View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18200_high_2 (Length: 679)
Name: NF18200_high_2
Description: NF18200
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18200_high_2 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 575; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 575; E-Value: 0
Query Start/End: Original strand, 15 - 660
Target Start/End: Original strand, 49271451 - 49272085
Alignment:
| Q |
15 |
atcatggggtgtgtttgttcaagaggtagaagatgttggttttctagctttgcctatgattagtgtaactttgtcacaatattttctacaaattatttca |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49271451 |
atcatggggtgtgtttgttcaagaggtagaagatgttggttttctagctttgcctatgattagtgtaactttgtcacaatattttctacaaattatttca |
49271550 |
T |
|
| Q |
115 |
atgatgatggttggtcatttgggtaaagttgctctttctaccacagctattgctatctctctctatggtgtctctggcttcagtcttcttgtaagtcttc |
214 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49271551 |
atgatgatggttggtcatttgggtaaacttgctctttctaccacagctattgctatctctctctatggtgtctctggcttcagtcttcttgtaagtcttc |
49271650 |
T |
|
| Q |
215 |
ttttcccttattatgtctagttaaaaaatatatatttcagaaatgaaagtaaaatttatgtcctgttggtcaattctatttgtcgagagtcttatcaact |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
49271651 |
ttttcccttattatgtctagttaaaaaatatatatttcagaaat-----------ttatgtcctgttggtcaactctatttgtcgagagtcttatcaact |
49271739 |
T |
|
| Q |
315 |
actgaacgactctcggctcaccnnnnnnngaagaataatggctctcgataaataaagtgtgacctatatgacataagttttagattttatggaaataaat |
414 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49271740 |
actgaacgactctcggctcaccaaaaaaagaagaataatggctctcgataaataaagtgtgacctatatgacataagttttagattttatggaaataaat |
49271839 |
T |
|
| Q |
415 |
ttaacttttttaaacctctggcacaaccgtcttctcattctaaactttcttgttgaacttccctttaccaagattgaaacttatgtctcttccaaagcat |
514 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
49271840 |
ttaacttttttaaacctctggcacaaccgtcttctcattctaaactttcttgttgaacttcccttaaccaagattgaaacttatgtctcttccaaagcat |
49271939 |
T |
|
| Q |
515 |
tatatagtcatgtcctccatttgtcaaggaaaattcattttcaagtgaatatggtactttgcctttgaatttgtgtccatcagttaactttgtctctgaa |
614 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49271940 |
tatatagtcatgtcctccatttgtcaaggaaaattcattttcaagtgaatatggtactttgcctttgaatttgtgtccatcagttaactttgtctctgaa |
49272039 |
T |
|
| Q |
615 |
ttttttaaaatagataaatggtctctcaattgtttcatgtccatca |
660 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49272040 |
ttttttaaaatagataaatggtctctcaattgtttcatgtccatca |
49272085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 156; E-Value: 2e-82
Query Start/End: Original strand, 17 - 216
Target Start/End: Original strand, 49254785 - 49254984
Alignment:
| Q |
17 |
catggggtgtgtttgttcaagaggtagaagatgttggttttctagctttgcctatgattagtgtaactttgtcacaatattttctacaaattatttcaat |
116 |
Q |
| |
|
|||||||||| ||| |||||||||| |||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49254785 |
catggggtgtattttttcaagaggtgaaagatgtttgttttctagcattgcctatgattagtgtaactttgtcacaatattttctacaaattatttcaat |
49254884 |
T |
|
| Q |
117 |
gatgatggttggtcatttgggtaaagttgctctttctaccacagctattgctatctctctctatggtgtctctggcttcagtcttcttgtaagtcttctt |
216 |
Q |
| |
|
||||||||||||||||||||||||| || ||||||||| ||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||| |
|
|
| T |
49254885 |
gatgatggttggtcatttgggtaaactttctctttctagcacagctattgctatctctctctgtgttgtctctggcttcagtcttcttgtaagtcttctt |
49254984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 17 - 210
Target Start/End: Original strand, 49267047 - 49267240
Alignment:
| Q |
17 |
catggggtgtgtttgttcaagaggtagaagatgttggttttctagctttgcctatgattagtgtaactttgtcacaatattttctacaaattatttcaat |
116 |
Q |
| |
|
|||||||||| ||| |||||||||| |||||||| ||||||||||| |||||||||| || ||| ||||||||||||||||||||||||||||||| |
|
|
| T |
49267047 |
catggggtgtattttttcaagaggtgaaagatgtttgttttctagctctgcctatgatcgccgtcactctgtcacaatattttctacaaattatttcaat |
49267146 |
T |
|
| Q |
117 |
gatgatggttggtcatttgggtaaagttgctctttctaccacagctattgctatctctctctatggtgtctctggcttcagtcttcttgtaagt |
210 |
Q |
| |
|
||| |||||||||| |||||||||| |||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
49267147 |
gataatggttggtcgtttgggtaaacttgctctttctagcacagctattgctatctctctctgtggtgtctctggcttcagtcttcttgtaagt |
49267240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 47 - 197
Target Start/End: Complemental strand, 49274761 - 49274607
Alignment:
| Q |
47 |
atgttggttttctagctttgcctatgattagtgtaactttgtcacaatattttctacaaattatttcaatgatgatggttggtcatttgggtaaagttgc |
146 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | |
|
|
| T |
49274761 |
atgttggttttctagctttgcctatgactagtgtaactttgtcacaatattttctacaaattatttcaatgatgatggttggtcatttgggtaaactttc |
49274662 |
T |
|
| Q |
147 |
tctttctaccacagctat----tgctatctctctctatggtgtctctggcttcag |
197 |
Q |
| |
|
|||||||| ||||||||| |||||||||||| | || ||||||||||||||| |
|
|
| T |
49274661 |
tctttctagcacagctattgcttgctatctctctttgtgctgtctctggcttcag |
49274607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University