View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18200_high_23 (Length: 310)
Name: NF18200_high_23
Description: NF18200
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18200_high_23 |
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Alignment Details
Target: chr8 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 19 - 293
Target Start/End: Complemental strand, 10595160 - 10594886
Alignment:
| Q |
19 |
taaaaaactgcatttttt-ggttacaacaataaggcatgcatcaagcacatcatttcctccaattcaaacaatatgaagcaaacacatctgaggatcttt |
117 |
Q |
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| T |
10595160 |
taaaaaactgcatttttttggttacaacaataaggcatacatcaagcacatcatttcctccaattcaaacaatatgaagcaaacacatctgaggatcttt |
10595061 |
T |
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| Q |
118 |
tttattacataggcaaaacaatttggtaatttctctagagcttctcactattatactacatcaaaatttacaaaattcaacacattcctggttcacaaag |
217 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
10595060 |
tttattacataggcaaaacaatttggtaatatctctagagcttctcactattatactacatcaaaattt-caaaattcaacacattcctggttcacaaag |
10594962 |
T |
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| Q |
218 |
ttgtactgctattatacagggaatttaacatacacaaacctttcctatattttattatctatactatacacgatat |
293 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||| |
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| T |
10594961 |
ttgtactgctattatacagggaatttaacatacaaaaacctttcctatattctattatctatactatacacgatat |
10594886 |
T |
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