View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18199_low_3 (Length: 701)
Name: NF18199_low_3
Description: NF18199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18199_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 456; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 456; E-Value: 0
Query Start/End: Original strand, 147 - 684
Target Start/End: Complemental strand, 51960467 - 51959930
Alignment:
| Q |
147 |
gcaacacttaagcaaatatacattaatgtagagtttcaaagggaaagagaattgagtctaatgtagtaagtaaatcgtcaagacccatgagcccaagaaa |
246 |
Q |
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| T |
51960467 |
gcaacacttaagcaaatatacattaatgtagagtttcaaagggaaagagaattgagtctaatgtagtaagtaaatcgtcaagacccatgagcccaagaaa |
51960368 |
T |
|
| Q |
247 |
aatatattttggctcaagtgacttagagactatgaatcctattagaccatgattcacctccttctagaaggatttagatagttccagtatgacaaatcat |
346 |
Q |
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| T |
51960367 |
aatatatttcggctcaagtgacttagagactatgaatcctattagaccatgcatcacctccttctagaaggatctagatagtttcagtatgacaaatcat |
51960268 |
T |
|
| Q |
347 |
tggttagtttcttagaatatatcaatgttataagtaaagtattag----tgcaatcgtcaccaagaatgaatatgaaaacgaaaatagttttaagataat |
442 |
Q |
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| T |
51960267 |
tgattagtttcttagaatatatcaatgttataagtaaagtattagtgaatgcaaccgtcaccaagaatgaatatgaaaacgaaaatagttttaagataat |
51960168 |
T |
|
| Q |
443 |
gtagtcctagttctagtctccttcattgtatttccttcttgtttgtaccacgaaaaagtggaatcttacataaacacttaaaaatatagtaatacttata |
542 |
Q |
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| T |
51960167 |
gtagtcctagtcatagtctccttcattgtatttccttcttatttgtaccacgaaaaagtggaatcttacataaacacttaaaaatacagtaatacttata |
51960068 |
T |
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| Q |
543 |
ctttcttctctctagtgagttgatcatttggcgtcagtcactctcgattacatagttgtaaggaaagtgtggcatctctagctatggtgctgatcgatca |
642 |
Q |
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| T |
51960067 |
ctttcttctctctagtgagtttatcatttggcgtcagtcactctcgattacatagttgtaaggaaagtgtggcatctctagctatggcgct----gatca |
51959972 |
T |
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| Q |
643 |
caaccgcattttacaatctagggggaagtgtgccgccacctt |
684 |
Q |
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| T |
51959971 |
caaccgcattttacaatctagggggaagtgtgccgccacctt |
51959930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 18 - 151
Target Start/End: Complemental strand, 51963683 - 51963550
Alignment:
| Q |
18 |
ccaacttactaacacactgtatttcactcacttcattaatagtgtctattgtgaaccacatataagatgctcaaatcacatgattgaatgaagctatgaa |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
51963683 |
ccaacttactaacacactgtatttcactcacttcattaatagtgtctattgtgaaccacatataagatgctcaaatcgcatgattgaatgaagctatgaa |
51963584 |
T |
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| Q |
118 |
ctggagctaagtgcacttttaattggttggcaac |
151 |
Q |
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| T |
51963583 |
ctcgagctaagtgcacttttaattggttggcaac |
51963550 |
T |
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Back To:
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