View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18200_high_4 (Length: 628)
Name: NF18200_high_4
Description: NF18200
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18200_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 409; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 122 - 611
Target Start/End: Complemental strand, 5947496 - 5947002
Alignment:
| Q |
122 |
caaattaccttactgaatttgagttaactttcatcgcatgtcctaatttttagctcaatggataaagtgatggattatgatcttgaccnnnnnnnnnnnn |
221 |
Q |
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| T |
5947496 |
caaattaccttactgaatttgagttaactttcatcgcatgtcctaatttttagctcaatggataaagtgatggattatgatcttgaccaaaaaaaaaaaa |
5947397 |
T |
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| Q |
222 |
nnnnngcgatggattatgaaataagtaagcatatgaatattgtttcgttcattctctaaaattgcaagcactctgttccgtgccggtgactctacactct |
321 |
Q |
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| T |
5947396 |
aaaa-gcgatggattatgaaataagtaagcatatgaatattgtttcgttcattctctaaaattgcaagccctctgttccgtgccggtgactctacactct |
5947298 |
T |
|
| Q |
322 |
aatcaaatgaacctacattgatccgaatctcaatctctgcaaatctcacacgctttcttttccgttcaaaaaaccgttattccctccgaaacagatcgga |
421 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5947297 |
aatcaaatgaacctacattgatccgaatttcaatctctgcaaatctcacacgctttcttttccgttcaaaaaaccgttattccctccgaaacagatcgga |
5947198 |
T |
|
| Q |
422 |
aaattacttccac------cgtcgccggtaagcgatccacttctcattcgtttttcatttcttgtatcaacgccgctatcatgcttctgcattgtttaca |
515 |
Q |
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| T |
5947197 |
aaattacttccaccgtcaccgtcgccggtaagcgatccacttctcattcgtttttcatttcttgtatcaacgccgctatcatgcttctgcattgtttaca |
5947098 |
T |
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| Q |
516 |
aatcacctcaatctgttgcatcaatgaaaactccattttcagatctctctgtttaatttccaatgctcatgtttttgcactgttttgattcgattc |
611 |
Q |
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| T |
5947097 |
aatcacctcaatctgttgcatcaatgaaaactccattttcagatctctctgtttaatttccaatgctcatgtttttgcactgttttgattcgattc |
5947002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 9 - 57
Target Start/End: Complemental strand, 5947608 - 5947560
Alignment:
| Q |
9 |
ttgacatgtgtgaattagttgactacgacgtatattttaaaatagaggg |
57 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5947608 |
ttgacatgtgtgaattagttgactacgacgtatattttaaaatagaggg |
5947560 |
T |
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