View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18199_high_9 (Length: 285)
Name: NF18199_high_9
Description: NF18199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18199_high_9 |
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Alignment Details
Target: chr4 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 26 - 275
Target Start/End: Original strand, 3764604 - 3764852
Alignment:
| Q |
26 |
actcagtagttcgttctaataacatctctggctctcacttataatttgttgatggcactttattgttgagtgtcaagagttgagtaaaatgttcaatccc |
125 |
Q |
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| T |
3764604 |
actcagtagatcgttctaacaacatctctagctctcacttataatttgttgatggcactttattgttgagtgtcaagagttgagtaaa-tgttcaatccc |
3764702 |
T |
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| Q |
126 |
tgaaacttgttcttattcttttggaggcgatttcagatctaaaggttaattttaataagagtatggtggttggtgttaatgtgcttgcttcatggttggc |
225 |
Q |
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| T |
3764703 |
tgaaagttgttcttattcttttggaggcgatttcaggtctaaaggttaattttaataagagtatgttggttggtgttaatgtgcatgcttcatggttggc |
3764802 |
T |
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| Q |
226 |
agatgatgcttccgttttgaattgtaaaattggtcatattcaatttcttt |
275 |
Q |
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| T |
3764803 |
agatgatgcttccgttttgaattgtaaaattggtcatattcaatttcttt |
3764852 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 111 - 266
Target Start/End: Original strand, 23846984 - 23847139
Alignment:
| Q |
111 |
aaaatgttcaatccctgaaacttgttcttattcttttggaggcgatttcagatctaaaggttaattttaataagagtatggtggttggtgttaatgtgct |
210 |
Q |
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| T |
23846984 |
aaaatgtttgatccctgaaatttgttcttattctttttgaggtgattctaagcctaaaggttaattttaataagagtatgtgggttggtgataatgtggc |
23847083 |
T |
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| Q |
211 |
tgcttcatggttggcagatgatgcttccgttttgaattgtaaaattggtcatattc |
266 |
Q |
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| T |
23847084 |
agcttcttggttggctaaggctgcatctattttgaattgtaaaatgagtcatattc |
23847139 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 4e-16; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 171 - 254
Target Start/End: Complemental strand, 5367521 - 5367438
Alignment:
| Q |
171 |
ttaattttaataagagtatggtggttggtgttaatgtgcttgcttcatggttggcagatgatgcttccgttttgaattgtaaaa |
254 |
Q |
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| T |
5367521 |
ttaatttcaataagagtatgttggttagtgttaatgtggttgcttcttggtcggctaatgctgcttcagttttgaattgtaaaa |
5367438 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 183
Target Start/End: Complemental strand, 13218896 - 13218850
Alignment:
| Q |
137 |
cttattcttttggaggcgatttcagatctaaaggttaattttaataa |
183 |
Q |
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| T |
13218896 |
cttattcttttggaggcaatttcaggtttaaaggtaaattttaataa |
13218850 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 68 - 196
Target Start/End: Complemental strand, 4165912 - 4165785
Alignment:
| Q |
68 |
aatttgttgatggcactttattgttgagtgtcaagagttgagtaaaatgttcaatccctgaaacttgttcttattcttttggaggcgatttcagatctaa |
167 |
Q |
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| T |
4165912 |
aatttgttgacgacactttattgttgggagtcaagagttg-ggaaaatatttgttccctaaaagttgttcttattcttttcaaggccatttctggtctca |
4165814 |
T |
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| Q |
168 |
aggttaattttaataagagtatggtggtt |
196 |
Q |
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|||| |||| ||||| | |||| ||||| |
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| T |
4165813 |
aggtcgatttcaataaaaatatgttggtt |
4165785 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 112 - 207
Target Start/End: Complemental strand, 13448027 - 13447932
Alignment:
| Q |
112 |
aaatgttcaatccctgaaacttgttcttattcttttggaggcgatttcagatctaaaggttaattttaataagagtatggtggttggtgttaatgt |
207 |
Q |
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| T |
13448027 |
aaatgttagatccatgaaagttgttcttatctttttttaggcgatctcaggcctaaaggtcaattttaataaaagcatgttggtcggtgttaatgt |
13447932 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 170 - 208
Target Start/End: Complemental strand, 20754677 - 20754639
Alignment:
| Q |
170 |
gttaattttaataagagtatggtggttggtgttaatgtg |
208 |
Q |
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| T |
20754677 |
gttaatttcaataagagtatgttggttggtgttaatgtg |
20754639 |
T |
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