||||||||| |||| || ||||||||||||| || ||||||| ||| ||||||||| |||| |  ||||||||||| |||||     
T  26574748 gtcaaaattgacaaaaaagatcaaagttgcaaaggggctaaatcttaagggatcaaaat-gtagtttttgtacttagaggttcaaaattgcaagtttttg 26574650  T
Q  261 aaagttag 268  Q
    ||||||||    
T  26574649 aaagttag 26574642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 170 - 291
Target Start/End: Original strand, 3333005 - 3333129
Alignment:
Q  170 tgactaaaaagatcaaagatgcagagaggctaaatcttaaagg-tcaaaattgtaatttttgtacatagaaggccaaaattgcaactttttaaaagttag 268  Q
    ||||||||| |||||||| |||| || |||||||| ||| ||| | ||||||||| |||||||||||||  ||||||||| |||||||||| ||| ||||    
T  3333005 tgactaaaaggatcaaagttgcaaaggggctaaattttagagggttaaaattgtagtttttgtacatagggggccaaaatcgcaactttttcaaacttag 3333104  T
Q  269 --gggaaaaagtgcactttaacctt 291  Q
      ||| ||||||||| |||| ||||    
T  3333105 aaggggaaaagtgcaatttagcctt 3333129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 214 - 286
Target Start/End: Original strand, 30495722 - 30495794
Alignment:
Q  214 caaaattgtaatttttgtacatagaaggccaaaattgcaactttttaaaagttaggggaaaaagtgcacttta 286  Q
    ||||||||| ||||||||||||||  |   ||||| |||||||||| ||||||||||||||||||||||||||    
T  30495722 caaaattgttatttttgtacataggggattaaaatcgcaactttttgaaagttaggggaaaaagtgcacttta 30495794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 162 - 288
Target Start/End: Complemental strand, 5658886 - 5658757
Alignment:
Q  162 gtcaaaattgactaaaaagatcaaagatgcagagaggctaaatcttaaagg-tcaaaattgtaatttttgtacatagaaggccaaaattgcaacttttta 260  Q
    |||||||||||| |||| |||||||| |||| |  ||||||||||||| || ||||||||||| |||||||||||||    | ||||||  |||||||||    
T  5658886 gtcaaaattgaccaaaaggatcaaagttgcaaatgggctaaatcttaagggatcaaaattgtagtttttgtacatagggaactaaaattataacttttta 5658787  T
Q  261 aaagtta--ggggaaaaagtgcactttaac 288  Q
    ||| |||  |||| |||| |||||||||||    
T  5658786 aaacttaaggggggaaaaatgcactttaac 5658757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 162 - 271
Target Start/End: Original strand, 10785884 - 10785994
Alignment:
Q  162 gtcaaaattgactaaaaagatcaaagatgcagagaggctaaatcttaaagg-tcaaaattgtaatttttgtacatagaaggccaaaattgcaacttttta 260  Q
    ||||||||||   |||| |||||||| |||| || ||||||||||||| || | ||||||||| ||||||||| |||  ||  |||||||||| ||||||    
T  10785884 gtcaaaattggtaaaaaggatcaaagttgcaaaggggctaaatcttaaggggttaaaattgtagtttttgtacttagggggttaaaattgcaaattttta 10785983  T
Q  261 aaagttagggg 271  Q
    |||||||||||    
T  10785984 aaagttagggg 10785994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 119 - 286
Target Start/End: Original strand, 7316222 - 7316392
Alignment:
Q  119 ttaattatttacacacatggcatgccacacatgcgttgactttgtcaaaattgactaaaaagatcaaagatgcagagaggctaaatcttaa-aggtcaaa 217  Q
    ||||||| |||||||| |||| ||||||  | ||||||| |  |||||||||||| |||| || || ||||||| || |||||||||||||  || ||||    
T  7316222 ttaattaattacacacgtggcttgccacgtaggcgttgaataagtcaaaattgaccaaaaggaccatagatgcaaaggggctaaatcttaaggggccaaa 7316321  T
Q  218 attgtaatttttgtacatagaaggccaaaattgcaactttttaaaagtta--ggggaaaaagtgcacttta 286  Q
    |||||  |||   ||  |||  |||||||||||||| ||||| |||||||  |||| ||||||||||||||    
T  7316322 attgtggtttcaatatttagggggccaaaattgcaagtttttgaaagttaaggggggaaaagtgcacttta 7316392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 214 - 291
Target Start/End: Complemental strand, 1828816 - 1828737
Alignment:
Q  214 caaaattgtaatttttgtacatagaaggccaaaattgcaactttttaaaagtt--aggggaaaaagtgcactttaacctt 291  Q
    ||||||| ||||||||| || || || ||||||||||||| ||||||||| ||  |||||||||| ||||||||| ||||    
T  1828816 caaaattataatttttgaacttaaaaagccaaaattgcaaatttttaaaaattaaaggggaaaaaatgcactttagcctt 1828737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 214 - 291
Target Start/End: Complemental strand, 29473154 - 29473075
Alignment:
Q  214 caaaattgtaatttttgtacatagaaggccaaaattgcaactttttaaaagtta--ggggaaaaagtgcactttaacctt 291  Q
    ||||||||| |||||||| |||||    |||||||||||||||||||||| |||  |||| |||||||||||| ||||||    
T  29473154 caaaattgttatttttgttcatagggaaccaaaattgcaactttttaaaacttaaggggggaaaagtgcacttgaacctt 29473075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 128 - 286
Target Start/End: Original strand, 49370 - 49531
Alignment:
Q  128 tacacacatggcatgccacacatgcgttgactttgtcaaaattgactaaaaagatcaaagatgcagagaggctaaatcttaaagg-tcaaaattgtaatt 226  Q
    |||||||||||||||||| |   ||||||| || |||||||||| | |||| || ||||| |||| ||  |||||||||||  || ||||||||||| ||    
T  49370 tacacacatggcatgccaaatcagcgttgatttggtcaaaattggccaaaaggaccaaagttgcaaaggagctaaatcttagggggtcaaaattgtagtt 49469  T
Q  227 tttgtacatagaaggccaaaattgcaactttttaaaagtt-agggga-aaaagtgcacttta 286  Q
    ||| |  ||||  |||||||||||||||||||| |||||| |||||| ||||||||||||||    
T  49470 tttatttatagggggccaaaattgcaacttttttaaagttaaggggagaaaagtgcacttta 49531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0321 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: scaffold0321
Description:

Target: scaffold0321; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 210 - 286
Target Start/End: Complemental strand, 18809 - 18731
Alignment:
Q  210 aggtcaaaattgtaatttttgtacatagaaggccaaaattgcaactttttaaaagtta--ggggaaaaagtgcacttta 286  Q
    |||||||||||||| ||||||| ||||| ||| |||||| ||||||||||||||||||   ||||||||||||||||||    
T  18809 aggtcaaaattgtagtttttgttcataggaggtcaaaatcgcaactttttaaaagttaagagggaaaaagtgcacttta 18731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0302 (Bit Score: 44; Significance: 6e-16; HSPs: 2)
Name: scaffold0302
Description:

Target: scaffold0302; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 214 - 286
Target Start/End: Complemental strand, 17547 - 17473
Alignment:
Q  214 caaaattgtaatttttgtacatagaaggccaaaattgcaactttttaaaagtta--ggggaaaaagtgcacttta 286  Q
    |||||||||| ||||||||| |||  |||||||||||||| |||||||||||||  |||||||||||||||||||    
T  17547 caaaattgtagtttttgtacttagggggccaaaattgcaagtttttaaaagttaagggggaaaaagtgcacttta 17473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0302; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 162 - 286
Target Start/End: Original strand, 18747 - 18874
Alignment:
Q  162 gtcaaaattgactaaaaagatcaaagatgcagagaggctaaatcttaaaggtc-aaaattgtaatttttgtacatagaaggccaaaattgcaacttttta 260  Q
    |||||||||||| |||| ||| |||| ||||  | |||||||| |||| || | |||||| || ||||||||| |||  | |||||||||||| ||||||    
T  18747 gtcaaaattgaccaaaatgattaaagttgcaatggggctaaattttaaggggccaaaattatagtttttgtacctaggggaccaaaattgcaaattttta 18846  T
Q  261 aaagttag--gggaaaaagtgcacttta 286  Q
    ||||||||  ||||||||||||||||||    
T  18847 aaagttaggagggaaaaagtgcacttta 18874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0586 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: scaffold0586
Description:

Target: scaffold0586; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 162 - 286
Target Start/End: Original strand, 8998 - 9123
Alignment:
Q  162 gtcaaaattgactaaaaagatcaaagatgca-gagaggctaaatcttaaaggtcaaaattgtaatttttgtacatagaaggccaaaattgcaacttttta 260  Q
    ||||||||||   |||| ||||||||||||| ||| ||||||||||||  || |||||||||| ||||||||||||| |||| |||||  |||||||||     
T  8998 gtcaaaattggtcaaaaggatcaaagatgcatgag-ggctaaatcttaggggccaaaattgtagtttttgtacataggaggcaaaaatcacaactttttg 9096  T
Q  261 aaagttagg-ggaaaaagtgcacttta 286  Q
    ||| | ||| |||||||||||||||||    
T  9097 aaattaaggaggaaaaagtgcacttta 9123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0586; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 183 - 290
Target Start/End: Complemental strand, 6452 - 6342
Alignment:
Q  183 caaagatgcagagaggctaaatcttaaagg-tcaaaattgtaatttttgtacatagaaggccaaaattgcaactttttaaaagtta--ggggaaaaagtg 279  Q
    |||||||||| | |||||||||||||  || ||||||||||| |||||||||||||  ||| ||||| | |||||||| ||| |||  || | |||||||    
T  6452 caaagatgcaaaaaggctaaatcttagggggtcaaaattgtagtttttgtacatagggggctaaaatcgtaactttttgaaacttaagggcggaaaagtg 6353  T
Q  280 cactttaacct 290  Q
    |||||||||||    
T  6352 cactttaacct 6342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1303 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold1303
Description:

Target: scaffold1303; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 154 - 286
Target Start/End: Complemental strand, 1577 - 1442
Alignment:
Q  154 ttgactttgtcaaaattgactaaaaagatcaaagatgcagagaggctaaatctta-aaggtcaaaattgtaatttttgtacatagaaggccaaaattgca 252  Q
    ||||||| |||||||||||| |||| || |||||||||| |  ||||||||||||   |||||||||| || ||||| |||||||  || ||||||||||    
T  1577 ttgacttggtcaaaattgaccaaaaggaccaaagatgcaaatgggctaaatcttagggggtcaaaattatagtttttatacatagggggtcaaaattgca 1478  T
Q  253 actttttaaaagtt--aggggaaaaagtgcacttta 286  Q
    | ||||| ||||||  ||||| |||||| |||||||    
T  1477 agttttttaaagttagagggggaaaagtacacttta 1442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0369 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0369
Description:

Target: scaffold0369; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 215 - 291
Target Start/End: Complemental strand, 13267 - 13191
Alignment:
Q  215 aaaattgtaatttttgtacatagaaggccaaaattgcaactttttaaaagttaggggaaaaagtgcactttaacctt 291  Q
    ||||||||| |||| |||||||| ||| ||||||  ||||||||| ||||||||||| |||||||||||||| ||||    
T  13267 aaaattgtagttttcgtacataggaggtcaaaatcacaactttttcaaagttagggggaaaagtgcactttagcctt 13191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2034 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: scaffold2034
Description:

Target: scaffold2034; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 127 - 286
Target Start/End: Complemental strand, 397 - 236
Alignment:
Q  127 ttacacacatggcatgccacacatgcgttgactttgtcaaaattgactaaaaagatcaaagatgcagagaggctaaatcttaaaggtc-aaaattgtaat 225  Q
    |||||||| |||||||||||| | ||||||||   ||||||||||   |||| ||||||| ||||| || |||||| |||||  || | |||||| || |    
T  397 ttacacacgtggcatgccacataggcgttgaccg-gtcaaaattgggaaaaaggatcaaatatgcaaaggggctaattcttaggggaccaaaattatagt 299  T
Q  226 ttttgtacatagaaggccaaaattgcaactttttaaaagtta--ggggaaaaagtgcacttta 286  Q
    ||||||||||||  | |||||||||||||||||| |||||||  ||||  |||||||||||||    
T  298 ttttgtacataggggaccaaaattgcaactttttgaaagttaagggggggaaagtgcacttta 236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2034; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 214 - 267
Target Start/End: Original strand, 1002 - 1055
Alignment:
Q  214 caaaattgtaatttttgtacatagaaggccaaaattgcaactttttaaaagtta 267  Q
    ||||||| || ||||||||||||   | ||||||||||||||||||||||||||    
T  1002 caaaattatagtttttgtacataagggaccaaaattgcaactttttaaaagtta 1055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0320 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0320
Description:

Target: scaffold0320; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 119 - 253
Target Start/End: Complemental strand, 19661 - 19526
Alignment:
Q  119 ttaattatttacacacatggcatgccacacatgcgttgactttgtcaaaattgactaaaaagatcaaagatgcagagaggctaaatcttaaagg-tcaaa 217  Q
    ||||||| |||||||  |||| ||||||  | ||||||| |  |||||||||||| |||| ||||||||||||| || || |||||||||  || |||||    
T  19661 ttaattaattacacatgtggcctgccacgtaggcgttgaataagtcaaaattgaccaaaatgatcaaagatgcaaaggggttaaatcttaggggatcaaa 19562  T
Q  218 attgtaatttttgtacatagaaggccaaaattgcaa 253  Q
    |||||| ||||| ||| |||  ||||||||||||||    
T  19561 attgtagtttttatacttagggggccaaaattgcaa 19526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0186 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0186
Description:

Target: scaffold0186; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 225 - 286
Target Start/End: Complemental strand, 23145 - 23084
Alignment:
Q  225 tttttgtacatagaaggccaaaattgcaactttttaaaagttaggggaaaaagtgcacttta 286  Q
    |||| |||| |||| || ||||||||||| ||||| ||||||||||| ||||||||||||||    
T  23145 ttttggtacttagagggacaaaattgcaagtttttgaaagttagggggaaaagtgcacttta 23084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 170 - 291
Target Start/End: Original strand, 7394 - 7518
Alignment:
Q  170 tgactaaaaagatcaaagatgcagagaggctaaatctta-aaggtcaaaattgtaatttttgtacatagaaggccaaaattgcaactttttaaaagtt-- 266  Q
    ||||||||| |||||||| |||| || ||||||||||||   ||||||||||||| ||| |||||||||  || |||||| | |||||||| ||| ||      
T  7394 tgactaaaaggatcaaagttgcaaaggggctaaatcttagggggtcaaaattgtagtttctgtacatagggggtcaaaatcgtaactttttcaaacttag 7493  T
Q  267 aggggaaaaagtgcactttaacctt 291  Q
    ||||| | |||||||||||| ||||    
T  7494 agggggacaagtgcactttagcctt 7518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0059 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 162 - 276
Target Start/End: Complemental strand, 3805 - 3690
Alignment:
Q  162 gtcaaaattgactaaaaagatcaaagatgcagagaggctaaatcttaaaggtc-aaaattgtaatttttgtacatagaaggccaaaattgcaacttttta 260  Q
    |||||||||||| |||||||| |||| ||||  | ||||||||||||  || | |||||| || ||| | |||  ||  |||||||||||||| |||||     
T  3805 gtcaaaattgaccaaaaagattaaagttgcaatgcggctaaatcttaggggactaaaattatagtttctttactcagggggccaaaattgcaagtttttg 3706  T
Q  261 aaagttaggggaaaaa 276  Q
    ||||||||||||||||    
T  3705 aaagttaggggaaaaa 3690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0059; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 211 - 286
Target Start/End: Original strand, 4751 - 4827
Alignment:
Q  211 ggtcaaaattgtaatttttgtacatagaaggccaaaattgcaactttttaaaagttaggg-gaaaaagtgcacttta 286  Q
    ||||||||||||| ||| ||||  |||  |||||||||||||  |||||||||||||||| |  |||||||||||||    
T  4751 ggtcaaaattgtagtttctgtatttagggggccaaaattgcatgtttttaaaagttagggagggaaagtgcacttta 4827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0112 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0112
Description:

Target: scaffold0112; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 214 - 286
Target Start/End: Complemental strand, 37224 - 37151
Alignment:
Q  214 caaaattgtaatttttgtacatagaaggccaaaattgcaacttttt-aaaagttaggggaaaaagtgcacttta 286  Q
    |||||||||  ||||||||| |||  || ||||||||||| ||||| ||||| |||||| ||||||||||||||    
T  37224 caaaattgttgtttttgtacttagggggtcaaaattgcaaattttttaaaagatagggggaaaagtgcacttta 37151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0294 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 154 - 286
Target Start/End: Original strand, 5401 - 5536
Alignment:
Q  154 ttgactttgtcaaaattgactaaaaagatcaaagatgcagagaggctaaatcttaaaggt-caaaattgtaatttttgtacatagaaggccaaaattgca 252  Q
    ||||||| ||||||||| || |||| |||||||  || |  | ||||||||||||| ||  |||||||||| ||||||||| ||   || ||||||||||    
T  5401 ttgacttggtcaaaattaaccaaaaggatcaaatttgtaatggggctaaatcttaagggggcaaaattgtagtttttgtacttaaggggtcaaaattgca 5500  T
Q  253 actttttaaaagtta--ggggaaaaagtgcacttta 286  Q
    | ||||| ||| |||  |||| ||||||||||||||    
T  5501 agtttttgaaaattagggggggaaaagtgcacttta 5536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 215 - 267
Target Start/End: Original strand, 49109 - 49161
Alignment:
Q  215 aaaattgtaatttttgtacatagaaggccaaaattgcaactttttaaaagtta 267  Q
    ||||||||| ||||  ||| ||| ||||||||||||||| |||||||||||||    
T  49109 aaaattgtagttttaatacttaggaggccaaaattgcaagtttttaaaagtta 49161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University