View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18199_low_7 (Length: 380)
Name: NF18199_low_7
Description: NF18199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18199_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 317; Significance: 1e-179; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 13 - 366
Target Start/End: Complemental strand, 2919525 - 2919180
Alignment:
| Q |
13 |
cataggatattgaccaacataaccatgataaggcttcttagacacattgagtagcttggtttctaaagggagatcaaagagctcttgtagtgaagcaaat |
112 |
Q |
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| T |
2919525 |
cataggatattgaccaacataaccatgataaggcttcttagacacattgagtagcttggtttctaaagggagatcaaagagctcttgtagtgaagcaaat |
2919426 |
T |
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| Q |
113 |
atggctttgcgaaggtctaaaggaactttatcaaaaactgcttcaaagcaaccatactctactaatgccttatagacttgggacttcactaactcccaat |
212 |
Q |
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| T |
2919425 |
atggctttgcgaaggtctaaaggaactttatcaaaaactgcttcaaagcaaccatactctactaatgccttatagacttgggacttcactaactcccaat |
2919326 |
T |
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| Q |
213 |
taggactcttggcttccaagttgaggttattgaagtcaattattggaagctttggggtggcttctgtgcccatattttcaattttccttccctaattccc |
312 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2919325 |
taggactcttggcttccaagttgaggttattgaagtcaattattggaagctttggggtggcttctgtgcccatattttcaattttccttccct------- |
2919233 |
T |
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| Q |
313 |
taatttgattaagggtaatgcctagtataagctaggattgaaccttgtgattga |
366 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||| |||| |
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| T |
2919232 |
-aatttgattaagggtaatgcttagtataagctaggattgaaccttgtgcttga |
2919180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 16 - 366
Target Start/End: Complemental strand, 2934312 - 2933970
Alignment:
| Q |
16 |
aggatattgaccaacataaccatgataaggcttcttagacacattgagtagcttggtttctaaagggagatcaaagagctcttgtagtgaagcaaatatg |
115 |
Q |
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|||||||||||||| ||| |||| ||||||||| |||||||||||||||||||| || ||||||||||||||||||||||||| || ||||| ||||||| |
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| T |
2934312 |
aggatattgaccaatatagccatcataaggcttattagacacattgagtagcttagtctctaaagggagatcaaagagctcttctattgaagtaaatatg |
2934213 |
T |
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| Q |
116 |
gctttgcgaaggtctaaaggaactttatcaaaaactgcttcaaagcaaccatactctactaatgccttatagacttgggacttcactaactcccaattag |
215 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
2934212 |
gctttgcgaaggtctaaaggaactttatcaaaaattgcttcaaagcaaccatactctactaatgccttatagacttgggacttcactaactcccaattgg |
2934113 |
T |
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| Q |
216 |
gactcttggcttccaagttgaggttattgaagtcaattattggaagctttggggtggcttctgtgcccatattttcaattttccttccctaattccctaa |
315 |
Q |
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|| | |||||||| ||||||||||||||||||||||||| |||||||||| | ||| ||||| |||||||||||| | |||||||| ||| |
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| T |
2934112 |
gatttttggcttcaaagttgaggttattgaagtcaattagtggaagcttttgagtgtgttctgatcccatattttcacctgtccttccc--------taa |
2934021 |
T |
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| Q |
316 |
tttgattaagggtaatgcctagtataagctaggattgaaccttgtgattga |
366 |
Q |
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| T |
2934020 |
tatgattaagggtaatgcttagtataagctaggattgaaccttgtgattga |
2933970 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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