View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18198_low_19 (Length: 253)
Name: NF18198_low_19
Description: NF18198
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18198_low_19 |
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Alignment Details
Target: chr8 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 11 - 235
Target Start/End: Original strand, 2365491 - 2365715
Alignment:
| Q |
11 |
atcatcatggtcatgggaagtttaagcatggaaaatttggcaaacatggaaaattcggcaagcatggaaaattcggcaagggatggaagtgatgcagagg |
110 |
Q |
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| T |
2365491 |
atcatcatggtcatgggaagtttaagcatgggaaatttggcaaacatggaaaattcggcaagcatggaaaattcggcaagggatggaagtgatgcagagg |
2365590 |
T |
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| Q |
111 |
cgaatatattaaatatgcaactttgagcatgatcatcaatgctgaatttttagatgaataatgtatgctaattttatcttgataataataatgtatgcta |
210 |
Q |
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| T |
2365591 |
cgaatatattaaatatccaactttgagcatgatcatcaatgctgaattattagatgaataatgtatgctaattttatcttgataataataatgtatgcta |
2365690 |
T |
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| Q |
211 |
attgttattagcaacatactaagtt |
235 |
Q |
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| T |
2365691 |
attgttattagcaacatactaagtt |
2365715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 70 - 183
Target Start/End: Original strand, 2369008 - 2369130
Alignment:
| Q |
70 |
aagcatggaaaattcggcaagggatggaagtgatgcagaggcgaatatattaa------atatgcaactttgagcatgatcatcaatgctgaatttttag |
163 |
Q |
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| T |
2369008 |
aagcatggaaaatttggcaaacgatggaagtgatacaggggcaaatatattaagtatatatatgcaactttgagcatgatcatggatgctaaatttttag |
2369107 |
T |
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| Q |
164 |
atgaata---atgtatgctaatt |
183 |
Q |
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| T |
2369108 |
attaataataatgtatgctaatt |
2369130 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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