View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18199_high_5 (Length: 439)
Name: NF18199_high_5
Description: NF18199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18199_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 411; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 1 - 424
Target Start/End: Complemental strand, 5952696 - 5952271
Alignment:
| Q |
1 |
aacaattttattgaatgaacaagaataggagagataactctactccgatgggtcttttccttcttcgtatacaattatctacaataatagctttgctttg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5952696 |
aacaattttattgaatgaacaagaataggagagataactctactccgatgggtcttttccttcttcgtatacaattatctacaataatagctttgctttg |
5952597 |
T |
|
| Q |
101 |
agtactaacatccacaacac--cctttgtgtttgttgcagaagatgggattctggactttgctagaagggttacttctctttgcaaatgcattggcgatt |
198 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5952596 |
agtactaacatccacaacacaccctttgtgtttgttgcagaagatgggattctggactttgctagaagggttacttctctttgcaaatgcattggcgatt |
5952497 |
T |
|
| Q |
199 |
ttgaacgaggaccgattccttgctcgacgaggatggacattagcagaaatgacaggacctagaaggaattctcttaaaggacaagtgataggactcattt |
298 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5952496 |
ttgaacgaggaccgattccttgctcgacgaggatggacactagcagaaatgacaggacctagaaggaattctcttaaaggacaagtgataggactcattt |
5952397 |
T |
|
| Q |
299 |
atgcctgtcaattcttgagacttccccttattctcttcaatattatcattatcatagtgaaactatttagtggttaatttgaagagagttatattcgatc |
398 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5952396 |
atgcctgtcaattcttgagacttccccttattctcttcaatattatcattatcatagtgaaactatttagtggttaatttgaagagagttatattcgatc |
5952297 |
T |
|
| Q |
399 |
tctgtcctctgttgtgtgttgtaaat |
424 |
Q |
| |
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|||||||||||||||||||||||||| |
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| T |
5952296 |
tctgtcctctgttgtgtgttgtaaat |
5952271 |
T |
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