View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18198_low_9 (Length: 324)

Name: NF18198_low_9
Description: NF18198
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18198_low_9
NF18198_low_9
[»] chr3 (6 HSPs)
chr3 (11-309)||(32772067-32772365)
chr3 (11-41)||(33447258-33447288)
chr3 (12-49)||(2119001-2119038)
chr3 (12-49)||(5577220-5577257)
chr3 (12-45)||(41282134-41282167)
chr3 (12-44)||(47530333-47530365)
[»] chr5 (2 HSPs)
chr5 (86-300)||(24401168-24401382)
chr5 (94-296)||(24409383-24409585)
[»] chr6 (1 HSPs)
chr6 (11-43)||(22517520-22517552)
[»] chr4 (3 HSPs)
chr4 (16-48)||(18962163-18962195)
chr4 (12-45)||(10045949-10045982)
chr4 (11-43)||(55318067-55318099)
[»] chr1 (6 HSPs)
chr1 (12-48)||(9058156-9058192)
chr1 (12-49)||(2371166-2371203)
chr1 (12-49)||(2371464-2371501)
chr1 (12-48)||(3263990-3264026)
chr1 (12-44)||(6182976-6183008)
chr1 (12-44)||(49695344-49695376)
[»] chr8 (1 HSPs)
chr8 (12-48)||(2321804-2321840)
[»] chr7 (2 HSPs)
chr7 (12-48)||(30699311-30699347)
chr7 (12-44)||(38445693-38445725)
[»] chr2 (2 HSPs)
chr2 (12-48)||(1466800-1466836)
chr2 (12-44)||(39642723-39642755)


Alignment Details
Target: chr3 (Bit Score: 283; Significance: 1e-158; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 11 - 309
Target Start/End: Original strand, 32772067 - 32772365
Alignment:
Q  11 cataggggaccaaaagtgcaattaagccaaaaattaaagtaaaaatagtataactgatttatatatggtgacatcagataatgagcaatggaaaatacaa 110  Q
    |||||||| ||||||||  |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32772067 catagggggccaaaagtataattaagccaaaaattaaagtagaaatagtataactgatttatatatggtgacatcagataatgagcaatggaaaatacaa 32772166  T
Q  111 ggctatattacacagaacaacagtgagcaaagatgcaacaagaatttcttggccagtgttcatagaaccgcaaccagagcaagaagttgggcctcaccca 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32772167 ggctatattacacagaacaacagtgagcaaagatgcaacaagaatttcttggccagtgttcatagaaccgcaaccagagcaagaagttgggcctcaccca 32772266  T
Q  211 aaactggttaaccaagacaacccaccaaaattcaagaccaagaaatacaaagattatgcatactgtaagctcaataagatccctcagtaagtgaaactg 309  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32772267 aaactggttaaccaagacaacccaccaaaattcaagaccaagaaatacaaagattatgcatactgtaagctcaataagatccctcagtaagtgaaactg 32772365  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 11 - 41
Target Start/End: Original strand, 33447258 - 33447288
Alignment:
Q  11 cataggggaccaaaagtgcaattaagccaaa 41  Q
    |||||||||||||||||||||||||||||||    
T  33447258 cataggggaccaaaagtgcaattaagccaaa 33447288  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 49
Target Start/End: Original strand, 2119001 - 2119038
Alignment:
Q  12 ataggggaccaaaagtgcaattaagccaaaaattaaag 49  Q
    ||||||| ||||||||||||||||||||||||| ||||    
T  2119001 ataggggtccaaaagtgcaattaagccaaaaatgaaag 2119038  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 49
Target Start/End: Original strand, 5577220 - 5577257
Alignment:
Q  12 ataggggaccaaaagtgcaattaagccaaaaattaaag 49  Q
    ||||||| ||||||||||||||||||||||||| ||||    
T  5577220 ataggggtccaaaagtgcaattaagccaaaaatcaaag 5577257  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 45
Target Start/End: Original strand, 41282134 - 41282167
Alignment:
Q  12 ataggggaccaaaagtgcaattaagccaaaaatt 45  Q
    ||||||| ||||||||||||||||||||||||||    
T  41282134 ataggggtccaaaagtgcaattaagccaaaaatt 41282167  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 44
Target Start/End: Complemental strand, 47530365 - 47530333
Alignment:
Q  12 ataggggaccaaaagtgcaattaagccaaaaat 44  Q
    ||||||| |||||||||||||||||||||||||    
T  47530365 ataggggtccaaaagtgcaattaagccaaaaat 47530333  T

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Target: chr5 (Bit Score: 79; Significance: 6e-37; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 86 - 300
Target Start/End: Original strand, 24401168 - 24401382
Alignment:
Q  86 agataatgagcaatggaaaatacaaggctatattacacagaacaacagtgagcaaagatgcaacaagaatttcttggccagtgttcatagaaccgcaacc 185  Q
    ||||| |||||||||||||||| |||||| |||| |||||||||||||||| ||||||||  |||||||| || ||||||||||||||||| ||  | ||    
T  24401168 agatactgagcaatggaaaatataaggctgtattgcacagaacaacagtgaacaaagatgagacaagaatgtcgtggccagtgttcatagagccaaagcc 24401267  T
Q  186 agagcaagaagttgggcctcacccaaaactggttaaccaagacaacccaccaaaattcaagaccaagaaatacaaagattatgcatactgtaagctcaat 285  Q
    ||| || ||| |||| ||||| |||||  ||||||||||||| || |||||||| |  |||||||||||||   | ||||||   || |||||||| |||    
T  24401268 agaacatgaaattggtcctcatccaaagttggttaaccaagagaatccaccaaagtataagaccaagaaatttgaggattatctttattgtaagcttaat 24401367  T
Q  286 aagatccctcagtaa 300  Q
    |||||||||||||||    
T  24401368 aagatccctcagtaa 24401382  T

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Target: chr5; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 94 - 296
Target Start/End: Original strand, 24409383 - 24409585
Alignment:
Q  94 agcaatggaaaatacaaggctatattacacagaacaacagtgagcaaagatgcaacaagaatttcttggccagtgttcatagaaccgcaaccagagcaag 193  Q
    |||||||| ||||| |||||| |||| ||||||||||| || | ||||||||  |||||||| || ||||||||||||||||||||  | |||||  | |    
T  24409383 agcaatgggaaatataaggctgtattgcacagaacaactgtaaacaaagatgagacaagaatgtcgtggccagtgttcatagaacccaagccagaaaacg 24409482  T
Q  194 aagttgggcctcacccaaaactggttaaccaagacaacccaccaaaattcaagaccaagaaatacaaagattatgcatactgtaagctcaataagatccc 293  Q
    ||||||| |||||||||||  | ||||||||||| || || ||||| | ||| ||||||||||| || |||||||| ||||||||||| |||||||||||    
T  24409483 aagttggtcctcacccaaagtttgttaaccaagagaatcctccaaagtacaaaaccaagaaatataaggattatgcttactgtaagcttaataagatccc 24409582  T
Q  294 tca 296  Q
    |||    
T  24409583 tca 24409585  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 43
Target Start/End: Original strand, 22517520 - 22517552
Alignment:
Q  11 cataggggaccaaaagtgcaattaagccaaaaa 43  Q
    |||||||||||||||||||||||||||||||||    
T  22517520 cataggggaccaaaagtgcaattaagccaaaaa 22517552  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 48
Target Start/End: Original strand, 18962163 - 18962195
Alignment:
Q  16 gggaccaaaagtgcaattaagccaaaaattaaa 48  Q
    |||||||||||||||||||||||||||||||||    
T  18962163 gggaccaaaagtgcaattaagccaaaaattaaa 18962195  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 45
Target Start/End: Complemental strand, 10045982 - 10045949
Alignment:
Q  12 ataggggaccaaaagtgcaattaagccaaaaatt 45  Q
    ||||||| ||||||||||||||||||||||||||    
T  10045982 ataggggtccaaaagtgcaattaagccaaaaatt 10045949  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 43
Target Start/End: Original strand, 55318067 - 55318099
Alignment:
Q  11 cataggggaccaaaagtgcaattaagccaaaaa 43  Q
    |||||||| ||||||||||||||||||||||||    
T  55318067 catagggggccaaaagtgcaattaagccaaaaa 55318099  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 48
Target Start/End: Complemental strand, 9058192 - 9058156
Alignment:
Q  12 ataggggaccaaaagtgcaattaagccaaaaattaaa 48  Q
    ||||||| |||||||||||||||||||||||||||||    
T  9058192 ataggggtccaaaagtgcaattaagccaaaaattaaa 9058156  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 49
Target Start/End: Complemental strand, 2371203 - 2371166
Alignment:
Q  12 ataggggaccaaaagtgcaattaagccaaaaattaaag 49  Q
    ||||||| ||||||||||||||||||||||||| ||||    
T  2371203 ataggggtccaaaagtgcaattaagccaaaaataaaag 2371166  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 49
Target Start/End: Original strand, 2371464 - 2371501
Alignment:
Q  12 ataggggaccaaaagtgcaattaagccaaaaattaaag 49  Q
    ||||||| ||||||||||||||||||||||||| ||||    
T  2371464 ataggggtccaaaagtgcaattaagccaaaaataaaag 2371501  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 48
Target Start/End: Complemental strand, 3264026 - 3263990
Alignment:
Q  12 ataggggaccaaaagtgcaattaagccaaaaattaaa 48  Q
    ||||||| |||||||||||||||||||||||| ||||    
T  3264026 ataggggtccaaaagtgcaattaagccaaaaaataaa 3263990  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 44
Target Start/End: Complemental strand, 6183008 - 6182976
Alignment:
Q  12 ataggggaccaaaagtgcaattaagccaaaaat 44  Q
    ||||||| |||||||||||||||||||||||||    
T  6183008 ataggggtccaaaagtgcaattaagccaaaaat 6182976  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 44
Target Start/End: Complemental strand, 49695376 - 49695344
Alignment:
Q  12 ataggggaccaaaagtgcaattaagccaaaaat 44  Q
    |||| ||||||||||||||||||||||||||||    
T  49695376 atagaggaccaaaagtgcaattaagccaaaaat 49695344  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 48
Target Start/End: Original strand, 2321804 - 2321840
Alignment:
Q  12 ataggggaccaaaagtgcaattaagccaaaaattaaa 48  Q
    ||||||| ||||||||||||||||||||| |||||||    
T  2321804 ataggggtccaaaagtgcaattaagccaataattaaa 2321840  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 48
Target Start/End: Original strand, 30699311 - 30699347
Alignment:
Q  12 ataggggaccaaaagtgcaattaagccaaaaattaaa 48  Q
    ||||||| |||||||||||||||||||||||| ||||    
T  30699311 ataggggtccaaaagtgcaattaagccaaaaactaaa 30699347  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 44
Target Start/End: Original strand, 38445693 - 38445725
Alignment:
Q  12 ataggggaccaaaagtgcaattaagccaaaaat 44  Q
    ||||||| |||||||||||||||||||||||||    
T  38445693 ataggggtccaaaagtgcaattaagccaaaaat 38445725  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 48
Target Start/End: Complemental strand, 1466836 - 1466800
Alignment:
Q  12 ataggggaccaaaagtgcaattaagccaaaaattaaa 48  Q
    ||||||| ||||||||||||||||||||| |||||||    
T  1466836 ataggggtccaaaagtgcaattaagccaataattaaa 1466800  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 44
Target Start/End: Complemental strand, 39642755 - 39642723
Alignment:
Q  12 ataggggaccaaaagtgcaattaagccaaaaat 44  Q
    ||||||| |||||||||||||||||||||||||    
T  39642755 ataggggtccaaaagtgcaattaagccaaaaat 39642723  T

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