View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18198_low_15 (Length: 281)
Name: NF18198_low_15
Description: NF18198
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18198_low_15 |
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Alignment Details
Target: chr5 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 13 - 263
Target Start/End: Complemental strand, 2622028 - 2621778
Alignment:
| Q |
13 |
aatatcagagaagaagaacgtactctatcccatagatgcgggtctggcttcttatatacgacaactttgtcaagagcagaaggattagccattttccatc |
112 |
Q |
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| T |
2622028 |
aatatcagagaagaagaacgtactctatcccatagatgcgggtctggcttcttatatacgacaactttgtcaagagcagaaggattagccattttccatc |
2621929 |
T |
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| Q |
113 |
ggcattccggatgaggaacacgatgtttttcatattcactcactgtctgttgtattgtagaattgaattttgcttttgaaaggtaaaacacaaaaggctt |
212 |
Q |
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| T |
2621928 |
ggcattccggatgaggaacacgatgtttttcatattcactcactgtctgttgtattgtagaattgaattttgcttttgaaaggtaaaacacaaaaggctt |
2621829 |
T |
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| Q |
213 |
ctgacaagggtgtcgagtaacaggacgtgtgttgaaagcataagcagtgta |
263 |
Q |
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| T |
2621828 |
ctgacaagggtgtcgagtaacaggacgtgtgttgaaagcataagcagtgta |
2621778 |
T |
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Back To:
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Target: chr8 (Bit Score: 87; Significance: 9e-42; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 33 - 263
Target Start/End: Original strand, 41316639 - 41316869
Alignment:
| Q |
33 |
tactctatcccatagatgcgggtctggcttcttatatacgacaactttgtcaagagcagaaggattagccattttccatcggcattccggatgaggaaca |
132 |
Q |
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| T |
41316639 |
tactctatcccatagatgtggatctggcttcttatatacctccactctgtcaacagaagaaggattggccatcttccaccggcattctgggtgaggaaca |
41316738 |
T |
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| Q |
133 |
cgatgtttttcatattcactcactgtctgttgtattgtagaattgaattttgcttttgaaaggtaaaacacaaaaggcttctgacaagggtgtcgagtaa |
232 |
Q |
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| T |
41316739 |
cgatgcctttcatattcagtcagtgtttgttctgttgtatcattgtattttgcctttgagaagtaaaatacaaaaggcttctgacatggatttcggctaa |
41316838 |
T |
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| Q |
233 |
caggacgtgtgttgaaagcataagcagtgta |
263 |
Q |
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| T |
41316839 |
ccggacgcgtgttgaatgcatatgcagtgta |
41316869 |
T |
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