View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18198_low_13 (Length: 305)
Name: NF18198_low_13
Description: NF18198
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18198_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 275; Significance: 1e-154; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 16 - 298
Target Start/End: Complemental strand, 34333689 - 34333407
Alignment:
| Q |
16 |
tccatcactattatttatcatcatatcagcactcctaagggagtacacctaaggatagacttcaataagagattcataggcaaataatggaaatattttg |
115 |
Q |
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| T |
34333689 |
tccatcactattatttatcatcatatcagcactcctaagggagtacacctaaggatagacttcaataagagattcataggaaaataatggaaatattttg |
34333590 |
T |
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| Q |
116 |
tagtctttgaaccctgcttcaatgaagaggtgcttccattctttttcagttctctcttttccaccatcaaatgccatcatacttatatccataatcagat |
215 |
Q |
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| T |
34333589 |
tagtctttgaaccctgcttcaatgaagaggtgcttccattctttttcagttctctcttttccaccatcaaatgccatcatacttatatccataatcagat |
34333490 |
T |
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| Q |
216 |
tttgttgagtaatatctttctcatcatccttttcatttattagtatatctataataatcacttttccttttctgcctttgctt |
298 |
Q |
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| T |
34333489 |
tttgttgagtaatatctttctcatcatccttttcatttattagtatatctataataatcacttttccttttctgcccttgctt |
34333407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 65 - 298
Target Start/End: Complemental strand, 34344673 - 34344443
Alignment:
| Q |
65 |
taaggatagacttcaataagagattcataggcaaataatggaaatattttgtagtctttgaaccctgcttcaatgaagaggtgcttccattctttttcag |
164 |
Q |
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| T |
34344673 |
taaggataagcttcaataagagatctaaagccaaataatggaaatattttatagtctttgaaccctgcttcaacgaagaggtgcttccattcttttccag |
34344574 |
T |
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| Q |
165 |
ttctctcttttccaccatcaaatgccatcatacttatatccataatcagattttgttgagtaatatctttctcatcatccttttcatttattagtatatc |
264 |
Q |
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| T |
34344573 |
ttctctctttt---ccattaatccccatcatgattaaatccaaacataactttgtttcagtcatatctttctcatcatcctcttcatttattattatatc |
34344477 |
T |
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| Q |
265 |
tataataatcacttttccttttctgcctttgctt |
298 |
Q |
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| T |
34344476 |
cataataatcacttttccttttttgccgttgctt |
34344443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 108 - 178
Target Start/End: Original strand, 4170653 - 4170723
Alignment:
| Q |
108 |
atattttgtagtctttgaaccctgcttcaatgaagaggtgcttccattctttttcagttctctcttttcca |
178 |
Q |
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| T |
4170653 |
atattttgtagttttcaaagcctgcttccatgaagagtttcttccattcttcctcatttctctcttttcca |
4170723 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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