View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18198_high_16 (Length: 276)
Name: NF18198_high_16
Description: NF18198
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18198_high_16 |
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Alignment Details
Target: chr4 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 9 - 260
Target Start/End: Complemental strand, 1855573 - 1855322
Alignment:
| Q |
9 |
aactatatagtttgaaacttaaaaatacgtttaggatttgcttacaactaaaaataatagcatgttagcccaattcggcaaagaaggcgattaaaccgtt |
108 |
Q |
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| T |
1855573 |
aactatatagtttgaaacttaaaaatacgtttaggatttgcttacaactaaaaataatagcatgttagcccaattcggcaaagaaggcgattaaaccgtt |
1855474 |
T |
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| Q |
109 |
agttgaggaagcctcccatccgattg-agcttatacaatgctagagctgccaagcgaggaagctgattcattttgtaggccgctaattttgaacgtgagt |
207 |
Q |
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| T |
1855473 |
agttgaggaagcctcccatccgattgaagcttatacaatgctagagctgccaagcgaggaagctgattcattctcaaggccgttaattttgaacgtgagt |
1855374 |
T |
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| Q |
208 |
cttaaggattaagaacctagtcaaaacgtagtgagattggactatgatgcgat |
260 |
Q |
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| T |
1855373 |
cttaaggattaagaatcgagtcaaaacgtagtgagattggact-tgatgcgat |
1855322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 194 - 260
Target Start/End: Complemental strand, 1847023 - 1846956
Alignment:
| Q |
194 |
ttttgaacgtgagtctt-aaggattaagaacctagtcaaaacgtagtgagattggactatgatgcgat |
260 |
Q |
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| T |
1847023 |
ttttgaacgtgagtctttaagaattaagaaccgagtcaaaacaaagtgagattggactatgatgcgat |
1846956 |
T |
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