View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18198_low_7 (Length: 350)

Name: NF18198_low_7
Description: NF18198
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18198_low_7
NF18198_low_7
[»] chr6 (3 HSPs)
chr6 (23-238)||(12425656-12425873)
chr6 (94-143)||(32406993-32407042)
chr6 (242-279)||(12425923-12425960)
[»] chr5 (3 HSPs)
chr5 (63-140)||(6423993-6424070)
chr5 (94-171)||(42042143-42042220)
chr5 (88-144)||(33408169-33408225)
[»] chr8 (1 HSPs)
chr8 (94-159)||(30525261-30525326)
[»] chr4 (3 HSPs)
chr4 (71-172)||(36165839-36165940)
chr4 (101-159)||(54137261-54137319)
chr4 (107-169)||(582290-582352)
[»] chr7 (2 HSPs)
chr7 (82-142)||(8745849-8745909)
chr7 (54-140)||(36496221-36496307)
[»] chr3 (3 HSPs)
chr3 (82-167)||(12369762-12369847)
chr3 (100-141)||(20490964-20491005)
chr3 (108-172)||(22312323-22312387)
[»] chr2 (1 HSPs)
chr2 (124-172)||(36201980-36202028)
[»] chr1 (1 HSPs)
chr1 (86-146)||(13899937-13899997)


Alignment Details
Target: chr6 (Bit Score: 165; Significance: 3e-88; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 23 - 238
Target Start/End: Original strand, 12425656 - 12425873
Alignment:
Q  23 gggagtaaagttattggtcaggtttcgaagttgttcgatttataaatttgtttcagcaacctcatcatttaagctagtttttgtgatgagattcaatctc 122  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| |    
T  12425656 gggagtaaagttattggtcaggtttcgaagttgttcgatttataaatttgtttcagcagcctcatcatttaagctaatttttgtgatgagattcaatccc 12425755  T
Q  123 atttaacatggtatcagagtcgagttgagtattgcaaagtggaaattggaacctgaaaccaaaagac--nnnnnnnnnngtgtccagagttcaaacctca 220  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||            |||||||||||||||||||||    
T  12425756 atttaacatggtatcagagtcgagttgagtattgcaaagtggaaattggaacctgaaaccaaaagactgtttttttttggtgtccagagttcaaacctca 12425855  T
Q  221 atccttgcatatattatg 238  Q
    ||||||||||||||||||    
T  12425856 atccttgcatatattatg 12425873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 94 - 143
Target Start/End: Complemental strand, 32407042 - 32406993
Alignment:
Q  94 agctagtttttgtgatgagattcaatctcatttaacatggtatcagagtc 143  Q
    |||||| ||||| |||||||| ||| ||||||||||||||||||||||||    
T  32407042 agctagcttttgggatgagatccaaactcatttaacatggtatcagagtc 32406993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 242 - 279
Target Start/End: Original strand, 12425923 - 12425960
Alignment:
Q  242 gtttgtcggaggtataaatgtttttaacaaaggctttt 279  Q
    |||||| |||| ||||||||||||||||||||||||||    
T  12425923 gtttgtaggagctataaatgtttttaacaaaggctttt 12425960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 63 - 140
Target Start/End: Original strand, 6423993 - 6424070
Alignment:
Q  63 tataaatttgtttcagcaacctcatcatttaagctagtttttgtgatgagattcaatctcatttaacatggtatcaga 140  Q
    ||||||| ||||| || | | ||||| |||||||||||||||  ||||||||||||||| ||||||||||||||||||    
T  6423993 tataaatatgtttgagtatcatcatcttttaagctagtttttaggatgagattcaatcttatttaacatggtatcaga 6424070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 94 - 171
Target Start/End: Original strand, 42042143 - 42042220
Alignment:
Q  94 agctagtttttgtgatgagattcaatctcatttaacatggtatcagagtcgagttgagtattgcaaagtggaaattgg 171  Q
    |||||||||||| |||||||| ||| || |||||||||||||||||||||| ||| || ||||| | |||| ||||||    
T  42042143 agctagtttttgggatgagatccaaacttatttaacatggtatcagagtcgggttaaggattgcgatgtgggaattgg 42042220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 88 - 144
Target Start/End: Complemental strand, 33408225 - 33408169
Alignment:
Q  88 catttaagctagtttttgtgatgagattcaatctcatttaacatggtatcagagtcg 144  Q
    ||||| |||||  ||||| |||||||||||| |||||||||||||||||||||||||    
T  33408225 catttgagctaacttttgggatgagattcaaactcatttaacatggtatcagagtcg 33408169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 94 - 159
Target Start/End: Original strand, 30525261 - 30525326
Alignment:
Q  94 agctagtttttgtgatgagattcaatctcatttaacatggtatcagagtcgagttgagtattgcaa 159  Q
    |||||| ||||| |||||||| ||| | ||||||||||||||||||||||||||| || |||||||    
T  30525261 agctagcttttgggatgagatacaagcacatttaacatggtatcagagtcgagttaaggattgcaa 30525326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 71 - 172
Target Start/End: Complemental strand, 36165940 - 36165839
Alignment:
Q  71 tgtttcagcaacctcatcatttaagctagtttttgtgatgagattcaatctcatttaacatggtatcagagtcgagttgagtattgcaaagtggaaattg 170  Q
    ||||| |||| ||||||| |||||||||  ||||| |||||||| ||| ||||||||| |||||||| ||| || ||| || |||| || ||||||||||    
T  36165940 tgtttgagcaccctcatcctttaagctaacttttgcgatgagatccaaactcatttaatatggtatcggagccgggttaagaattgtaatgtggaaattg 36165841  T
Q  171 ga 172  Q
    ||    
T  36165840 ga 36165839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 101 - 159
Target Start/End: Complemental strand, 54137319 - 54137261
Alignment:
Q  101 ttttgtgatgagattcaatctcatttaacatggtatcagagtcgagttgagtattgcaa 159  Q
    ||||| |||||||||||| |||| |||||||||||||||||||| ||| || |||||||    
T  54137319 ttttgggatgagattcaagctcaattaacatggtatcagagtcgggttaaggattgcaa 54137261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 107 - 169
Target Start/End: Original strand, 582290 - 582352
Alignment:
Q  107 gatgagattcaatctcatttaacatggtatcagagtcgagttgagtattgcaaagtggaaatt 169  Q
    ||||||||||||  |||||||||||||||||||||||| ||| |  ||||||| |||| ||||    
T  582290 gatgagattcaagttcatttaacatggtatcagagtcgggtttaagattgcaatgtgggaatt 582352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 82 - 142
Target Start/End: Complemental strand, 8745909 - 8745849
Alignment:
Q  82 cctcatcatttaagctagtttttgtgatgagattcaatctcatttaacatggtatcagagt 142  Q
    ||||||| |||||||||  ||||| |||||||| ||| ||||||||||||| |||||||||    
T  8745909 cctcatcctttaagctaacttttgggatgagatccaagctcatttaacatgatatcagagt 8745849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 54 - 140
Target Start/End: Complemental strand, 36496307 - 36496221
Alignment:
Q  54 tgttcgatttataaatttgtttcagcaacctcatcatttaagctagtttttgtgatgagattcaatctcatttaacatggtatcaga 140  Q
    |||| ||| ||||||| |||||  ||| |||||||  || |||||| ||||| |||||||||||| | ||||| |||||||||||||    
T  36496307 tgttggatgtataaatctgtttaggcaccctcatccattgagctagcttttgggatgagattcaagcccatttcacatggtatcaga 36496221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 82 - 167
Target Start/End: Original strand, 12369762 - 12369847
Alignment:
Q  82 cctcatcatttaagctagtttttgtgatgagattcaatctcatttaacatggtatcagagtcgagttgagtattgcaaagtggaaa 167  Q
    ||||||||||| ||||| ||||||  ||||||||||| |||||| |||||| |||  |||| | ||| |  |||||||||||||||    
T  12369762 cctcatcatttgagctaatttttggaatgagattcaagctcattcaacatgatatttgagttgggttaacaattgcaaagtggaaa 12369847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 100 - 141
Target Start/End: Original strand, 20490964 - 20491005
Alignment:
Q  100 tttttgtgatgagattcaatctcatttaacatggtatcagag 141  Q
    |||||| |||||||| ||| ||||||||||||||||||||||    
T  20490964 tttttgggatgagatccaagctcatttaacatggtatcagag 20491005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 108 - 172
Target Start/End: Original strand, 22312323 - 22312387
Alignment:
Q  108 atgagattcaatctcatttaacatggtatcagagtcgagttgagtattgcaaagtggaaattgga 172  Q
    ||||||||||| |  |||||||||||||||||||||| ||| |  ||||||| ||| ||||||||    
T  22312323 atgagattcaaacctatttaacatggtatcagagtcgggttaaagattgcaatgtgcaaattgga 22312387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 124 - 172
Target Start/End: Original strand, 36201980 - 36202028
Alignment:
Q  124 tttaacatggtatcagagtcgagttgagtattgcaaagtggaaattgga 172  Q
    ||||||||||||||||||||| ||| || ||| ||| ||||||||||||    
T  36201980 tttaacatggtatcagagtcgggttaagaattacaatgtggaaattgga 36202028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 86 - 146
Target Start/End: Original strand, 13899937 - 13899997
Alignment:
Q  86 atcatttaagctagtttttgtgatgagattcaatctcatttaacatggtatcagagtcgag 146  Q
    ||||||| |||||  ||||  ||| |||||||||||||||||||||| ||||| |||||||    
T  13899937 atcatttgagctatcttttaggataagattcaatctcatttaacatgatatcaaagtcgag 13899997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University