View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18199_low_4 (Length: 640)
Name: NF18199_low_4
Description: NF18199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18199_low_4 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 561; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 561; E-Value: 0
Query Start/End: Original strand, 17 - 630
Target Start/End: Original strand, 32741415 - 32742028
Alignment:
| Q |
17 |
caaaagcaaggccaaaataacgttgagaaccttcatggtgttgtgtgtctttgaaaatgaattggagatttagtaagcaagatgaatattgcactactat |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32741415 |
caaaagcaaggccaaaataacgttgagaaccttcatggtgttgtgtgtctttgaaaatgaattggagatttagtaagcaagatgaatattgcactactat |
32741514 |
T |
|
| Q |
117 |
aatatttaagcatctcatggggggatcgtgctatttatattaattggtttgcctaatattcttgagtnnnnnnntaaattgtgtgactcatgggttattt |
216 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||| ||||||| |
|
|
| T |
32741515 |
aatatttaagcatctcatgggggggtcgtgctatttatattaattggtttgcctaacattcttgagtaaaagaataaattgtgtgactcatgtgttattt |
32741614 |
T |
|
| Q |
217 |
tatttaacgatttaatgttgactagtgatcatttattaattaattaactgtcatattatattactacatgtgaaagaagaaaaacaaaaacatcaaattt |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32741615 |
tatttaacgatttaatgttgactagtgatcatttattaattaattaactgtcatattatattactacatgtgaaagaagaaaaacaaaaacatcaaattt |
32741714 |
T |
|
| Q |
317 |
gttttgaattggtcacatgatatatgattcctgctatggaaagtttttgacttgaatgcatggttttttaattttctttctcgcacttccttctaaccac |
416 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32741715 |
gttttgaattggttacatgatatatgattcctgctatggagagtctttgacttgaatgcatggttttttaattttctttctcgcacttccttctaaccac |
32741814 |
T |
|
| Q |
417 |
gtagcctaattgaatataacttttgaaaaggatatagatcaattatagttataaataaatattgattaaaatcaaaggacaaagtttactactttgctct |
516 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
32741815 |
gtagcctaattgaatataacttttgaaaaggatatagatcaattatagttataaataaatattgattaaaatcaaaggataaagtttactactttgctct |
32741914 |
T |
|
| Q |
517 |
tctttgattgagtctatgttttgtccggaaaaggaagtagatggtcgaatttgccaaatttcttggcactgcctttagggtatataattatttagcttag |
616 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32741915 |
tctttgattgagtctatgttttgtccggaaaaagaagtagatggtcgaatttgccaaatttcttggcactgcctttagggtatataattatttagcttag |
32742014 |
T |
|
| Q |
617 |
ggggatgatgatgt |
630 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
32742015 |
ggggatgatgatgt |
32742028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 17 - 621
Target Start/End: Original strand, 32738351 - 32738925
Alignment:
| Q |
17 |
caaaagcaaggccaaaataacgttgagaaccttcatggtgttgtgtgtctttgaaaatgaattggagatttagtaagcaagatgaatattgcactactat |
116 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| || |
|
|
| T |
32738351 |
caaaagcaaggccaaaataactttgagaaccttcatggtgttgtgtgtctttgaaaaagaattggagatttaataagcaaga---------ca------- |
32738434 |
T |
|
| Q |
117 |
aatatttaagcatctcatggggggatcgtgctatttatattaattggtttgcctaatattcttgagtnnnnnnntaaattgtgtgactcatgggttattt |
216 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||| | ||||| |||||||||| ||||| ||||||| ||||||| |
|
|
| T |
32738435 |
aatatttgagcatctcatggggggatcgtgctatttatattaattggtgtacctaacattcttgagtaaa-----aaatta----actcatgagttattt |
32738525 |
T |
|
| Q |
217 |
t-atttaacgatttaatgttgactagtgatcatttattaattaattaactgtcatattatattacta---catgtgaaagaagaaaaacaaaaacatcaa |
312 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||| |||| || || ||||||||||| ||| ||||||||| |||||||||| ||||| |
|
|
| T |
32738526 |
ttatttaacgatttaatgttgactagtgatcatttattaattaactaacggttatcttatattactattacatttgaaagaagcaaaacaaaaagatcaa |
32738625 |
T |
|
| Q |
313 |
atttgttttgaattggtcacatgatata-----tgattcctgctatggaaagtttttgacttgaatgcatggttttttaattttctttctcgcacttcct |
407 |
Q |
| |
|
|||||||||||||||||||||||||||| || | ||||||||| |||||||||||||||||||| | ||||| || || ||||| |
|
|
| T |
32738626 |
atttgttttgaattggtcacatgatataattcatgctatttgctatggagagtttttgacttgaatgcat-----------tctctttttctcatttcct |
32738714 |
T |
|
| Q |
408 |
tctaaccacgtagcctaattgaatataacttttgaaaaggatatagatcaattatagttataaataaat-attgattaaaatcaaa-ggacaaagtttac |
505 |
Q |
| |
|
||||| ||||||||||||||||||| | |||||||||||||||||||||||||||| ||||||||| ||| |||||||||||| ||||||||||||| |
|
|
| T |
32738715 |
tctaatcacgtagcctaattgaatagatcttttgaaaaggatatagatcaattata----taaataaattattaattaaaatcaaaaggacaaagtttac |
32738810 |
T |
|
| Q |
506 |
tactttgctcttctttgattgagtctatgttttgtccggaaaaggaagtagatggtcgaatttgccaaatttcttggcactgcctttagggtatataatt |
605 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| | |||||| |||| |||||||||||||||| ||||||||||| ||||||||||| || ||||||| |
|
|
| T |
32738811 |
tactttgctcttctttgattgagtctatgttttgactggaaaa-gaagcagatggtcgaatttgctaaatttcttggtactgcctttagtgtgtataatt |
32738909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University