View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18200_high_17 (Length: 353)
Name: NF18200_high_17
Description: NF18200
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18200_high_17 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 8 - 347
Target Start/End: Original strand, 47043060 - 47043401
Alignment:
| Q |
8 |
catcatcattgaattaattagacaaatgatttttcattannnnnnnaaaggcatttgctttattatgctttctgttttaaacaaaaccaaagtgagacca |
107 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47043060 |
catcatcattggattaattagacaaatgatttttcattatttttttaaaggcatttgctttattatgctttctgttttaaacaaaaccaaagtgagacca |
47043159 |
T |
|
| Q |
108 |
taatattgagcaattttagaataagag--aatacttcaaattttgatttcatttaaattaatatgatagtaaatagttaccttcgatgccaaaattttga |
205 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| |
|
|
| T |
47043160 |
taatattgagcaattttagaataagagagaatacttcaaattttgatttcatttaaattaatatgatagtaaatagtgaccttcgatgccaacattttga |
47043259 |
T |
|
| Q |
206 |
tttcacaagtttcatatcattaaaggcatgccactgttttttctatttatttgtctgcatgcacctggttagctccaccgccacgactctccatggtcac |
305 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47043260 |
tttcacaagtttcatatcattaaaggcatgccactgtattttctatttatttgtctgcatgcacctggttagctccaccgccacgactctccatggtcac |
47043359 |
T |
|
| Q |
306 |
attacaattaacatacgtctccttttggctccctgatgatgt |
347 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
47043360 |
attacaattaacatacgtctccttttggctccctgaagatgt |
47043401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University