View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18198_high_8 (Length: 327)
Name: NF18198_high_8
Description: NF18198
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18198_high_8 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 1 - 310
Target Start/End: Complemental strand, 24812258 - 24811949
Alignment:
| Q |
1 |
atggaatcgcgtccaatatgatgcgattagataagcttaagttccatttcatgaatgatatacaaaatgtcatgatccaaactttgagcaatttcaaaaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24812258 |
atggaatcgcgtccaatatgatgcgattagataagcttaagttccatttcatgaatgatatacaaaatgtcatgatccaaactttgagcaatttcaaaaa |
24812159 |
T |
|
| Q |
101 |
ccaacaagtaattcttctccaagatgtttgtagaaaggtaacgatccatttactttctaacaacatttttattttcaattatgagaaatttatcgcggaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
24812158 |
ccaacaagtaattcttctccaagatgtttgtagaaaggtaacgatccatttactttctaacaacattttcattttcaattatgagaaatttatcgcggaa |
24812059 |
T |
|
| Q |
201 |
catgatttaatgcaggtagctataaatttaatggttaatcaactattaggggtttcaagtgagtctcaagtcaatgaaatggctcagttgttttccgatt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24812058 |
catgatttaatgcaggtagctataaatttaatggttaatcaactattaggggtttcaagtgagtctcaagtcaatgaaatggctcagttgttttccgatt |
24811959 |
T |
|
| Q |
301 |
tcgttgatgg |
310 |
Q |
| |
|
|||||||||| |
|
|
| T |
24811958 |
tcgttgatgg |
24811949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University