View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18199_low_8 (Length: 351)
Name: NF18199_low_8
Description: NF18199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18199_low_8 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 90; Significance: 2e-43; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 212 - 336
Target Start/End: Original strand, 781270 - 781392
Alignment:
| Q |
212 |
cccttaattaatttgcttatatcttgattttatgttttgcagcatcctaacatggacttctctggtgcaaaattatgttagaaagttagaatggtgctat |
311 |
Q |
| |
|
|||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||| |
|
|
| T |
781270 |
cccttacttaatttgcttac--cttgattttatgttttgcagcatcctaacatggacttctctggtgcaaaattatcttagaaagttagaatgatgctat |
781367 |
T |
|
| Q |
312 |
cctcggtgttggtgctgaaagtatt |
336 |
Q |
| |
|
|||| ||||||||||||||||||| |
|
|
| T |
781368 |
cctcaatgttggtgctgaaagtatt |
781392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 13 - 126
Target Start/End: Original strand, 781063 - 781183
Alignment:
| Q |
13 |
gaaatgatgaaaaaatttatgagtcaggtaagcc---tttgccatctattgacgtaaa----catttgtgagattgtttcggagagtttatggaaacagc |
105 |
Q |
| |
|
||||||||||| |||||||||||||||||||||| |||||||||||| ||| || | ||||||||||||||||| |||||| ||||||||||||| |
|
|
| T |
781063 |
gaaatgatgaagaaatttatgagtcaggtaagccgcatttgccatctatcgacatatataagcatttgtgagattgttttggagagcttatggaaacagc |
781162 |
T |
|
| Q |
106 |
ttgtaacatatgtataaattg |
126 |
Q |
| |
|
|| |||||||||||||||||| |
|
|
| T |
781163 |
ttctaacatatgtataaattg |
781183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 238 - 282
Target Start/End: Complemental strand, 769913 - 769869
Alignment:
| Q |
238 |
attttatgttttgcagcatcctaacatggacttctctggtgcaaa |
282 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
769913 |
attttatgttttgcagcatcctaacatggacttctcgggtgcaaa |
769869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 53 - 107
Target Start/End: Complemental strand, 37734124 - 37734070
Alignment:
| Q |
53 |
atctattgacgtaaacatttgtgagattgtttcggagagtttatggaaacagctt |
107 |
Q |
| |
|
||||| ||| |||||||||||||| ||||||| |||||||||||||||| ||||| |
|
|
| T |
37734124 |
atctactgatgtaaacatttgtgaaattgttttggagagtttatggaaatagctt |
37734070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 53 - 107
Target Start/End: Complemental strand, 19305052 - 19304998
Alignment:
| Q |
53 |
atctattgacgtaaacatttgtgagattgtttcggagagtttatggaaacagctt |
107 |
Q |
| |
|
|||||||||| ||| ||||||||||||||| | ||||| ||| |||||||||||| |
|
|
| T |
19305052 |
atctattgacataagcatttgtgagattgtgtgggagaatttgtggaaacagctt |
19304998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 71 - 114
Target Start/End: Complemental strand, 11415262 - 11415219
Alignment:
| Q |
71 |
ttgtgagattgtttcggagagtttatggaaacagcttgtaacat |
114 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||| |||||| |
|
|
| T |
11415262 |
ttgtgagattgttttagagagtttatggaaacagcttataacat |
11415219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 53 - 103
Target Start/End: Complemental strand, 43115182 - 43115132
Alignment:
| Q |
53 |
atctattgacgtaaacatttgtgagattgtttcggagagtttatggaaaca |
103 |
Q |
| |
|
|||||||||| ||| || |||||||||||||| | |||||||||||||||| |
|
|
| T |
43115182 |
atctattgacataatcacttgtgagattgtttggaagagtttatggaaaca |
43115132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University