View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18198_low_2 (Length: 606)
Name: NF18198_low_2
Description: NF18198
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18198_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 559; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 559; E-Value: 0
Query Start/End: Original strand, 1 - 583
Target Start/End: Original strand, 52823465 - 52824046
Alignment:
| Q |
1 |
gagaaagatataagagagagttgtgtgataaatatgatagggtgatgatttcataagagaaatagagataaaatttaaggagttcaaatatattatttaa |
100 |
Q |
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| T |
52823465 |
gagaaagatataagagagagttgtgtgataaatatgatagggtgatgatttcataagagaaatagagataaaatttaaggtgttcaaatatattatttaa |
52823564 |
T |
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| Q |
101 |
ttcaattatgtatatatttaacagtgggtcaccatcttcttcattgtttcttgtcttggatggttggttcagatatttattataagattcagagggaaat |
200 |
Q |
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| T |
52823565 |
ttcaattatgtatatatttaacagtgggtcaccatcttcttcattgtttcttgtcttggatggttggttcagatatttattataagattcagagggaaat |
52823664 |
T |
|
| Q |
201 |
aagtgaatgattcagtatcatacgtacatttgatattatgaagatccagtgcgacgtctgtaacaaacggcaggcttctttattttgcaccgccgatgaa |
300 |
Q |
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| T |
52823665 |
aagtgaatgattcagtatcatacgtacatttgatattatgaagatccagtgcgacgtctgtaacaaacggcaggcttctttattctgcaccgccgatgaa |
52823764 |
T |
|
| Q |
301 |
gctgccttatgctccacctgcgacccaccgtgtccaccatgctaacaaactcgcctccaaacaccgtcgcttctctctcgaccaccctaattctcccaac |
400 |
Q |
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| T |
52823765 |
gctgccttatgctccacctgcga-ccaccgtgtccaccatgctaacaaactcgcctccaaacaccgtcgcttctctctcgaccaccctaattctcccaac |
52823863 |
T |
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| Q |
401 |
catttccctctctgcgatatttgcctcgtaattctctccaatatttatgcatactaaacttgttatatatagaaagagactatatagtattaatttcatt |
500 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
52823864 |
catttccctctctgcgatatttgcctcgtaattctctccaatatttatgtatactaatcttgttatatatagaaagagactatatagtattaatttcatt |
52823963 |
T |
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| Q |
501 |
taactatatcaactcatgaatttattataataatgatacattggatttgtttctttgtttgtaggaaagaagaggttttgttt |
583 |
Q |
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| T |
52823964 |
taactatatcaactcatgaatttattataataatgatacattggatttgtttctttgtttgtaggaaagaagaggttttgttt |
52824046 |
T |
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