View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18200_high_22 (Length: 321)

Name: NF18200_high_22
Description: NF18200
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18200_high_22
NF18200_high_22
[»] chr1 (22 HSPs)
chr1 (9-319)||(39395714-39396020)
chr1 (196-272)||(10324937-10325013)
chr1 (196-273)||(1514353-1514430)
chr1 (183-256)||(43018461-43018534)
chr1 (196-252)||(3515828-3515884)
chr1 (185-248)||(33693020-33693083)
chr1 (213-275)||(3416107-3416169)
chr1 (181-253)||(6574176-6574248)
chr1 (233-273)||(27500332-27500372)
chr1 (196-252)||(32370050-32370106)
chr1 (196-239)||(37522942-37522985)
chr1 (233-272)||(52263646-52263685)
chr1 (190-268)||(4554912-4554989)
chr1 (196-250)||(28083909-28083963)
chr1 (216-273)||(213535-213592)
chr1 (196-272)||(48549013-48549087)
chr1 (183-256)||(52013493-52013566)
chr1 (196-272)||(6041485-6041560)
chr1 (216-256)||(17284126-17284166)
chr1 (196-256)||(20026179-20026239)
chr1 (164-256)||(28287351-28287442)
chr1 (196-252)||(44801595-44801651)
[»] chr6 (11 HSPs)
chr6 (181-256)||(30926793-30926868)
chr6 (196-272)||(1485145-1485221)
chr6 (181-272)||(31305846-31305937)
chr6 (196-273)||(852542-852619)
chr6 (196-256)||(34898705-34898766)
chr6 (190-273)||(9505774-9505857)
chr6 (196-253)||(2234525-2234582)
chr6 (199-256)||(10874507-10874564)
chr6 (216-253)||(34027435-34027472)
chr6 (199-256)||(34063325-34063382)
chr6 (183-255)||(25388075-25388146)
[»] chr8 (9 HSPs)
chr8 (190-256)||(4336640-4336706)
chr8 (194-273)||(16972062-16972141)
chr8 (213-252)||(5893234-5893273)
chr8 (194-272)||(30098918-30098994)
chr8 (207-257)||(3206078-3206128)
chr8 (194-272)||(13384653-13384731)
chr8 (194-272)||(26100145-26100223)
chr8 (213-273)||(32736489-32736549)
chr8 (216-272)||(34478193-34478249)
[»] chr2 (11 HSPs)
chr2 (178-272)||(44439246-44439340)
chr2 (197-273)||(13912798-13912874)
chr2 (190-273)||(33961979-33962062)
chr2 (181-256)||(3476444-3476519)
chr2 (181-272)||(33502847-33502938)
chr2 (196-257)||(10618955-10619016)
chr2 (196-253)||(42982554-42982611)
chr2 (184-246)||(7630191-7630253)
chr2 (181-256)||(7629866-7629939)
chr2 (180-256)||(36374311-36374386)
chr2 (216-272)||(42741007-42741063)
[»] chr7 (5 HSPs)
chr7 (196-257)||(30182310-30182371)
chr7 (196-273)||(38123664-38123741)
chr7 (196-273)||(40561756-40561833)
chr7 (196-253)||(27571872-27571929)
chr7 (221-253)||(22310477-22310509)
[»] chr4 (13 HSPs)
chr4 (196-273)||(33843987-33844064)
chr4 (205-272)||(4243406-4243473)
chr4 (185-272)||(10185193-10185280)
chr4 (183-252)||(2206362-2206431)
chr4 (181-273)||(32818368-32818459)
chr4 (205-257)||(33843702-33843754)
chr4 (196-256)||(37439155-37439215)
chr4 (196-228)||(48045744-48045776)
chr4 (190-241)||(8330120-8330171)
chr4 (213-272)||(47596300-47596359)
chr4 (216-273)||(41751270-41751327)
chr4 (196-272)||(9064241-9064317)
chr4 (199-251)||(20712664-20712715)
[»] chr3 (16 HSPs)
chr3 (194-256)||(30301013-30301076)
chr3 (196-273)||(27266792-27266869)
chr3 (196-273)||(35264409-35264486)
chr3 (196-272)||(3776532-3776608)
chr3 (183-247)||(44489235-44489299)
chr3 (199-238)||(829906-829945)
chr3 (194-273)||(36302191-36302270)
chr3 (211-272)||(46853533-46853594)
chr3 (201-256)||(44958621-44958676)
chr3 (181-243)||(20484020-20484082)
chr3 (206-256)||(23187865-23187915)
chr3 (200-269)||(35058375-35058445)
chr3 (219-256)||(37703132-37703169)
chr3 (196-255)||(3845129-3845189)
chr3 (196-256)||(25359589-25359649)
chr3 (198-266)||(38332559-38332627)
[»] chr5 (12 HSPs)
chr5 (181-273)||(33608499-33608591)
chr5 (182-231)||(42724403-42724452)
chr5 (168-252)||(3043040-3043124)
chr5 (190-269)||(37877062-37877141)
chr5 (181-273)||(10898718-10898808)
chr5 (183-252)||(11132804-11132873)
chr5 (196-257)||(24306110-24306171)
chr5 (196-257)||(24367145-24367206)
chr5 (196-273)||(36639947-36640024)
chr5 (181-273)||(10859836-10859928)
chr5 (238-302)||(14299850-14299913)
chr5 (246-302)||(29922956-29923011)
[»] scaffold0283 (1 HSPs)
scaffold0283 (182-231)||(18377-18426)
[»] scaffold0361 (1 HSPs)
scaffold0361 (221-253)||(14132-14164)


Alignment Details
Target: chr1 (Bit Score: 269; Significance: 1e-150; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 9 - 319
Target Start/End: Original strand, 39395714 - 39396020
Alignment:
Q  9 atcagagacagagtggaaggtaccctctccgctcaccgtaacgaacttgtttcccttctctccaggttggttttatttccttcttctttgtcaaccgcgc 108  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||    
T  39395714 atcagagacagagtggaaggtaccctctccgctcaccgtaacgaacttgtttcccttctctccaggttggttttatttccttc---tttgtcaaccgcgc 39395810  T
Q  109 tattcattcgtataatcatttatcttcttcatcaagttaacctgagattcaaaatgttggttgctttagagaagaattgaatctaatttgaagctagaaa 208  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||    
T  39395811 tattcattcgtataatcatgtatcttcttcatcaagttaacctgagattcaaaatgttggttgctttagagaagaattgaatctaatttgaatctaaaaa 39395910  T
Q  209 ttggagttttttattctagaattaatttttacactcaaatttattgtttgactcatttttacatggaatgaatatatccaaatataaattacttttgcct 308  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||| |||    
T  39395911 ttggagttttttattctagaattaatttttacactcaaatttattgttcgactcatttttacatggaatgaatatatccaaatataaattac-tttacct 39396009  T
Q  309 tcaactccctt 319  Q
    |||||||||||    
T  39396010 tcaactccctt 39396020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 196 - 272
Target Start/End: Complemental strand, 10325013 - 10324937
Alignment:
Q  196 ttgaagctagaaattggagttttttattctagaattaatttttacactcaaatttattgtttgactcatttttacat 272  Q
    |||||| ||||||||| || |||| |||||| |||| ||||||||||||||||||||||||  ||||| ||||||||    
T  10325013 ttgaagatagaaattgtagcttttgattctataattgatttttacactcaaatttattgttatactcacttttacat 10324937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 196 - 273
Target Start/End: Original strand, 1514353 - 1514430
Alignment:
Q  196 ttgaagctagaaattggagttttttattctagaattaatttttacactcaaatttattgtttgactcatttttacatg 273  Q
    |||||||||| | ||| || |||||||| || |||| |||||||||| |||||||||||||  |||||||||||||||    
T  1514353 ttgaagctaggatttgtagctttttattatataattgatttttacacacaaatttattgttcaactcatttttacatg 1514430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 183 - 256
Target Start/End: Original strand, 43018461 - 43018534
Alignment:
Q  183 aattgaatctaatttgaagctagaaattggagttttttattctagaattaatttttacactcaaatttattgtt 256  Q
    |||||| |||||  ||||||||||| ||||| ||||| ||||||||||| || |||| ||||||||||||||||    
T  43018461 aattgattctaacatgaagctagaatttggaatttttaattctagaattgatgtttagactcaaatttattgtt 43018534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 196 - 252
Target Start/End: Original strand, 3515828 - 3515884
Alignment:
Q  196 ttgaagctagaaattggagttttttattctagaattaatttttacactcaaatttat 252  Q
    |||||||||||||||| || |||| ||||||||||| ||||||||||||||| ||||    
T  3515828 ttgaagctagaaattgtagcttttcattctagaattgatttttacactcaaaattat 3515884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 185 - 248
Target Start/End: Original strand, 33693020 - 33693083
Alignment:
Q  185 ttgaatctaatttgaagctagaaattggagttttttattctagaattaatttttacactcaaat 248  Q
    |||| ||||| |||||||||||||||| || |||| |||||| |||| ||||||||||||||||    
T  33693020 ttgattctaacttgaagctagaaattgtagcttttgattctataattgatttttacactcaaat 33693083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 213 - 275
Target Start/End: Original strand, 3416107 - 3416169
Alignment:
Q  213 agttttttattctagaattaatttttacactcaaatttattgtttgactcatttttacatgga 275  Q
    ||||||||||| ||||||| |||||||||| ||||||||| |||| ||||| ||||| |||||    
T  3416107 agttttttattttagaattgatttttacacacaaatttatagtttaactcaattttatatgga 3416169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 181 - 253
Target Start/End: Original strand, 6574176 - 6574248
Alignment:
Q  181 agaattgaatctaatttgaagctagaaattggagttttttattctagaattaatttttacactcaaatttatt 253  Q
    |||||||| ||||| || |||||| ||||| ||| |||| ||| ||||||||||||| | |||||||||||||    
T  6574176 agaattgattctaactttaagctaaaaattagagcttttgattgtagaattaattttcagactcaaatttatt 6574248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 233 - 273
Target Start/End: Original strand, 27500332 - 27500372
Alignment:
Q  233 atttttacactcaaatttattgtttgactcatttttacatg 273  Q
    ||||||||||||||||||||||||  |||||||||||||||    
T  27500332 atttttacactcaaatttattgttcaactcatttttacatg 27500372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 196 - 252
Target Start/End: Complemental strand, 32370106 - 32370050
Alignment:
Q  196 ttgaagctagaaattggagttttttattctagaattaatttttacactcaaatttat 252  Q
    |||||| ||||| ||| | |||||||||||||||||| ||||||||| |||||||||    
T  32370106 ttgaagttagaatttgtaattttttattctagaattattttttacacacaaatttat 32370050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 196 - 239
Target Start/End: Complemental strand, 37522985 - 37522942
Alignment:
Q  196 ttgaagctagaaattggagttttttattctagaattaattttta 239  Q
    |||||||||||| |||||||||||||| |||||||| |||||||    
T  37522985 ttgaagctagaagttggagttttttatcctagaattgattttta 37522942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 233 - 272
Target Start/End: Complemental strand, 52263685 - 52263646
Alignment:
Q  233 atttttacactcaaatttattgtttgactcatttttacat 272  Q
    ||||||||||||||||||||||||| ||||| ||||||||    
T  52263685 atttttacactcaaatttattgtttaactcagttttacat 52263646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 190 - 268
Target Start/End: Original strand, 4554912 - 4554989
Alignment:
Q  190 tctaatttgaagctagaaattggagttttttattctagaattaatttttacactcaaatttattgtttgactcattttt 268  Q
    |||||||||||| ||||  |||||||||||| || || | || |||||||  |||||||||||||||||| ||||||||    
T  4554912 tctaatttgaagttagactttggagttttttctt-taaatttgatttttagtctcaaatttattgtttgattcattttt 4554989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 196 - 250
Target Start/End: Complemental strand, 28083963 - 28083909
Alignment:
Q  196 ttgaagctagaaattggagttttttattctagaattaatttttacactcaaattt 250  Q
    |||||||||||| ||| || |||| |||||| ||||||||||||||| |||||||    
T  28083963 ttgaagctagaatttgtagcttttgattctataattaatttttacacacaaattt 28083909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 216 - 273
Target Start/End: Complemental strand, 213592 - 213535
Alignment:
Q  216 tttttattctagaattaatttttacactcaaatttattgtttgactcatttttacatg 273  Q
    |||| ||||||||||| ||||||| |||||||||| |||||  ||||| |||||||||    
T  213592 ttttgattctagaattgatttttaaactcaaatttgttgttcaactcacttttacatg 213535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 196 - 272
Target Start/End: Complemental strand, 48549087 - 48549013
Alignment:
Q  196 ttgaagctagaaattggagttttttattctagaattaatttttacactcaaatttattgtttgactcatttttacat 272  Q
    |||||||||||||||| || || | ||||||||||| ||||||| ||||  ||||||||||  ||||| ||||||||    
T  48549087 ttgaagctagaaattgtagcttctgattctagaattgatttttaaactc--atttattgttcaactcacttttacat 48549013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 256
Target Start/End: Complemental strand, 52013566 - 52013493
Alignment:
Q  183 aattgaatctaatttgaagctagaaattggagttttttattctagaattaatttttacactcaaatttattgtt 256  Q
    |||||| ||||| ||||||||| ||| ||  || | | ||||||||||| ||||||||||||||||||| ||||    
T  52013566 aattgattctaacttgaagctaaaaactgtggtctctgattctagaattgatttttacactcaaatttactgtt 52013493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 196 - 272
Target Start/End: Original strand, 6041485 - 6041560
Alignment:
Q  196 ttgaagctagaaattggagttttttattctagaattaatttttacactcaaatttattgtttgactcatttttacat 272  Q
    |||||||||||| ||| ||  ||| |||||||||||  |||||| |||| |||||||||||| ||||| ||||||||    
T  6041485 ttgaagctagaatttgaagcctttgattctagaattgttttttagactc-aatttattgtttaactcacttttacat 6041560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 216 - 256
Target Start/End: Original strand, 17284126 - 17284166
Alignment:
Q  216 tttttattctagaattaatttttacactcaaatttattgtt 256  Q
    |||| |||||| |||| ||||||||||||||||||||||||    
T  17284126 ttttgattctaaaattgatttttacactcaaatttattgtt 17284166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 196 - 256
Target Start/End: Complemental strand, 20026239 - 20026179
Alignment:
Q  196 ttgaagctagaaattggagttttttattctagaattaatttttacactcaaatttattgtt 256  Q
    |||||||||||||||  || |||| | ||||||||| ||||  ||||||||||||||||||    
T  20026239 ttgaagctagaaattcaagcttttaactctagaattgatttgaacactcaaatttattgtt 20026179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 164 - 256
Target Start/End: Complemental strand, 28287442 - 28287351
Alignment:
Q  164 gttggttgctttagagaagaattgaatctaatttgaagctagaaattggagttttttattctagaattaatttttacactcaaatttattgtt 256  Q
    |||||||||||| ||| |||||||  |||| || ||||| || | ||| || |||| ||| ||||||| ||||| ||||||||||||||||||    
T  28287442 gttggttgcttttgagtagaattggttctactt-gaagcaaggatttgtagcttttgattttagaattgattttaacactcaaatttattgtt 28287351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 196 - 252
Target Start/End: Original strand, 44801595 - 44801651
Alignment:
Q  196 ttgaagctagaaattggagttttttattctagaattaatttttacactcaaatttat 252  Q
    |||||| ||| | ||| |||||||||||||| ||||||||||||| | |||||||||    
T  44801595 ttgaagttaggatttgtagttttttattctaaaattaatttttacgcgcaaatttat 44801651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 60; Significance: 1e-25; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 181 - 256
Target Start/End: Complemental strand, 30926868 - 30926793
Alignment:
Q  181 agaattgaatctaatttgaagctagaaattggagttttttattctagaattaatttttacactcaaatttattgtt 256  Q
    ||||| || ||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  30926868 agaatggattctaacttgaagctagaaattggagttttttattctagaattgatttttacactcaaatttattgtt 30926793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 196 - 272
Target Start/End: Complemental strand, 1485221 - 1485145
Alignment:
Q  196 ttgaagctagaaattggagttttttattctagaattaatttttacactcaaatttattgtttgactcatttttacat 272  Q
    ||||| ||||||||||||| |||| ||||||||||| ||||| ||||||||||||||||||  ||||| ||||||||    
T  1485221 ttgaatctagaaattggagcttttgattctagaattgattttaacactcaaatttattgttcaactcacttttacat 1485145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 181 - 272
Target Start/End: Complemental strand, 31305937 - 31305846
Alignment:
Q  181 agaattgaatctaatttgaagctagaaattggagttttttattctagaattaatttttacactcaaatttattgtttgactcatttttacat 272  Q
    |||| ||| ||||| ||||||||| ||||||||| |||| ||||||||||| |||| ||||||||||||||||| |  ||||| ||||||||    
T  31305937 agaactgattctaacttgaagctaaaaattggagcttttgattctagaattgatttatacactcaaatttattgatcaactcacttttacat 31305846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 196 - 273
Target Start/End: Original strand, 852542 - 852619
Alignment:
Q  196 ttgaagctagaaattggagttttttattctagaattaatttttacactcaaatttattgtttgactcatttttacatg 273  Q
    |||||||||||||||| || || | ||||||||||| |||||||||| ||||| |||||||| ||||| |||||||||    
T  852542 ttgaagctagaaattgtaggttctgattctagaattgatttttacacccaaatgtattgtttaactcacttttacatg 852619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 196 - 256
Target Start/End: Original strand, 34898705 - 34898766
Alignment:
Q  196 ttgaagctagaaattggagtttt-ttattctagaattaatttttacactcaaatttattgtt 256  Q
    ||||||||||||||| ||||||| ||||||||||||| ||||| |||||| |||||||||||    
T  34898705 ttgaagctagaaattagagtttttttattctagaattgattttaacactcgaatttattgtt 34898766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 190 - 273
Target Start/End: Original strand, 9505774 - 9505857
Alignment:
Q  190 tctaatttgaagctagaaattggagttttttattctagaattaatttttacactcaaatttattgtttgactcatttttacatg 273  Q
    ||||| |||||| |||||||||||| |||| ||||||  ||| ||||||| ||||||||||||||||  || || |||||||||    
T  9505774 tctaacttgaagatagaaattggagcttttgattctatgattgatttttaaactcaaatttattgttcaacacacttttacatg 9505857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 196 - 253
Target Start/End: Original strand, 2234525 - 2234582
Alignment:
Q  196 ttgaagctagaaattggagttttttattctagaattaatttttacactcaaatttatt 253  Q
    ||||||||| ||| || || |||| ||||||||||| ||||| |||||||||||||||    
T  2234525 ttgaagctaaaaactgaagcttttgattctagaattgattttaacactcaaatttatt 2234582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 199 - 256
Target Start/End: Original strand, 10874507 - 10874564
Alignment:
Q  199 aagctagaaattggagttttttattctagaattaatttttacactcaaatttattgtt 256  Q
    |||||||||||| ||| |||| ||||||||||| ||||||||| ||||| ||| ||||    
T  10874507 aagctagaaattagagcttttgattctagaattgatttttacattcaaacttagtgtt 10874564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 216 - 253
Target Start/End: Complemental strand, 34027472 - 34027435
Alignment:
Q  216 tttttattctagaattaatttttacactcaaatttatt 253  Q
    |||| ||||||||||| |||||||||||||||||||||    
T  34027472 ttttgattctagaattgatttttacactcaaatttatt 34027435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 199 - 256
Target Start/End: Original strand, 34063325 - 34063382
Alignment:
Q  199 aagctagaaattggagttttttattctagaattaatttttacactcaaatttattgtt 256  Q
    ||||||||||||| || || | ||||||||||||| ||||||| ||||| ||||||||    
T  34063325 aagctagaaattgtaggttctcattctagaattaacttttacaatcaaacttattgtt 34063382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 255
Target Start/End: Original strand, 25388075 - 25388146
Alignment:
Q  183 aattgaatctaatttgaagctagaaattggagttttttattctagaattaatttttacactcaaatttattgt 255  Q
    |||||| ||||||| ||| | |||||||| ||| ||| ||| ||||||| ||||| |||||||||||||||||    
T  25388075 aattgattctaatt-gaaacaagaaattgaagtctttgattttagaattgattttgacactcaaatttattgt 25388146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 8e-18; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 190 - 256
Target Start/End: Complemental strand, 4336706 - 4336640
Alignment:
Q  190 tctaatttgaagctagaaattggagttttttattctagaattaatttttacactcaaatttattgtt 256  Q
    ||||| ||||||||||||| | ||| |||||||| ||||||||||||||||||||||||||||||||    
T  4336706 tctaacttgaagctagaaaattgagctttttattttagaattaatttttacactcaaatttattgtt 4336640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 194 - 273
Target Start/End: Complemental strand, 16972141 - 16972062
Alignment:
Q  194 atttgaagctagaaattggagttttttattctagaattaatttttacactcaaatttattgtttgactcatttttacatg 273  Q
    |||||||||||||| ||| ||||||| ||| ||||||| ||||||| || |||||||||||||  | ||| |||||||||    
T  16972141 atttgaagctagaatttgtagtttttaattttagaattgatttttaaacacaaatttattgttcaaatcacttttacatg 16972062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 213 - 252
Target Start/End: Original strand, 5893234 - 5893273
Alignment:
Q  213 agttttttattctagaattaatttttacactcaaatttat 252  Q
    ||||||||||||||||||||||| |||||| |||||||||    
T  5893234 agttttttattctagaattaattattacacacaaatttat 5893273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 194 - 272
Target Start/End: Original strand, 30098918 - 30098994
Alignment:
Q  194 atttgaagctagaaattggagttttttattctagaattaatttttacactcaaatttattgtttgactcatttttacat 272  Q
    |||||||||||||| ||| || |||  |||||||||||||||||||||   |||||||| |||| ||||| ||||||||    
T  30098918 atttgaagctagaatttgtagctttcgattctagaattaatttttaca--aaaatttatagtttaactcacttttacat 30098994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 207 - 257
Target Start/End: Original strand, 3206078 - 3206128
Alignment:
Q  207 aattggagttttttattctagaattaatttttacactcaaatttattgttt 257  Q
    ||||||||||||||||| || |||| || |||||||| |||||||||||||    
T  3206078 aattggagttttttattataaaattgatctttacacttaaatttattgttt 3206128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 194 - 272
Target Start/End: Complemental strand, 13384731 - 13384653
Alignment:
Q  194 atttgaagctagaaattggagttttttattctagaattaatttttacactcaaatttattgtttgactcatttttacat 272  Q
    ||||||||||| || ||| || |||| ||||||||||| ||||| |||| ||||||||| |||  ||||| ||||||||    
T  13384731 atttgaagctaaaatttgtagcttttgattctagaattgattttcacacacaaatttatagttcaactcacttttacat 13384653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 194 - 272
Target Start/End: Complemental strand, 26100223 - 26100145
Alignment:
Q  194 atttgaagctagaaattggagttttttattctagaattaatttttacactcaaatttattgtttgactcatttttacat 272  Q
    |||||||||||| | ||| || |||| |||||| |||| |||||||||| ||||||||| |||  ||||| ||||||||    
T  26100223 atttgaagctaggatttgtagcttttgattctataattgatttttacacacaaatttatggttcaactcacttttacat 26100145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 213 - 273
Target Start/End: Original strand, 32736489 - 32736549
Alignment:
Q  213 agttttttattctagaattaatttttacactcaaatttattgtttgactcatttttacatg 273  Q
    ||||||||||| || ||||||||||||||| ||||||||| |||  | ||| |||||||||    
T  32736489 agttttttattttaaaattaatttttacacacaaatttatagttcaattcacttttacatg 32736549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 216 - 272
Target Start/End: Complemental strand, 34478249 - 34478193
Alignment:
Q  216 tttttattctagaattaatttttacactcaaatttattgtttgactcatttttacat 272  Q
    |||| ||| ||||||| ||||||| ||||||||||||||||  ||| ||||||||||    
T  34478249 ttttgattttagaattcatttttatactcaaatttattgttcaacttatttttacat 34478193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 8e-18; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 178 - 272
Target Start/End: Original strand, 44439246 - 44439340
Alignment:
Q  178 agaagaattgaatctaatttgaagctagaaattggagttttttattctagaattaatttttacactcaaatttattgtttgactcatttttacat 272  Q
    ||||||||||| ||||| ||||||||| || |||||| |||| |||||| |||| ||||| ||||||||||||||||||  ||||| ||||||||    
T  44439246 agaagaattgattctaacttgaagctaaaatttggagcttttgattctaaaattgattttaacactcaaatttattgttcaactcacttttacat 44439340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 197 - 273
Target Start/End: Original strand, 13912798 - 13912874
Alignment:
Q  197 tgaagctagaaattggagttttttattctagaattaatttttacactcaaatttattgtttgactcatttttacatg 273  Q
    ||||||||||| ||| | |||||||||||||||||||||||||||| ||||||||  |||  |||||||||||||||    
T  13912798 tgaagctagaatttgtaattttttattctagaattaatttttacacacaaatttaccgttcaactcatttttacatg 13912874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 190 - 273
Target Start/End: Complemental strand, 33962062 - 33961979
Alignment:
Q  190 tctaatttgaagctagaaattggagttttttattctagaattaatttttacactcaaatttattgtttgactcatttttacatg 273  Q
    ||||| || ||||| ||||||||||||||| |||||| |||| ||||||| ||||||||||||||||  | |||||||||||||    
T  33962062 tctaactttaagcttgaaattggagtttttgattctataattgatttttagactcaaatttattgttcaagtcatttttacatg 33961979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 181 - 256
Target Start/End: Complemental strand, 3476519 - 3476444
Alignment:
Q  181 agaattgaatctaatttgaagctagaaattggagttttttattctagaattaatttttacactcaaatttattgtt 256  Q
    |||||||| ||||| || |||||| ||||| ||| |||| ||||||||||| ||||||||| |||||| |||||||    
T  3476519 agaattgattctaacttaaagctaaaaattagagcttttgattctagaatttatttttacattcaaatgtattgtt 3476444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 181 - 272
Target Start/End: Complemental strand, 33502938 - 33502847
Alignment:
Q  181 agaattgaatctaatttgaagctagaaattggagttttttattctagaattaatttttacactcaaatttattgtttgactcatttttacat 272  Q
    |||||||| ||||| |||||||||||| ||  ||||||| | ||||||  | ||| ||||||| ||||||||||||  ||||||||||||||    
T  33502938 agaattgattctaacttgaagctagaatttcaagtttttgagtctagatgtgattattacactaaaatttattgttcaactcatttttacat 33502847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 196 - 257
Target Start/End: Complemental strand, 10619016 - 10618955
Alignment:
Q  196 ttgaagctagaaattggagttttttattctagaattaatttttacactcaaatttattgttt 257  Q
    ||||||||||||||| ||| |||| |||||| |||| ||||| |||||||||||| ||||||    
T  10619016 ttgaagctagaaattagagcttttgattctataattgattttaacactcaaatttgttgttt 10618955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 196 - 253
Target Start/End: Original strand, 42982554 - 42982611
Alignment:
Q  196 ttgaagctagaaattggagttttttattctagaattaatttttacactcaaatttatt 253  Q
    |||||||||||||||| || |||| |||| |||||| |||||||||| ||||||||||    
T  42982554 ttgaagctagaaattgtagcttttgattccagaattgatttttacacacaaatttatt 42982611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 184 - 246
Target Start/End: Original strand, 7630191 - 7630253
Alignment:
Q  184 attgaatctaatttgaagctagaaattggagttttttattctagaattaatttttacactcaa 246  Q
    ||||| |||||| |||||||||| |||| || |||| ||||||||||| |||||| |||||||    
T  7630191 attgattctaatgtgaagctagacattgtagcttttgattctagaattgatttttccactcaa 7630253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 181 - 256
Target Start/End: Original strand, 7629866 - 7629939
Alignment:
Q  181 agaattgaatctaatttgaagctagaaattggagttttttattctagaattaatttttacactcaaatttattgtt 256  Q
    |||||||| ||||| ||||||||||| |||  || || ||| ||||||||| || |||||||||||||| ||||||    
T  7629866 agaattgattctaacttgaagctagagatt--agcttcttactctagaattgatatttacactcaaattcattgtt 7629939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 180 - 256
Target Start/End: Original strand, 36374311 - 36374386
Alignment:
Q  180 aagaattgaatctaatttgaagctagaaattggagttttttattctagaattaatttttacactcaaatttattgtt 256  Q
    ||||||| | ||||||| ||||||| || |||||||||||| || || |||||||| | | ||||||||||||||||    
T  36374311 aagaatttattctaattagaagctaaaatttggagtttttt-ttttataattaattctcaaactcaaatttattgtt 36374386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 216 - 272
Target Start/End: Original strand, 42741007 - 42741063
Alignment:
Q  216 tttttattctagaattaatttttacactcaaatttattgtttgactcatttttacat 272  Q
    |||| ||||||||||| ||||||||||||||||||| |||   ||||| ||||||||    
T  42741007 ttttgattctagaattgatttttacactcaaatttactgtccaactcacttttacat 42741063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 3e-17; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 196 - 257
Target Start/End: Complemental strand, 30182371 - 30182310
Alignment:
Q  196 ttgaagctagaaattggagttttttattctagaattaatttttacactcaaatttattgttt 257  Q
    ||||||||| |||||| || |||| |||||||||||||||||||||||||||||||||||||    
T  30182371 ttgaagctaaaaattgtagcttttgattctagaattaatttttacactcaaatttattgttt 30182310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 196 - 273
Target Start/End: Complemental strand, 38123741 - 38123664
Alignment:
Q  196 ttgaagctagaaattggagttttttattctagaattaatttttacactcaaatttattgtttgactcatttttacatg 273  Q
    |||||||||||||||| || || | ||||||||||| |||||||||||||||||||||| |  ||||| |||||||||    
T  38123741 ttgaagctagaaattgtagcttctaattctagaattgatttttacactcaaatttattggtcaactcacttttacatg 38123664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 196 - 273
Target Start/End: Complemental strand, 40561833 - 40561756
Alignment:
Q  196 ttgaagctagaaattggagttttttattctagaattaatttttacactcaaatttattgtttgactcatttttacatg 273  Q
    |||||| ||||||||| ||||| | | |||||||||||||| ||||||||||| |||||||  ||||| |||||||||    
T  40561833 ttgaagttagaaattgtagtttgtaagtctagaattaatttatacactcaaatatattgttcaactcacttttacatg 40561756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 196 - 253
Target Start/End: Original strand, 27571872 - 27571929
Alignment:
Q  196 ttgaagctagaaattggagttttttattctagaattaatttttacactcaaatttatt 253  Q
    |||||| |||||||||||| |||| ||||||||||| ||||| |||||||| ||||||    
T  27571872 ttgaagttagaaattggagcttttgattctagaattgattttaacactcaagtttatt 27571929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 221 - 253
Target Start/End: Complemental strand, 22310509 - 22310477
Alignment:
Q  221 attctagaattaatttttacactcaaatttatt 253  Q
    ||||||||||||||||||||||| |||||||||    
T  22310509 attctagaattaatttttacacttaaatttatt 22310477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 3e-17; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 196 - 273
Target Start/End: Original strand, 33843987 - 33844064
Alignment:
Q  196 ttgaagctagaaattggagttttttattctagaattaatttttacactcaaatttattgtttgactcatttttacatg 273  Q
    ||||||||||||||||||| |||| |||||| |||| ||||| ||||||||||||||||||  ||| |||||||||||    
T  33843987 ttgaagctagaaattggagcttttgattctaaaattgattttaacactcaaatttattgttcaacttatttttacatg 33844064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 205 - 272
Target Start/End: Original strand, 4243406 - 4243473
Alignment:
Q  205 gaaattggagttttttattctagaattaatttttacactcaaatttattgtttgactcatttttacat 272  Q
    |||||||||| |||| ||||||||||| ||||||||||||||||||||||||  ||||| ||||||||    
T  4243406 gaaattggagcttttgattctagaattgatttttacactcaaatttattgttctactcacttttacat 4243473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 185 - 272
Target Start/End: Original strand, 10185193 - 10185280
Alignment:
Q  185 ttgaatctaatttgaagctagaaattggagttttttattctagaattaatttttacactcaaatttattgtttgactcatttttacat 272  Q
    |||| ||||| |||||| ||||||||| || |||| |||||| |||| || |||||||||||||||||||||| ||||| ||||||||    
T  10185193 ttgattctaacttgaaggtagaaattgaagcttttgattctaaaattgatctttacactcaaatttattgtttaactcacttttacat 10185280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 183 - 252
Target Start/End: Complemental strand, 2206431 - 2206362
Alignment:
Q  183 aattgaatctaatttgaagctagaaattggagttttttattctagaattaatttttacactcaaatttat 252  Q
    |||||| ||||  ||||||||| ||||||||| |||| ||||||| ||| |||||| |||||||||||||    
T  2206431 aattgattctagcttgaagctaaaaattggagcttttgattctaggattgatttttgcactcaaatttat 2206362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 181 - 273
Target Start/End: Complemental strand, 32818459 - 32818368
Alignment:
Q  181 agaattgaatctaatttgaagctagaaattggagttttttattctagaattaatttttacactcaaatttattgtttgactcatttttacatg 273  Q
    |||||||| |||| ||||||||||||| ||| || |||| ||||||||||| |||||| ||| ||||||||| |||  ||| | |||||||||    
T  32818459 agaattgattcta-tttgaagctagaatttgtagcttttgattctagaattgatttttgcacacaaatttatagttcaactaacttttacatg 32818368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 205 - 257
Target Start/End: Original strand, 33843702 - 33843754
Alignment:
Q  205 gaaattggagttttttattctagaattaatttttacactcaaatttattgttt 257  Q
    |||||||||| ||||||| ||| |||| ||||| |||||||||||||||||||    
T  33843702 gaaattggagctttttatcctaaaattgattttaacactcaaatttattgttt 33843754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 196 - 256
Target Start/End: Original strand, 37439155 - 37439215
Alignment:
Q  196 ttgaagctagaaattggagttttttattctagaattaatttttacactcaaatttattgtt 256  Q
    |||||||||||||||  || |||| |||||| |||| |||||||||||||| |||||||||    
T  37439155 ttgaagctagaaattatagcttttaattctataattgatttttacactcaattttattgtt 37439215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 196 - 228
Target Start/End: Complemental strand, 48045776 - 48045744
Alignment:
Q  196 ttgaagctagaaattggagttttttattctaga 228  Q
    |||||||||||||||||||||||||||||||||    
T  48045776 ttgaagctagaaattggagttttttattctaga 48045744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 190 - 241
Target Start/End: Original strand, 8330120 - 8330171
Alignment:
Q  190 tctaatttgaagctagaaattggagttttttattctagaattaatttttaca 241  Q
    ||||| ||||||||||||||||||| |||| |||||| |||| |||||||||    
T  8330120 tctaacttgaagctagaaattggagcttttgattctataattgatttttaca 8330171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 213 - 272
Target Start/End: Complemental strand, 47596359 - 47596300
Alignment:
Q  213 agttttttattctagaattaatttttacactcaaatttattgtttgactcatttttacat 272  Q
    ||||||| ||| || |||| |||||||||||||||||||||||||  | |||||||||||    
T  47596359 agtttttgattataaaattgatttttacactcaaatttattgtttagcccatttttacat 47596300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 216 - 273
Target Start/End: Complemental strand, 41751327 - 41751270
Alignment:
Q  216 tttttattctagaattaatttttacactcaaatttattgtttgactcatttttacatg 273  Q
    |||| ||||||||||| ||||||| ||| ||||||||||||| | ||| |||||||||    
T  41751327 ttttgattctagaattgatttttaaacttaaatttattgtttaattcagttttacatg 41751270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 196 - 272
Target Start/End: Original strand, 9064241 - 9064317
Alignment:
Q  196 ttgaagctagaaattggagttttttattctagaattaatttttacactcaaatttattgtttgactcatttttacat 272  Q
    ||||| |||||| ||| ||||||| ||||||||||| ||||| |||||||| ||||  |||  ||||| ||||||||    
T  9064241 ttgaaactagaatttgtagtttttgattctagaattgattttcacactcaagtttacggttcaactcacttttacat 9064317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 199 - 251
Target Start/End: Original strand, 20712664 - 20712715
Alignment:
Q  199 aagctagaaattggagttttttattctagaattaatttttacactcaaattta 251  Q
    |||||||||||||||| |||| |||||| |||| |||||||||||||| ||||    
T  20712664 aagctagaaattggagctttt-attctataattgatttttacactcaatttta 20712715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 5e-16; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 194 - 256
Target Start/End: Complemental strand, 30301076 - 30301013
Alignment:
Q  194 atttgaagctagaaattggagtttttt-attctagaattaatttttacactcaaatttattgtt 256  Q
    ||||||||||||||||||||||||||| |||||||||||  |||| ||||||||||||||||||    
T  30301076 atttgaagctagaaattggagttttttaattctagaattggttttaacactcaaatttattgtt 30301013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 196 - 273
Target Start/End: Complemental strand, 27266869 - 27266792
Alignment:
Q  196 ttgaagctagaaattggagttttttattctagaattaatttttacactcaaatttattgtttgactcatttttacatg 273  Q
    |||||||||||||||| || |  | |||| |||||||||||||||||||||||||||||||  ||| | |||||||||    
T  27266869 ttgaagctagaaattgtagctaatgattcaagaattaatttttacactcaaatttattgttcaactaacttttacatg 27266792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 196 - 273
Target Start/End: Complemental strand, 35264486 - 35264409
Alignment:
Q  196 ttgaagctagaaattggagttttttattctagaattaatttttacactcaaatttattgtttgactcatttttacatg 273  Q
    ||||| ||||||||| ||| |||| ||||||||||| ||||| ||||| ||||||||||||  | |||||||||||||    
T  35264486 ttgaaactagaaattagagcttttgattctagaattgattttaacacttaaatttattgttcaagtcatttttacatg 35264409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 196 - 272
Target Start/End: Original strand, 3776532 - 3776608
Alignment:
Q  196 ttgaagctagaaattggagttttttattctagaattaatttttacactcaaatttattgtttgactcatttttacat 272  Q
    ||||| |||||||||| || || | |||||||||||||||||||||||||||||| ||| |  ||||| ||||||||    
T  3776532 ttgaatctagaaattgtagcttctgattctagaattaatttttacactcaaatttgttgctgaactcacttttacat 3776608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 183 - 247
Target Start/End: Original strand, 44489235 - 44489299
Alignment:
Q  183 aattgaatctaatttgaagctagaaattggagttttttattctagaattaatttttacactcaaa 247  Q
    |||||| ||||| ||||  |||||| |||||||||||||||||| |||| |||||||||||||||    
T  44489235 aattgattctaacttgatactagaagttggagttttttattctacaattgatttttacactcaaa 44489299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 199 - 238
Target Start/End: Original strand, 829906 - 829945
Alignment:
Q  199 aagctagaaattggagttttttattctagaattaattttt 238  Q
    ||||||||||||||||||||||||||||||||| ||||||    
T  829906 aagctagaaattggagttttttattctagaattgattttt 829945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 194 - 273
Target Start/End: Original strand, 36302191 - 36302270
Alignment:
Q  194 atttgaagctagaaattggagttttttattctagaattaatttttacactcaaatttattgtttgactcatttttacatg 273  Q
    ||||||||||||| ||||||| |||| ||| ||||||| |||||  |||| ||||||||||||  ||||| |||||||||    
T  36302191 atttgaagctagagattggagattttgattttagaattgattttagcacttaaatttattgttcaactcacttttacatg 36302270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 211 - 272
Target Start/End: Complemental strand, 46853594 - 46853533
Alignment:
Q  211 ggagttttttattctagaattaatttttacactcaaatttattgtttgactcatttttacat 272  Q
    |||| |||| ||||||||||| ||||| ||||||||||||||||||  ||||| ||||||||    
T  46853594 ggagcttttgattctagaattgattttaacactcaaatttattgttcaactcacttttacat 46853533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 201 - 256
Target Start/End: Complemental strand, 44958676 - 44958621
Alignment:
Q  201 gctagaaattggagttttttattctagaattaatttttacactcaaatttattgtt 256  Q
    |||||||||||||| |||| ||||||||| | ||||| |||||||| |||||||||    
T  44958676 gctagaaattggagcttttgattctagaaatgattttaacactcaactttattgtt 44958621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 181 - 243
Target Start/End: Complemental strand, 20484082 - 20484020
Alignment:
Q  181 agaattgaatctaatttgaagctagaaattggagttttttattctagaattaatttttacact 243  Q
    |||||||| |||||||||||||||||| || || ||||| ||||| ||||| ||| |||||||    
T  20484082 agaattgattctaatttgaagctagaatttagaatttttcattcttgaattgattgttacact 20484020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 206 - 256
Target Start/End: Original strand, 23187865 - 23187915
Alignment:
Q  206 aaattggagttttttattctagaattaatttttacactcaaatttattgtt 256  Q
    ||||||||| |||| ||||||||||| | |||||||||||||||| |||||    
T  23187865 aaattggagcttttaattctagaattgaattttacactcaaatttgttgtt 23187915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 200 - 269
Target Start/End: Original strand, 35058375 - 35058445
Alignment:
Q  200 agctagaaattggagttttttattctagaattaatttttacactcaaat-ttattgtttgactcattttta 269  Q
    ||||||||||| ||| |||| ||||||||||| ||||| |||||||||| ||||||||  ||||| |||||    
T  35058375 agctagaaattcgagcttttgattctagaattgattttaacactcaaatattattgttcaactcactttta 35058445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 256
Target Start/End: Original strand, 37703132 - 37703169
Alignment:
Q  219 ttattctagaattaatttttacactcaaatttattgtt 256  Q
    ||||| || |||||||||||||||||||||||||||||    
T  37703132 ttattttaaaattaatttttacactcaaatttattgtt 37703169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 196 - 255
Target Start/End: Complemental strand, 3845189 - 3845129
Alignment:
Q  196 ttgaagctagaaattggagttttttattctagaatt-aatttttacactcaaatttattgt 255  Q
    ||||| ||||||| ||||| |||| ||||||||||| | |||||||||| |||||||||||    
T  3845189 ttgaaactagaaactggagcttttgattctagaattgattttttacactaaaatttattgt 3845129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 196 - 256
Target Start/End: Complemental strand, 25359649 - 25359589
Alignment:
Q  196 ttgaagctagaaattggagttttttattctagaattaatttttacactcaaatttattgtt 256  Q
    |||||| ||||| ||| |||||||||||||| |||| ||||| |||| || ||||||||||    
T  25359649 ttgaagttagaatttgtagttttttattctataattgattttcacacacatatttattgtt 25359589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 198 - 266
Target Start/End: Complemental strand, 38332627 - 38332559
Alignment:
Q  198 gaagctagaaattggagttttttattctagaattaatttttacactcaaatttattgtttgactcattt 266  Q
    ||||||| ||||||||| || | |||||| ||||  | |||||||||||||||||||||  ||||||||    
T  38332627 gaagctacaaattggagcttctgattctaaaattggtatttacactcaaatttattgttcaactcattt 38332559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 181 - 273
Target Start/End: Original strand, 33608499 - 33608591
Alignment:
Q  181 agaattgaatctaatttgaagctagaaattggagttttttattctagaattaatttttacactcaaatttattgtttgactcatttttacatg 273  Q
    |||||||| ||||| |||||||||||| ||||||||||| ||||||||||  ||||||||| | ||||| || |||  ||||| |||||||||    
T  33608499 agaattgattctaacttgaagctagaagttggagtttttcattctagaatggatttttacagttaaattcatagttcaactcacttttacatg 33608591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 182 - 231
Target Start/End: Original strand, 42724403 - 42724452
Alignment:
Q  182 gaattgaatctaatttgaagctagaaattggagttttttattctagaatt 231  Q
    ||||||| ||||| |||||||||||||||| |||||||||||||||||||    
T  42724403 gaattgattctaacttgaagctagaaattgaagttttttattctagaatt 42724452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 168 - 252
Target Start/End: Complemental strand, 3043124 - 3043040
Alignment:
Q  168 gttgctttagagaagaattgaatctaatttgaagctagaaattggagttttttattctagaattaatttttacactcaaatttat 252  Q
    ||||||| |||  |||||||| |||||  ||||||||||||||||||||||  ||||||||||| ||||||| | ||||| ||||    
T  3043124 gttgcttaagaatagaattgattctaacatgaagctagaaattggagttttcaattctagaattgatttttatattcaaagttat 3043040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 190 - 269
Target Start/End: Original strand, 37877062 - 37877141
Alignment:
Q  190 tctaatttgaagctagaaattggagttttttattctagaattaatttttacactcaaatttattgtttgactcattttta 269  Q
    ||||| |||||||||||| || ||||||||  | ||||||| ||||||||  |||||||||||||||| ||||| |||||    
T  37877062 tctaacttgaagctagaatttagagtttttgctcctagaatgaatttttagcctcaaatttattgtttaactcactttta 37877141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 181 - 273
Target Start/End: Original strand, 10898718 - 10898808
Alignment:
Q  181 agaattgaatctaatttgaagctagaaattggagttttttattctagaattaatttttacactcaaatttattgtttgactcatttttacatg 273  Q
    |||||||| ||||| ||||||  ||||||||||||| || | ||||  ||| |||||||||| |||||||||||||  ||||| |||||||||    
T  10898718 agaattgattctaacttgaagtaagaaattggagttattgaatcta--attgatttttacacacaaatttattgttcaactcacttttacatg 10898808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 183 - 252
Target Start/End: Complemental strand, 11132873 - 11132804
Alignment:
Q  183 aattgaatctaatttgaagctagaaattggagttttttattctagaattaatttttacactcaaatttat 252  Q
    |||||| ||||| ||||||||| |||||| || |||||||| ||||||| || |||||||||||| ||||    
T  11132873 aattgattctaacttgaagctacaaattgtagctttttattgtagaattgatatttacactcaaaattat 11132804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 196 - 257
Target Start/End: Complemental strand, 24306171 - 24306110
Alignment:
Q  196 ttgaagctagaaattggagttttttattctagaattaatttttacactcaaatttattgttt 257  Q
    |||||| ||||||||| |  |||| |||||| |||| |||||||||||||||||||||||||    
T  24306171 ttgaagttagaaattgtaacttttgattctataattgatttttacactcaaatttattgttt 24306110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 196 - 257
Target Start/End: Original strand, 24367145 - 24367206
Alignment:
Q  196 ttgaagctagaaattggagttttttattctagaattaatttttacactcaaatttattgttt 257  Q
    |||||| ||||||||| |  |||| |||||| |||| |||||||||||||||||||||||||    
T  24367145 ttgaagttagaaattgtaacttttgattctataattgatttttacactcaaatttattgttt 24367206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 196 - 273
Target Start/End: Original strand, 36639947 - 36640024
Alignment:
Q  196 ttgaagctagaaattggagttttttattctagaattaatttttacactcaaatttattgtttgactcatttttacatg 273  Q
    |||||||| ||||||| || || | |||||||||||  |||||||||||||||||| ||||   |||| |||||||||    
T  36639947 ttgaagctggaaattgtagcttctaattctagaattgttttttacactcaaatttaatgttcacctcacttttacatg 36640024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 181 - 273
Target Start/End: Complemental strand, 10859928 - 10859836
Alignment:
Q  181 agaattgaatctaatttgaagctagaaattggagttttttattctagaattaatttttacactcaaatttattgtttgactcatttttacatg 273  Q
    |||||||| ||||| |||||||||||| |||||| ||||   || | | || |||||||  ||||||||||||||||||| | || |||||||    
T  10859928 agaattgattctaacttgaagctagaatttggagcttttgcctcaacatttgatttttaacctcaaatttattgtttgaccctttcttacatg 10859836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 238 - 302
Target Start/End: Original strand, 14299850 - 14299913
Alignment:
Q  238 tacactcaaatttattgtttgactcatttttacatggaatgaatatatccaaatataaattactt 302  Q
    |||||||||| ||| ||||  |||||||||||||| |||||||| |||||||  |||||||||||    
T  14299850 tacactcaaacttactgttcaactcatttttacat-gaatgaatgtatccaataataaattactt 14299913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 246 - 302
Target Start/End: Original strand, 29922956 - 29923011
Alignment:
Q  246 aatttattgtttgactcatttttacatggaatgaatatatccaaatataaattactt 302  Q
    |||||||| ||| |||||||||| |||| ||||||| |||||||| |||||||||||    
T  29922956 aatttattttttaactcatttttgcatg-aatgaatgtatccaaacataaattactt 29923011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0283 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0283
Description:

Target: scaffold0283; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 182 - 231
Target Start/End: Original strand, 18377 - 18426
Alignment:
Q  182 gaattgaatctaatttgaagctagaaattggagttttttattctagaatt 231  Q
    ||||||| ||||| |||||||||||||||| |||||||||||||||||||    
T  18377 gaattgattctaacttgaagctagaaattgaagttttttattctagaatt 18426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0361 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0361
Description:

Target: scaffold0361; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 221 - 253
Target Start/End: Complemental strand, 14164 - 14132
Alignment:
Q  221 attctagaattaatttttacactcaaatttatt 253  Q
    ||||||||||| |||||||||||||||||||||    
T  14164 attctagaattgatttttacactcaaatttatt 14132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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