View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18199_high_2 (Length: 810)
Name: NF18199_high_2
Description: NF18199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18199_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 731; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 731; E-Value: 0
Query Start/End: Original strand, 18 - 804
Target Start/End: Complemental strand, 4441906 - 4441122
Alignment:
| Q |
18 |
acttactctatataaatgatgaagcaaacttcaaataactaacataagactaatttaccttggttgttgaaccactcaacactaaatgttttgtccggga |
117 |
Q |
| |
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|||||||||||||| ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4441906 |
acttactctatatatatgataaagcaaacatcaaataactaacataagactaatttaccttggttgttgaaccactcaacactaaatgttttgtccggga |
4441807 |
T |
|
| Q |
118 |
gagagtgttgagcagcttgagtaatggatcgacaaaattatacgagaaaggaaagagatcaagacttgcttctaccacattgtgaaagctgttcatgctt |
217 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
4441806 |
gagagtgttgagcagcttgagtaatggatcgacaaaattatacgagaaaggaaagagatcaagacttgcttctaccacgttgtgaaagctgttcatgctt |
4441707 |
T |
|
| Q |
218 |
aaaacatcgatgaatttgtgttggtaaatgttaaggtactcaagatctggcgcatttatttcaagcgaagacccaaagtcattatcaatttggattttca |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4441706 |
aaaacatcgatgaatttgtgttggtaaatgttaaggtactcaagatctggtgcatttatttcaagcgaagacccaaagtcattatcaatttggattttca |
4441607 |
T |
|
| Q |
318 |
gccttttcaaggaagctgggaggcaaacattctccaagctatcagataaaaagttaaggtccaaagcttcgatgtttgggcagccatagaggagtgcatt |
417 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4441606 |
gccttttcaaggaagctgggaggcaaacattctccaagctatcagataaaaagtgaaggtccaaagcttcgatgtttgggcagccatagaggagtgcatt |
4441507 |
T |
|
| Q |
418 |
tacaaaagccacttccatgttacagaggacatcaattagcagcatcttcagcaatggtaaacttattggtgtagtgctttgcacgtctagatgaattcca |
517 |
Q |
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||||||||||||||||| ||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4441506 |
tacaaaagccacttccacgttaccgaggacatcaattagcagcatcttcagcgatggtaaacttattggtgtagtgctttgcacgtctagatgaattcca |
4441407 |
T |
|
| Q |
518 |
ccacaaatactgaggaacaaacaaataatgttatatcacatttcataactatttagcactgatacttaagattgaagtcatatacactttggtgtcggac |
617 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4441406 |
ccacaaatactgaggaacaaacaaataatgttatatcacatttcataactatttaggactgatacttaagattgaagtcatatacactttggtgtcggac |
4441307 |
T |
|
| Q |
618 |
aacaacacagacactaacatatttggttacattcaattgcttacatatttgcaaagtattatcaaggttgacagggcgtgtgtaagtgtttcatagattt |
717 |
Q |
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|||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4441306 |
aacaacac-gacactaacata-ttggttacattcaattgcttacatatttgcaaagtattatcaaggttgacagggcgtgtgtaagtgtttcatagattt |
4441209 |
T |
|
| Q |
718 |
aggagattaattgctccttaaaaatattcagatatttgcgatggatatcaatgaagaagtatccactgaagtcctaacctttgctac |
804 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4441208 |
aggagattaattgctccttaaaaatattcagatatttgcgatggatatcaatgaagaagtatccactgaagtcctaacctttgctac |
4441122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 244 - 282
Target Start/End: Original strand, 29585432 - 29585470
Alignment:
| Q |
244 |
aatgttaaggtactcaagatctggcgcatttatttcaag |
282 |
Q |
| |
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||||||||||||||||||||| ||||||||||||||||| |
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| T |
29585432 |
aatgttaaggtactcaagatcaggcgcatttatttcaag |
29585470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 180; Significance: 9e-97; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 180; E-Value: 9e-97
Query Start/End: Original strand, 18 - 590
Target Start/End: Original strand, 8382812 - 8383383
Alignment:
| Q |
18 |
acttactctatataaatgatgaagcaaacttcaaataactaacataagactaatttaccttggttgttgaaccactcaacactaaatgttttgtccggga |
117 |
Q |
| |
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|||||| | |||||||| |||||| |||| |||||||||||| |||| ||| | ||||||||||||||| ||||||| |||| |||||||| || ||| |
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| T |
8382812 |
acttacaccatataaattatgaagtaaacatcaaataactaaaataaaactta---accttggttgttgaatcactcaaaactagatgttttgccctgga |
8382908 |
T |
|
| Q |
118 |
gagagtgttgagcagcttgagtaatggatcgacaaaattatacgagaaaggaaagagatcaagacttgcttctaccacattgtgaaagctgttcatgctt |
217 |
Q |
| |
|
|||| ||||||| |||||||||||||| |||| |||| |||||||||||| | |||||| ||||||||||||| |||||||| ||| | |||||| || |
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|
| T |
8382909 |
gagattgttgaggagcttgagtaatgggacgacgaaatcatacgagaaaggcatgagatcgagacttgcttctataacattgtgcaagtttttcatgttt |
8383008 |
T |
|
| Q |
218 |
aaaacatcgatgaatttgtgttggtaaatgttaaggtactcaagatctggcgcatttatttcaagcgaagacccaaagtcatta---tcaatttggattt |
314 |
Q |
| |
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||||||||| |||| ||| |||||||||||| | |||||||||||||||||| |||||||||||||||| ||| | || ||| || ||| |||| |
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| T |
8383009 |
aaaacatcgctgaaactgtattggtaaatgtttatgtactcaagatctggcgcgtttatttcaagcgaaggcccgacctccttactctctattccaattt |
8383108 |
T |
|
| Q |
315 |
tcagccttttcaaggaagctgggaggcaaacattctccaagctatcagataaaaagttaaggtccaaagcttcgatgtttgggcagccatagaggagtgc |
414 |
Q |
| |
|
||||||||||||||| || ||| ||||||||||| |||||||||| | |||||| ||||| || | | |||||||||||||||||||| | || ||||| |
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|
| T |
8383109 |
tcagccttttcaaggtaggtggaaggcaaacattgtccaagctattggttaaaaatttaagatctagaacttcgatgtttgggcagccacatagaagtgc |
8383208 |
T |
|
| Q |
415 |
atttacaaaagccacttccatgttacagaggacatcaattagcagcatcttcagcaatggtaaacttattggtgtagtgctttgcacgtctagatgaatt |
514 |
Q |
| |
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||| || | || |||||||| | || || || ||||||||||| |||||||| ||||||||||||||| ||| |||||| | || |||||||||| |
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| T |
8383209 |
attcaccataggcacttccacataaccgaagatgtcaattagcagtatcttcagtgatggtaaacttattgtcgtaaagctttgtatgtttagatgaatt |
8383308 |
T |
|
| Q |
515 |
ccaccacaaatactgaggaacaaacaaataatgttatatcacatttcataactatttagcactgatacttaagatt |
590 |
Q |
| |
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|| |||| |||| ||||||||| ||| || |||||||||| |||||||||||||||||||||||| ||||||| |
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| T |
8383309 |
gcattgcaaagactgtggaacaaacgaattattttatatcaca-ttcataactatttagcactgatacataagatt |
8383383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 152; E-Value: 5e-80
Query Start/End: Original strand, 26 - 566
Target Start/End: Original strand, 8366821 - 8367361
Alignment:
| Q |
26 |
tatataaatgatgaagcaaacttcaaataactaacataagactaatttaccttggttgttgaaccactcaacactaaatgttttgtccgggagagagtgt |
125 |
Q |
| |
|
|||||||||||||||| |||| ||||||||| | |||| ||||| ||||||||||||||| | ||||| |||| ||||||||||| ||||||| ||| |
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|
| T |
8366821 |
tatataaatgatgaagtaaacaacaaataactgaaataaaactaa---accttggttgttgaaactctcaaaactagatgttttgtcctggagagattgt |
8366917 |
T |
|
| Q |
126 |
tgagcagcttgagtaatggatcgacaaaattatacgagaaaggaaagagatcaagacttgcttctaccacattgtgaaagctgttcatgcttaaaacatc |
225 |
Q |
| |
|
|||| |||||||||||||| ||||| |||| |||||| ||||| | || || ||||||||||||||| |||||||| ||| | |||||| |||| ||||| |
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| T |
8366918 |
tgaggagcttgagtaatgggtcgacgaaatcatacgacaaaggcacgaaataaagacttgcttctacaacattgtgcaagtttttcatgtttaatacatc |
8367017 |
T |
|
| Q |
226 |
gatgaatttgtgttggtaaatgttaaggtactcaagatctggcgcatttatttcaagcgaagacccaaagtcat---tatcaatttggattttcagcctt |
322 |
Q |
| |
|
| ||||| ||| |||||||||||| | |||||||||||||||||| |||||||||||| ||| || | |||| | || |||| |||||||||||| |
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|
| T |
8367018 |
gctgaatctgtattggtaaatgttgatgtactcaagatctggcgcgtttatttcaagcaaaggaccgacctcatcactctctatttcaattttcagcctt |
8367117 |
T |
|
| Q |
323 |
ttcaaggaagctgggaggcaaacattctccaagctatcagataaaaagttaaggtccaaagcttcgatgtttgggcagccatagaggagtgcatttacaa |
422 |
Q |
| |
|
||||||| || ||| ||| ||||||| |||||||||| | || ||| ||||| || | |||||||||||||||||||||| | || |||||||| || | |
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|
| T |
8367118 |
ttcaaggtaggtggaaggaaaacattgtccaagctattggttagaaatttaagatctagagcttcgatgtttgggcagccacatagaagtgcattcacca |
8367217 |
T |
|
| Q |
423 |
aagccacttccatgttacagaggacatcaattagcagcatcttcagcaatggtaaacttattggtgtagtgctttgcacgtctagatgaattccaccaca |
522 |
Q |
| |
|
|| | || || | || || || ||||||||||| |||||||| ||||||||||||||| |||| |||||| | || |||||||||| ||| || |
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|
| T |
8367218 |
tagggatttgcacataaccgaagatgtcaattagcagtatcttcagtgatggtaaacttattgtcgtagagctttgaatgtttagatgaatttcactacg |
8367317 |
T |
|
| Q |
523 |
aatactgaggaacaaacaaataatgttatatcacatttcataac |
566 |
Q |
| |
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||||||| | ||||||||||| || |||||| | |||||||||| |
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|
| T |
8367318 |
aatactgtgtaacaaacaaattatattatatgaaatttcataac |
8367361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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