View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18198_low_11 (Length: 313)
Name: NF18198_low_11
Description: NF18198
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18198_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 255; Significance: 1e-142; HSPs: 9)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 51 - 305
Target Start/End: Original strand, 27215450 - 27215704
Alignment:
| Q |
51 |
cgcatgaagagaaattaacttagctaagtgaattgattaattatatggaaaattaatgtagttatgtattgatatatgtacgtaccgtagaagaggaatg |
150 |
Q |
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| T |
27215450 |
cgcatgaagagaaattaacttagctaagtgaattgattaattatatggaaaattaatgtagttatgtattgatatatgtacgtaccgtagaagaggaatg |
27215549 |
T |
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| Q |
151 |
caaaactaaggcacagagcaacacgggtgcttgtcattttggatatggcttttgattaatcttgttttgcaggcttgtgaatatatattaattagtgaga |
250 |
Q |
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| T |
27215550 |
caaaactaaggcacagagcaacacgggtgcttgtcattttggatatggcttttgattaatcttgttttgcaggcttgtgaatatatattaattagtgaga |
27215649 |
T |
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| Q |
251 |
gtttttcgattgtagtttgttgtgtgaaggtgatttgatgaagttgctctctgct |
305 |
Q |
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| T |
27215650 |
gtttttcgattgtagtttgttgtgtgaaggtgatttgatgaagttgctctctgct |
27215704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 51 - 234
Target Start/End: Original strand, 27221412 - 27221595
Alignment:
| Q |
51 |
cgcatgaagagaaattaacttagctaagtgaattgattaattatatggaaaattaatgtagttatgtattgatatatgtacgtaccgtagaagaggaatg |
150 |
Q |
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| T |
27221412 |
cgcatgaagagaaattaacttagctaagtgaattgattaattatatggaaaattaatgtagttatgtattgatatatgtacgtaccatagaagaggaatg |
27221511 |
T |
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| Q |
151 |
caaaactaaggcacagagcaacacgggtgcttgtcattttggatatggcttttgattaatcttgttttgcaggcttgtgaatat |
234 |
Q |
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| T |
27221512 |
caaaactaaggcatagagcaacgcgggtgcttgtcattttggatatggcttttgatgaatcttgttttgcaggcttgtgaatat |
27221595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 51 - 234
Target Start/End: Complemental strand, 27443428 - 27443248
Alignment:
| Q |
51 |
cgcatgaagagaaattaacttagctaagtgaattgattaattatatggaa---aattaatgtagttatgtattgatatatgtacgtaccgtagaagagga |
147 |
Q |
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|||| ||||| ||||| |||||||||| ||||||||||||| |||||||| ||||||||||||| ||| |||||||| |||| |||||||||| |
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| T |
27443428 |
cgcaagaagaaaaatttacttagctaaatgaattgattaatcatatggaaattaattaatgtagttgagtagtgatatat----ataccatagaagagga |
27443333 |
T |
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| Q |
148 |
atgcaaaactaaggcacagagcaacacgggtgcttgtcattttggatatggcttttgattaatcttgttttgcaggcttgtgaatat |
234 |
Q |
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| T |
27443332 |
atgcaaaactaaggcatagagcaacacgagtgcttgtcattttggatatggc--ttgatgaatcttgttttgcaggcttgtgaatat |
27443248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 81 - 234
Target Start/End: Original strand, 27433215 - 27433367
Alignment:
| Q |
81 |
aattgattaattatatggaaaattaatgtagtt--atg--tattgatatatgtacgtaccgtagaagaggaatgcaaaactaaggcacagagcaacacgg |
176 |
Q |
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| T |
27433215 |
aatttattaactatatggaaaattaatgtagttgaatgagtactgatatatat---taccatagaagaggaatgccaagctaaagcataaagcaacatgg |
27433311 |
T |
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| Q |
177 |
gtgcttgtcattttggatatggcttttgattaatcttgttttgcaggcttgtgaatat |
234 |
Q |
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| T |
27433312 |
gtgttcttcattttggatatgactt--gattaatcttgttttgcaggcttgtgaatat |
27433367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 53 - 196
Target Start/End: Original strand, 27208103 - 27208246
Alignment:
| Q |
53 |
catgaagagaaattaacttagctaagtgaatt----gattaattatatggaaaattaatgtagttatgtattgatatatgtacgtaccgtagaagaggaa |
148 |
Q |
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| T |
27208103 |
catgaagagaaataaactaagctaaatgaattaatggattaactatatggaaaattaatgtagttgagtactgatatat----ataccatagaagaggaa |
27208198 |
T |
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| Q |
149 |
tgcaaaactaaggcacagagcaacacgggtgcttgtcattttggatat |
196 |
Q |
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| T |
27208199 |
tgcaaagctaaagcataaagcaacacggttgcacttcattttggatat |
27208246 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 254 - 305
Target Start/End: Complemental strand, 27443241 - 27443191
Alignment:
| Q |
254 |
tttcgattgtagtttgttgtgtgaaggtgatttgatgaagttgctctctgct |
305 |
Q |
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| T |
27443241 |
tttcgattgtagtttgctgtttgaaggtga-ttgatgaagttgttctctgct |
27443191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 133 - 175
Target Start/End: Original strand, 27390262 - 27390304
Alignment:
| Q |
133 |
taccgtagaagaggaatgcaaaactaaggcacagagcaacacg |
175 |
Q |
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| T |
27390262 |
taccatagaagaggaatgcaaagctaaggcagagagcaacacg |
27390304 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 133 - 175
Target Start/End: Original strand, 27410497 - 27410539
Alignment:
| Q |
133 |
taccgtagaagaggaatgcaaaactaaggcacagagcaacacg |
175 |
Q |
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| T |
27410497 |
taccatagaagaggaatgcaaagctaaggcagagagcaacacg |
27410539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 81 - 127
Target Start/End: Original strand, 27455363 - 27455409
Alignment:
| Q |
81 |
aattgattaattatatggaaaattaatgtagttatgtattgatatat |
127 |
Q |
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| T |
27455363 |
aattgatttactatatggaaaattaatgtagttgggtattgatatat |
27455409 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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