View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18199_low_12 (Length: 265)
Name: NF18199_low_12
Description: NF18199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18199_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 236; Significance: 1e-130; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 10 - 249
Target Start/End: Complemental strand, 31762848 - 31762609
Alignment:
| Q |
10 |
catcatcatatattaatattcatttcggccttaaaaactttaaacaggtataataaaagcaacatgcatatcatttctataaccaatggtaaaggtggat |
109 |
Q |
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| T |
31762848 |
catcatcatatattaatattcatttcggccttaaaaactttaaacaggtataataaaagcaacatgcatatcatttctataaccaatggtaaaggtggat |
31762749 |
T |
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| Q |
110 |
aaattaaaggttgtatacttacattcttaagcaatttttatagaattttttaggtcaataccaagcaggcgagcacatataagtagtaggtacattatga |
209 |
Q |
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| T |
31762748 |
aaattaaaggttgtatacttgcattcttaagcaatttttatagaattttttaggtcaataccaagcaggcgagcacatataagtagtaggtacattatga |
31762649 |
T |
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| Q |
210 |
cttgaaatattatataagttgacaactctaacaagtaaat |
249 |
Q |
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| T |
31762648 |
cttgaaatattatataagttgacaactctaacaagtaaat |
31762609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 168 - 249
Target Start/End: Complemental strand, 31769014 - 31768933
Alignment:
| Q |
168 |
taccaagcaggcgagcacatataagtagtaggtacattatgacttgaaatattatataagttgacaactctaacaagtaaat |
249 |
Q |
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|||||||||||| ||||||||||| |||||||||||||||||| ||||||| |||||||||||||||||||||||||||| |
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| T |
31769014 |
taccaagcaggcagccacatataagttgtaggtacattatgacttcaaatattttataagttgacaactctaacaagtaaat |
31768933 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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