View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18198_low_12 (Length: 312)
Name: NF18198_low_12
Description: NF18198
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18198_low_12 |
 | |
|
| [»] chr5 (9 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 288; Significance: 1e-161; HSPs: 9)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 1 - 312
Target Start/End: Complemental strand, 34233283 - 34232972
Alignment:
| Q |
1 |
aagatccaagacttcaagactgttcaaattggttaattctgcaggaatcataccagtgagaatatttgtcgagagatccaatgattccaagtttgtcaag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| |||||||||||||||||| |
|
|
| T |
34233283 |
aagatccaagacttcaagactgttcaaattggttaattctgcaggaatcataccagtgagcatatttgacgagagatccaacgattccaagtttgtcaag |
34233184 |
T |
|
| Q |
101 |
tttagtatggattgaggaataggaccagttagtctgttatgtgaaaggttaagccctttgagtgcgtgaagttctcctatatcatttggaattcctccat |
200 |
Q |
| |
|
||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34233183 |
ttttgtatggattgaggaataggaccagtgagtctgttatgtgaaaggttaagccctttgagtgcgtgaagttctcctatatcatttggaattcctccat |
34233084 |
T |
|
| Q |
201 |
taaacttgtttcttgagaaatcaatagttacaaagtttattggaatttttaccaatgtcatattgatccctttgtttgccacagtcacagaatcatagga |
300 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34233083 |
taaacttgtttcttgagaaatcaatacttacaaagtttattggaatttttaccaatgtcatattgatccctttgtttgccacagtcacagaatcatagga |
34232984 |
T |
|
| Q |
301 |
ccctgctgaatc |
312 |
Q |
| |
|
|||||||||||| |
|
|
| T |
34232983 |
ccctgctgaatc |
34232972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 298
Target Start/End: Complemental strand, 34241056 - 34240759
Alignment:
| Q |
1 |
aagatccaagacttcaagactgttcaaattggttaattctgcaggaatcataccagtgagaatatttgtcgagagatccaatgattccaagtttgtcaag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| |||||||||||||||||| |
|
|
| T |
34241056 |
aagatccaagacttcaagactgttcaaattggttaattctgcaggaatcataccagtgagcatatttgacgagagatccaacgattccaagtttgtcaag |
34240957 |
T |
|
| Q |
101 |
tttagtatggattgaggaataggaccagttagtctgttatgtgaaaggttaagccctttgagtgcgtgaagttctcctatatcatttggaattcctccat |
200 |
Q |
| |
|
||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34240956 |
ttttgtatggattgaggaataggaccagtgagtctgttatgtgaaaggttaagccctttgagtgcgtgaagttctcctatatcatttggaattcctccat |
34240857 |
T |
|
| Q |
201 |
taaacttgtttcttgagaaatcaatagttacaaagtttattggaatttttaccaatgtcatattgatccctttgtttgccacagtcacagaatcatag |
298 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||| || |||||||||| || |||||| ||||| ||||| | | ||||||||||||||||||| |
|
|
| T |
34240856 |
taaacttgtttcttgagaaatcaatacttacaaacattgttggaattttcgtcagtgtcattttgatgccttttgtcgtcacagtcacagaatcatag |
34240759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 1 - 298
Target Start/End: Original strand, 42117332 - 42117629
Alignment:
| Q |
1 |
aagatccaagacttcaagactgttcaaattggttaattctgcaggaatcataccagtgagaatatttgtcgagagatccaatgattccaagtttgtcaag |
100 |
Q |
| |
|
||||| |||||||| |||| || |||||||||||||||||||| |||||||| || || ||||||| |||||||||||||||||||||||||| |||| |
|
|
| T |
42117332 |
aagattcaagacttgaagaaagtctaaattggttaattctgcagggatcataccggtaagcatatttgacgagagatccaatgattccaagtttgacaag |
42117431 |
T |
|
| Q |
101 |
tttagtatggattgaggaataggaccagttagtctgttatgtgaaaggttaagccctttgagtgcgtgaagttctcctatatcatttggaattcctccat |
200 |
Q |
| |
|
||| ||||||| |||||| |||| || ||||||||||| ||||||||||||||||||||||| || || ||||| ||| |||||||||| |||| | |
|
|
| T |
42117432 |
tttcccatggatttgggaatatgaccggtgagtctgttatgggaaaggttaagccctttgagtgcatggaggtctccaatagcatttggaatctctccct |
42117531 |
T |
|
| Q |
201 |
taaacttgtttcttgagaaatcaatagttacaaagtttattggaatttttaccaatgtcatattgatccctttgtttgccacagtcacagaatcatag |
298 |
Q |
| |
|
||| |||||| |||| ||||||||| ||||||| | |||||||||| ||||||||||| ||| ||||||| | | |||| |||||||||||||| |
|
|
| T |
42117532 |
caaatttgttttttgacaaatcaataattacaaaaatgtttggaattttcaccaatgtcattttgctcccttttgtcgacacaatcacagaatcatag |
42117629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 1 - 249
Target Start/End: Complemental strand, 41714048 - 41713800
Alignment:
| Q |
1 |
aagatccaagacttcaagactgttcaaattggttaattctgcaggaatcataccagtgagaatatttgtcgagagatccaatgattccaagtttgtcaag |
100 |
Q |
| |
|
||||||||||||||||||| || |||||||||||| | | |||||||| ||||||||| ||||||| ||||||||||||||||||||||||| ||||| |
|
|
| T |
41714048 |
aagatccaagacttcaagaaagtccaaattggttaactttacaggaatccgaccagtgagcatatttgacgagagatccaatgattccaagtttatcaag |
41713949 |
T |
|
| Q |
101 |
tttagtatggattgaggaataggaccagttagtctgttatgtgaaaggttaagccctttgagtgcgtgaagttctcctatatcatttggaattcctccat |
200 |
Q |
| |
|
||| |||||||| ||||| ||||||| ||| |||||| ||||||||||||||||||||| | ||||| ||||| ||| ||| |||||| | |||| |
|
|
| T |
41713948 |
tttcccatggattggggaatgtgaccagtgagtttgttatatgaaaggttaagccctttgagatcatgaagctctccaataacatctggaatctccccat |
41713849 |
T |
|
| Q |
201 |
taaacttgtttcttgagaaatcaatagttacaaagtttattggaatttt |
249 |
Q |
| |
|
||| || |||||||| ||||||||| || ||||| || |||||||||| |
|
|
| T |
41713848 |
caaatttatttcttgaaaaatcaatacttgcaaagatttttggaatttt |
41713800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 8 - 295
Target Start/End: Original strand, 42123087 - 42123374
Alignment:
| Q |
8 |
aagacttcaagactgttcaaattggttaattctgcaggaatcataccagtgagaatatttgtcgagagatccaatgattccaagtttgtcaagtttagta |
107 |
Q |
| |
|
|||||||||||| | ||||||||||| |||||||||||||| | ||||||| ||||||| ||||||||||| |||||||||||| ||||| | | |
|
|
| T |
42123087 |
aagacttcaagaaagcccaaattggttagttctgcaggaatcacatcagtgagcatatttgatgagagatccaaccattccaagtttgacaagtatccaa |
42123186 |
T |
|
| Q |
108 |
tggattgaggaataggaccagttagtctgttatgtgaaaggttaagccctttgagtgcgtgaagttctcctatatcatttggaattcctccattaaactt |
207 |
Q |
| |
|
| ||||| |||||||||||| | ||||||||||| ||||||||||||||| ||||||| || || | ||| ||| |||||||||| |||| | ||| || |
|
|
| T |
42123187 |
ttgattggggaataggaccattgagtctgttatgggaaaggttaagccctatgagtgcatgtagctttccaatagcatttggaatctctccttcaaattt |
42123286 |
T |
|
| Q |
208 |
gtttcttgagaaatcaatagttacaaagtttattggaatttttaccaatgtcatattgatccctttgtttgccacagtcacagaatca |
295 |
Q |
| |
|
||||||||| | ||||||| ||||||| ||| |||||||||| || | |||||| ||| | ||||| ||||||| |||||||||||| |
|
|
| T |
42123287 |
gtttcttgacatatcaatacttacaaacttttttggaattttaacgagtgtcattttggttccttttgttgccacggtcacagaatca |
42123374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 25 - 298
Target Start/End: Original strand, 42128498 - 42128771
Alignment:
| Q |
25 |
caaattggttaattctgcaggaatcataccagtgagaatatttgtcgagagatccaatgattccaagtttgtcaagtttagtatggattgaggaatagga |
124 |
Q |
| |
|
||||||| |||||||||||||||||| | ||||||| | ||||| ||||||||||| |||||||||||||||||||| ||||||| |||||||| |
|
|
| T |
42128498 |
caaattgcttaattctgcaggaatcacatcagtgagcacatttgatgagagatccaaccattccaagtttgtcaagtttcccatggattttggaataggg |
42128597 |
T |
|
| Q |
125 |
ccagttagtctgttatgtgaaaggttaagccctttgagtgcgtgaagttctcctatatcatttggaattcctccattaaacttgtttcttgagaaatcaa |
224 |
Q |
| |
|
||| | ||| ||||||| |||||||| || ||| | ||||| ||||| || || | |||||||||||| |||| | ||| ||||||||||| ||||||| |
|
|
| T |
42128598 |
ccaatgagtttgttatgggaaaggttgagtcctattagtgcatgaagctcaccaaaatcatttggaatatctccttcaaatttgtttcttgacaaatcaa |
42128697 |
T |
|
| Q |
225 |
tagttacaaagtttattggaatttttaccaatgtcatattgatccctttgtttgccacagtcacagaatcatag |
298 |
Q |
| |
|
|| |||||||| | |||||||||| ||||||||| | ||| ||||||| | |||||| ||| |||||||||| |
|
|
| T |
42128698 |
taattacaaagatatttggaattttcaccaatgtccttttgttcccttttgtcgccacaatcatagaatcatag |
42128771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 1 - 171
Target Start/End: Complemental strand, 41572509 - 41572339
Alignment:
| Q |
1 |
aagatccaagacttcaagactgttcaaattggttaattctgcaggaatcataccagtgagaatatttgtcgagagatccaatgattccaagtttgtcaag |
100 |
Q |
| |
|
||||| ||| ||| ||| || ||||| |||| ||||||||| |||||| | ||||||||| ||||||| ||| |||||||||||||||| ||||| |||| |
|
|
| T |
41572509 |
aagattcaatactccaataccgttcagattgattaattctgaaggaattacaccagtgagtatatttgacgaaagatccaatgattccatgtttgacaag |
41572410 |
T |
|
| Q |
101 |
tttagtatggattgaggaataggaccagttagtctgttatgtgaaaggttaagccctttgagtgcgtgaag |
171 |
Q |
| |
|
||| || |||||||||||||||||| || ||||||||||| |||||||||||||||||||||| |||||| |
|
|
| T |
41572409 |
tttcctacggattgaggaataggaccggtgagtctgttatgggaaaggttaagccctttgagtgagtgaag |
41572339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 1 - 171
Target Start/End: Complemental strand, 41618148 - 41617978
Alignment:
| Q |
1 |
aagatccaagacttcaagactgttcaaattggttaattctgcaggaatcataccagtgagaatatttgtcgagagatccaatgattccaagtttgtcaag |
100 |
Q |
| |
|
||||| ||| ||| ||| || ||||| |||| ||||||||| |||||| | ||||||||| ||||||| ||| |||||||||||||||| ||||| |||| |
|
|
| T |
41618148 |
aagattcaatactccaataccgttcagattgattaattctgaaggaattacaccagtgagtatatttgacgaaagatccaatgattccatgtttgacaag |
41618049 |
T |
|
| Q |
101 |
tttagtatggattgaggaataggaccagttagtctgttatgtgaaaggttaagccctttgagtgcgtgaag |
171 |
Q |
| |
|
||| || |||||||||||||||||| || ||||||||||| |||||||||||||||||||||| |||||| |
|
|
| T |
41618048 |
tttcctacggattgaggaataggaccggtgagtctgttatgggaaaggttaagccctttgagtgagtgaag |
41617978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 26 - 235
Target Start/End: Original strand, 41443970 - 41444179
Alignment:
| Q |
26 |
aaattggttaattctgcaggaatcataccagtgagaatatttgtcgagagatccaatgattccaagtttgtcaagtttagtatggattgaggaataggac |
125 |
Q |
| |
|
||||||||||| |||| ||||||| |||||||||| ||||||| |||||||||| |||||| | |||| |||| ||| | |||||||||||| | || |
|
|
| T |
41443970 |
aaattggttaactctgtaggaatcctaccagtgagcatatttgaggagagatccattgattcgatgtttatcaaatttccaaaggattgaggaatcgcac |
41444069 |
T |
|
| Q |
126 |
cagttagtctgttatgtgaaaggttaagccctttgagtgcgtgaagttctcctatatcatttggaattcctccattaaacttgtttcttgagaaatcaat |
225 |
Q |
| |
|
|||| ||| | || || |||||||| || ||| ||| ||| ||||| || || ||| |||||||||| |||| | ||| ||||||| ||| |||||||| |
|
|
| T |
41444070 |
cagtaagtttattgtgggaaaggttgagtcctatgattgcatgaagctcaccaataacatttggaatgtctccttcaaatttgtttcctgaaaaatcaat |
41444169 |
T |
|
| Q |
226 |
agttacaaag |
235 |
Q |
| |
|
| |||||||| |
|
|
| T |
41444170 |
acttacaaag |
41444179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 107; Significance: 1e-53; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 7 - 293
Target Start/End: Original strand, 24140436 - 24140722
Alignment:
| Q |
7 |
caagacttcaagactgttcaaattggttaattctgcaggaatcataccagtgagaatatttgtcgagagatccaatgattccaagtttgtcaagtttagt |
106 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| | |||||||| || || | ||||||| || |||| ||| |||||||||| |||||| ||| |
|
|
| T |
24140436 |
caagacttcaagactgttcatattggttaattccgaaggaatcacgccggttaacatatttgatgaaagattcaaagattccaagtatgtcaactttccg |
24140535 |
T |
|
| Q |
107 |
atggattgaggaataggaccagttagtctgttatgtgaaaggttaagccctttgagtgcgtgaagttctcctatatcatttggaattcctccattaaact |
206 |
Q |
| |
|
|||||||| |||||| ||||||| ||||||||||| |||||||||| |||||||||||| ||||| ||||| ||| |||||||||| |||| | ||| | |
|
|
| T |
24140536 |
atggattggggaatatgaccagtaagtctgttatgggaaaggttaatccctttgagtgcatgaagctctccgatagcatttggaatctctccttcaaatt |
24140635 |
T |
|
| Q |
207 |
tgtttcttgagaaatcaatagttacaaagtttattggaatttttaccaatgtcatattgatccctttgtttgccacagtcacagaat |
293 |
Q |
| |
|
|||||||||| | ||| ||| ||||||| ||| |||||||||| |||| |||||| ||| ||||||| |||||||||||||||||| |
|
|
| T |
24140636 |
tgtttcttgacatatcgatacttacaaacttttttggaattttcaccagtgtcattttggtcccttttgttgccacagtcacagaat |
24140722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 1 - 294
Target Start/End: Complemental strand, 25523524 - 25523231
Alignment:
| Q |
1 |
aagatccaagacttcaagactgttcaaattggttaattctgcaggaatcataccagtgagaatatttgtcgagagatccaatgattccaagtttgtcaag |
100 |
Q |
| |
|
||||| || |||||||||| ||| |||||||||||||| |||||||||| ||| || | ||||| || ||||||| |||||||||| ||||||| |
|
|
| T |
25523524 |
aagattcatgacttcaagaaagtttaaattggttaattccgcaggaatcacaccggttaacatattcagggaaagatccagagattccaagtatgtcaag |
25523425 |
T |
|
| Q |
101 |
tttagtatggattgaggaataggaccagttagtctgttatgtgaaaggttaagccctttgagtgcgtgaagttctcctatatcatttggaattcctccat |
200 |
Q |
| |
|
||| |||||||| |||||| |||| || |||||||| || ||||||||||||||||||||||| ||||| ||||| ||| |||||||||| |||| | |
|
|
| T |
25523424 |
tttcctatggatttgggaatatgaccggtaagtctgttgtgggaaaggttaagccctttgagtgcatgaagctctccaatagcatttggaatctctcctt |
25523325 |
T |
|
| Q |
201 |
taaacttgtttcttgagaaatcaatagttacaaagtttattggaatttttaccaatgtcatattgatccctttgtttgccacagtcacagaatc |
294 |
Q |
| |
|
||| ||||||||||| |||||||||| |||||| |||||||||||||| |||||| |||| | |||||||| ||||||||||||||||||| |
|
|
| T |
25523324 |
caaatttgtttcttgaaaaatcaatagatacaaactttattggaattttcaccaatttcatttgaatcccttttgttgccacagtcacagaatc |
25523231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 99; Significance: 7e-49; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 8 - 294
Target Start/End: Original strand, 11117750 - 11118036
Alignment:
| Q |
8 |
aagacttcaagactgttcaaattggttaattctgcaggaatcataccagtgagaatatttgtcgagagatccaatgattccaagtttgtcaagtttagta |
107 |
Q |
| |
|
|||||||||||| | |||||||||||||||||||||||||| || || | ||||||| || |||||||| |||||||||| || ||||||| || |
|
|
| T |
11117750 |
aagacttcaagaaagcccaaattggttaattctgcaggaatcacactggttaacatatttgatgaaagatccaaagattccaagtatgccaagtttccta |
11117849 |
T |
|
| Q |
108 |
tggattgaggaataggaccagttagtctgttatgtgaaaggttaagccctttgagtgcgtgaagttctcctatatcatttggaattcctccattaaactt |
207 |
Q |
| |
|
|||| | |||||| ||||||| ||||||||| | ||||| ||||||||||||||||| ||||| ||||| ||| |||||| ||| |||| | ||| || |
|
|
| T |
11117850 |
tggagttgggaatatgaccagtaagtctgttacgggaaagattaagccctttgagtgcatgaagctctccaatagcatttgtaatctctccttcaaattt |
11117949 |
T |
|
| Q |
208 |
gtttcttgagaaatcaatagttacaaagtttattggaatttttaccaatgtcatattgatccctttgtttgccacagtcacagaatc |
294 |
Q |
| |
|
||||||||| ||||||||| |||| || |||||||||||||| |||| |||||| ||| ||||||| || |||||||||||||||| |
|
|
| T |
11117950 |
gtttcttgacaaatcaatacttactaactttattggaattttcaccagtgtcattttgttcccttttatttccacagtcacagaatc |
11118036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 94; Significance: 7e-46; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 25 - 298
Target Start/End: Original strand, 12248063 - 12248336
Alignment:
| Q |
25 |
caaattggttaattctgcaggaatcataccagtgagaatatttgtcgagagatccaatgattccaagtttgtcaagtttagtatggattgaggaatagga |
124 |
Q |
| |
|
|||||||||||||| ||| ||||||| | ||||||| ||||||| |||||||||| |||||||||||||||||||| ||||||| ||||||||| |
|
|
| T |
12248063 |
caaattggttaattttgctggaatcacatcagtgagcatatttgatgagagatccagccattccaagtttgtcaagtttcccatggatttgggaatagga |
12248162 |
T |
|
| Q |
125 |
ccagttagtctgttatgtgaaaggttaagccctttgagtgcgtgaagttctcctatatcatttggaattcctccattaaacttgtttcttgagaaatcaa |
224 |
Q |
| |
|
||| | ||||||||||| ||||||||||||||| | ||||| ||||| || | ||| |||||||||| |||| | ||| ||||||||||| ||||||| |
|
|
| T |
12248163 |
ccaatgagtctgttatgggaaaggttaagccctataagtgcttgaagctcatcaataacatttggaatctctccttcaaatttgtttcttgacaaatcaa |
12248262 |
T |
|
| Q |
225 |
tagttacaaagtttattggaatttttaccaatgtcatattgatccctttgtttgccacagtcacagaatcatag |
298 |
Q |
| |
|
|| |||| ||| | |||||||||| ||| ||||||| ||| ||||||| ||||||| |||||||||||||| |
|
|
| T |
12248263 |
taattactaagatgtttggaattttaacccatgtcattttgttcccttttgatgccacaatcacagaatcatag |
12248336 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 25 - 298
Target Start/End: Complemental strand, 11994866 - 11994593
Alignment:
| Q |
25 |
caaattggttaattctgcaggaatcataccagtgagaatatttgtcgagagatccaatgattccaagtttgtcaagtttagtatggattgaggaatagga |
124 |
Q |
| |
|
|||||||||||||| ||| ||||||| | ||||||| ||||||| |||||||||| |||||||||||||||||||| ||||||| ||||||||| |
|
|
| T |
11994866 |
caaattggttaattttgctggaatcacatcagtgagcatatttgatgagagatccagccattccaagtttgtcaagtttcccatggatttgggaatagga |
11994767 |
T |
|
| Q |
125 |
ccagttagtctgttatgtgaaaggttaagccctttgagtgcgtgaagttctcctatatcatttggaattcctccattaaacttgtttcttgagaaatcaa |
224 |
Q |
| |
|
||| | ||||||||||| ||||||||||||||| | ||||| ||||| || | ||| |||||||||| |||| | ||| ||||||||||| ||||||| |
|
|
| T |
11994766 |
ccaatgagtctgttatgggaaaggttaagccctataagtgcttgaagctcatcaataacatttggaatctctccttcaaatttgtttcttgacaaatcaa |
11994667 |
T |
|
| Q |
225 |
tagttacaaagtttattggaatttttaccaatgtcatattgatccctttgtttgccacagtcacagaatcatag |
298 |
Q |
| |
|
|| |||| ||| | |||||||||| ||| ||||||| ||| ||||||| |||||| |||||||||||||| |
|
|
| T |
11994666 |
taattactaagatgtttggaattttaacccatgtcattttgttcccttttgacgccacaatcacagaatcatag |
11994593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 107 - 294
Target Start/End: Complemental strand, 32682306 - 32682113
Alignment:
| Q |
107 |
atggattgaggaataggaccagttagtctgttatgtgaaaggttaagccctttga------gtgcgtgaagttctcctatatcatttggaattcctccat |
200 |
Q |
| |
|
|||||||| |||||| || | || ||||||||||| ||||||||||||||| ||| |||| ||||| || || ||| |||||||||| |||| | |
|
|
| T |
32682306 |
atggattggggaatatgatcggtgagtctgttatgggaaaggttaagccctctgattctgagtgcatgaagctccccaatagcatttggaatctctcctt |
32682207 |
T |
|
| Q |
201 |
taaacttgtttcttgagaaatcaatagttacaaagtttattggaatttttaccaatgtcatattgatccctttgtttgccacagtcacagaatc |
294 |
Q |
| |
|
||| |||||||||| ||||||||| ||||||||||| |||||||||| || | |||||| ||| ||||||| | ||| |||||||||||| |
|
|
| T |
32682206 |
caaatctgtttcttgacaaatcaatacttacaaagtttcttggaattttcactagtgtcattttgctcccttttgtccccatagtcacagaatc |
32682113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 86; Significance: 4e-41; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 1 - 298
Target Start/End: Original strand, 8522703 - 8523000
Alignment:
| Q |
1 |
aagatccaagacttcaagactgttcaaattggttaattctgcaggaatcataccagtgagaatatttgtcgagagatccaatgattccaagtttgtcaag |
100 |
Q |
| |
|
|||||||||||||||||||||||| | |||||||||||| |||||||| | | || | ||||||| || |||||||| |||||||||| ||||||| |
|
|
| T |
8522703 |
aagatccaagacttcaagactgttaagattggttaattccaaaggaatcacatcggttaacatatttgaggaaagatccaaagattccaagtatgtcaag |
8522802 |
T |
|
| Q |
101 |
tttagtatggattgaggaataggaccagttagtctgttatgtgaaaggttaagccctttgagtgcgtgaagttctcctatatcatttggaattcctccat |
200 |
Q |
| |
|
||| |||||||| |||||| |||| || ||||||||||| ||||||||||||||| ||| ||| ||||| || || ||| |||||||| | || | |
|
|
| T |
8522803 |
tttcctatggatttgggaatatgacctgtaagtctgttatgggaaaggttaagccctatgattgcatgaagctcaccaataatctttggaatctcgcctt |
8522902 |
T |
|
| Q |
201 |
taaacttgtttcttgagaaatcaatagttacaaagtttattggaatttttaccaatgtcatattgatccctttgtttgccacagtcacagaatcatag |
298 |
Q |
| |
|
||| ||||||||||| ||||||||| |||||||||| |||||||||| || | | |||| ||| ||||||| | |||||| |||||||||||||| |
|
|
| T |
8522903 |
caaatttgtttcttgacaaatcaataattacaaagttgtttggaattttcactagtttcattttgttcccttttgtcgccacaatcacagaatcatag |
8523000 |
T |
|
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