View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18199_low_9 (Length: 307)
Name: NF18199_low_9
Description: NF18199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18199_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 13 - 291
Target Start/End: Complemental strand, 3923345 - 3923067
Alignment:
| Q |
13 |
tcatcaagagatcattggccaccaagcattggtgttttggaacttggaatcttaaaagcaactaatttgatgccaatgaagattggggggagaaccgatg |
112 |
Q |
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| T |
3923345 |
tcatcaagagatcattggccaccaagcattggtgttttggaacttggaatcttaaaagcaactaatttgatgccaatgaagattggggggagaaccgatg |
3923246 |
T |
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| Q |
113 |
catattgtgtggcgaaatatggaccaaaatgggtaaggacaagaaccagtgttgacagccgtgaaccaagatggaatgagcaatatgtttgggaagttta |
212 |
Q |
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| T |
3923245 |
catattgtgtggcgaaatatggaccaaaatgggtaaggacaagaacaagtgttgacagccgtgaaccaagatggaatgagcaatatgtttgggaagttta |
3923146 |
T |
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| Q |
213 |
tgagccattcacagtcattactattggagtttttgataacaatcagttagatcctgaaagtagagccagaggtgcaaga |
291 |
Q |
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| T |
3923145 |
tgagccattcacagtcattactattggagtttttgataacaatcagttagatcctgaaagtagagccagaggtgcaaga |
3923067 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 104 - 215
Target Start/End: Complemental strand, 27253757 - 27253646
Alignment:
| Q |
104 |
gaaccgatgcatattgtgtggcgaaatatggaccaaaatgggtaaggacaagaaccagtgttgacagccgtgaaccaagatggaatgagcaatatgtttg |
203 |
Q |
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||||||| ||||||||||| || || ||||| | |||||||| || ||||| || | |||||| || | | |||||| ||||||||||||||| ||| |
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| T |
27253757 |
gaaccgacgcatattgtgtagctaagtatggttctaaatgggtgagaacaaggactattgttgatagtctttcaccaaggtggaatgagcaatatacttg |
27253658 |
T |
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| Q |
204 |
ggaagtttatga |
215 |
Q |
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| T |
27253657 |
ggaagtttatga |
27253646 |
T |
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