View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18199_low_11 (Length: 284)
Name: NF18199_low_11
Description: NF18199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18199_low_11 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 243; Significance: 1e-135; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 20 - 274
Target Start/End: Original strand, 27507326 - 27507580
Alignment:
| Q |
20 |
caaagaacaagtgtgtgctattcatgcgactttgataacgccttttaagcgttatttggaataacatgcacatcagatgatccagacgattataactttt |
119 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27507326 |
caaagaacaagtgtgtgctactcatgcgactttgataacgcctattaagagttatttggaataacatgcacatcagatgatccagacgattataactttt |
27507425 |
T |
|
| Q |
120 |
ttaggcattaacagagtgaaattaaaatattgttagagtgcacttgtagtgaaatgttaacattggacaatttcttttcaagagagaaataattgttttc |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27507426 |
ttaggcattaacagagtgaaattaaaatattgttagagtgcacttgtagtgaaatgttaacattggacaatttcttttcaagagagaaataattgttttc |
27507525 |
T |
|
| Q |
220 |
atttaatgaccgtcttacgattctatattgaacaattgtcatactggagcctttg |
274 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27507526 |
atttaatgaccgtcttacgattctatattgaacaattgtcatactggagcctttg |
27507580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 20 - 234
Target Start/End: Complemental strand, 27484790 - 27484577
Alignment:
| Q |
20 |
caaagaacaagtgtgtgctattcatgcgactttgataacgccttttaagcgttatttggaataacatgcacatcagatgatccagacgattataactttt |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||| |||||| |||| ||||||||| |||||||| ||||||||| ||| || |||||||||||| |
|
|
| T |
27484790 |
caaagaacaagtgtgtgctattcatgcgacttggataatgcctttgaagcattatttggagcaacatgcagatcagatgacccaaacaattataactttt |
27484691 |
T |
|
| Q |
120 |
ttaggcattaacagagtgaaattaaaatattgttagagtgcacttgtagtgaaatgttaacattggacaatttcttttcaagagagaaataattgttttc |
219 |
Q |
| |
|
||||||||||||||| |||||||||||| |||||||| |||| |||||||||||||||||||||||||| ||||||||||| |||||||| | | ||||| |
|
|
| T |
27484690 |
ttaggcattaacagactgaaattaaaatgttgttagattgcatttgtagtgaaatgttaacattggacagtttcttttcaaaagagaaattaat-ttttc |
27484592 |
T |
|
| Q |
220 |
atttaatgaccgtct |
234 |
Q |
| |
|
||| ||||| ||||| |
|
|
| T |
27484591 |
attcaatgatcgtct |
27484577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 20 - 206
Target Start/End: Original strand, 27502314 - 27502500
Alignment:
| Q |
20 |
caaagaacaagtgtgtgctattcatgcgactttgataacgccttttaagcgttatttggaataacatgcacatcagatgatccagacgattataactttt |
119 |
Q |
| |
|
|||||||||||||||| ||||||| |||| ||||||| | ||||| ||| |||||||||| |||||||| ||||||||| |||||||||||||||| || |
|
|
| T |
27502314 |
caaagaacaagtgtgtactattcaagcgattttgatatcacctttgaagtgttatttggagcaacatgcagatcagatgacccagacgattataactatt |
27502413 |
T |
|
| Q |
120 |
ttaggcattaacagagtgaaattaaaatattgttagagtgcacttgtagtgaaatgttaacattggacaatttcttttcaagagaga |
206 |
Q |
| |
|
||||||||||||||| |||||||||||| ||||||||| |||||||||||||||| |||||||| |||||||||||||||||||||| |
|
|
| T |
27502414 |
ttaggcattaacagactgaaattaaaattttgttagagagcacttgtagtgaaatcttaacattagacaatttcttttcaagagaga |
27502500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University