View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18200_high_7 (Length: 547)

Name: NF18200_high_7
Description: NF18200
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18200_high_7
NF18200_high_7
[»] chr5 (19 HSPs)
chr5 (18-364)||(5947714-5948069)
chr5 (481-544)||(5948118-5948180)
chr5 (19-104)||(24992302-24992387)
chr5 (19-104)||(38916414-38916499)
chr5 (19-71)||(32017259-32017311)
chr5 (44-101)||(2825311-2825368)
chr5 (19-104)||(27579594-27579678)
chr5 (19-104)||(39776643-39776728)
chr5 (19-63)||(31197854-31197898)
chr5 (19-74)||(18998730-18998785)
chr5 (19-73)||(4671253-4671307)
chr5 (40-114)||(24916433-24916507)
chr5 (19-104)||(978090-978175)
chr5 (19-71)||(3422374-3422429)
chr5 (353-382)||(5948066-5948095)
chr5 (19-104)||(8086194-8086279)
chr5 (19-104)||(33587633-33587718)
chr5 (19-71)||(33387266-33387318)
chr5 (19-71)||(37495656-37495708)
[»] chr6 (14 HSPs)
chr6 (19-104)||(15337501-15337586)
chr6 (19-71)||(4440896-4440948)
chr6 (19-71)||(19240756-19240808)
chr6 (19-104)||(31869721-31869806)
chr6 (19-102)||(3623874-3623956)
chr6 (19-104)||(4147944-4148029)
chr6 (19-104)||(22054785-22054870)
chr6 (19-64)||(23158073-23158118)
chr6 (19-104)||(28477766-28477851)
chr6 (19-104)||(29693896-29693981)
chr6 (19-104)||(29790219-29790304)
chr6 (19-104)||(32414843-32414928)
chr6 (19-71)||(10298737-10298789)
chr6 (19-71)||(24624105-24624157)
[»] chr4 (27 HSPs)
chr4 (19-102)||(29051699-29051782)
chr4 (19-104)||(2571046-2571131)
chr4 (19-119)||(7614613-7614713)
chr4 (19-101)||(56297866-56297948)
chr4 (19-104)||(2760891-2760976)
chr4 (19-102)||(17610295-17610378)
chr4 (19-114)||(36523132-36523227)
chr4 (19-114)||(39307699-39307794)
chr4 (19-88)||(26125737-26125806)
chr4 (20-101)||(56079998-56080079)
chr4 (19-71)||(3037026-3037078)
chr4 (19-71)||(27407783-27407835)
chr4 (19-79)||(29586009-29586068)
chr4 (19-66)||(14144621-14144668)
chr4 (19-70)||(19903814-19903865)
chr4 (19-114)||(44232241-44232336)
chr4 (19-61)||(34652211-34652253)
chr4 (19-102)||(51355202-51355287)
chr4 (19-104)||(35381058-35381143)
chr4 (19-104)||(35686386-35686471)
chr4 (19-104)||(38416814-38416899)
chr4 (19-72)||(50815006-50815059)
chr4 (28-104)||(27755732-27755808)
chr4 (19-71)||(29830389-29830441)
chr4 (19-71)||(47386450-47386502)
chr4 (27-71)||(50685370-50685414)
chr4 (19-71)||(54330854-54330906)
[»] chr2 (21 HSPs)
chr2 (19-104)||(11931704-11931789)
chr2 (19-102)||(16865069-16865152)
chr2 (19-104)||(24251973-24252058)
chr2 (19-110)||(43444704-43444795)
chr2 (19-114)||(9006948-9007043)
chr2 (19-74)||(38291995-38292050)
chr2 (19-104)||(7799860-7799945)
chr2 (19-71)||(6223112-6223164)
chr2 (19-63)||(19262734-19262778)
chr2 (34-106)||(34248337-34248409)
chr2 (19-114)||(7608052-7608147)
chr2 (19-94)||(32886929-32887004)
chr2 (25-71)||(22839097-22839143)
chr2 (19-104)||(5405009-5405094)
chr2 (21-74)||(7666133-7666186)
chr2 (19-104)||(8042186-8042271)
chr2 (19-104)||(19141230-19141315)
chr2 (19-104)||(44365170-44365255)
chr2 (24-104)||(30548845-30548925)
chr2 (19-71)||(31610817-31610869)
chr2 (19-111)||(36072180-36072272)
[»] scaffold0225 (1 HSPs)
scaffold0225 (19-100)||(8997-9078)
[»] scaffold0029 (1 HSPs)
scaffold0029 (19-100)||(138194-138275)
[»] scaffold0262 (1 HSPs)
scaffold0262 (19-100)||(22797-22878)
[»] chr7 (21 HSPs)
chr7 (19-104)||(3785533-3785618)
chr7 (19-104)||(6766714-6766799)
chr7 (20-104)||(4131668-4131752)
chr7 (19-65)||(38767223-38767269)
chr7 (21-102)||(44594685-44594766)
chr7 (19-71)||(7169172-7169224)
chr7 (19-103)||(16870644-16870728)
chr7 (19-74)||(8683861-8683916)
chr7 (19-104)||(7438916-7439001)
chr7 (19-104)||(20885116-20885201)
chr7 (19-104)||(27045572-27045657)
chr7 (19-104)||(28061679-28061764)
chr7 (19-104)||(32431522-32431607)
chr7 (19-104)||(36341633-36341718)
chr7 (19-104)||(36623321-36623406)
chr7 (19-104)||(38852011-38852096)
chr7 (19-104)||(47156040-47156125)
chr7 (39-79)||(26980085-26980125)
chr7 (40-104)||(35570239-35570303)
chr7 (19-71)||(40090082-40090134)
chr7 (17-73)||(42662231-42662286)
[»] scaffold0595 (1 HSPs)
scaffold0595 (19-71)||(3994-4046)
[»] chr8 (13 HSPs)
chr8 (19-71)||(33700237-33700289)
chr8 (19-114)||(18044428-18044523)
chr8 (19-69)||(3370420-3370470)
chr8 (19-104)||(616796-616881)
chr8 (19-104)||(623189-623274)
chr8 (54-95)||(3448180-3448221)
chr8 (19-104)||(14237293-14237378)
chr8 (19-104)||(32998463-32998548)
chr8 (19-104)||(40494397-40494482)
chr8 (19-71)||(4270256-4270308)
chr8 (19-71)||(5878362-5878414)
chr8 (19-59)||(38957228-38957268)
chr8 (19-71)||(41263856-41263908)
[»] chr3 (16 HSPs)
chr3 (19-71)||(44561830-44561882)
chr3 (19-104)||(42761647-42761732)
chr3 (19-71)||(27813452-27813504)
chr3 (19-102)||(15332970-15333053)
chr3 (19-104)||(6910347-6910432)
chr3 (19-104)||(13499499-13499584)
chr3 (19-104)||(41252927-41253012)
chr3 (19-104)||(42490360-42490445)
chr3 (19-79)||(17643769-17643829)
chr3 (19-71)||(20765242-20765294)
chr3 (19-71)||(25527450-25527502)
chr3 (19-71)||(27334895-27334947)
chr3 (26-74)||(30057342-30057390)
chr3 (19-71)||(39866305-39866357)
chr3 (19-71)||(41751574-41751626)
chr3 (19-67)||(41943264-41943312)
[»] chr1 (14 HSPs)
chr1 (19-119)||(36757650-36757750)
chr1 (19-102)||(3485371-3485454)
chr1 (19-69)||(34634955-34635005)
chr1 (19-120)||(11641231-11641332)
chr1 (19-104)||(15382590-15382675)
chr1 (19-104)||(28030845-28030930)
chr1 (19-104)||(38153441-38153526)
chr1 (21-101)||(16689840-16689920)
chr1 (19-71)||(30385309-30385361)
chr1 (19-102)||(44644519-44644602)
chr1 (19-104)||(16120604-16120689)
chr1 (19-76)||(48375043-48375100)
chr1 (21-65)||(6406118-6406162)
chr1 (19-71)||(6766418-6766470)
[»] scaffold0099 (1 HSPs)
scaffold0099 (19-71)||(28816-28868)


Alignment Details
Target: chr5 (Bit Score: 264; Significance: 1e-147; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 18 - 364
Target Start/End: Original strand, 5947714 - 5948069
Alignment:
Q  18 gatttgtatttatatgttagctaaaaaatattgtcaaagtaagttatgtgaataatgtatatcgtgaaaatgtgacatgtattttgagatggatggatta 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||    
T  5947714 gatttgtatttatatgttagctaaaaaatattgtcaaagtaagttatgtgaataatgtatatcgtgaaaatgtgacatgtattttaaaatggatggatta 5947813  T
Q  118 tatgattaatcattgttttaat--------aagaggtatccatgtttaatgtcgaattcaccttgaataaacacaattttcacctgtgaaggaaatctat 209  Q
    ||||||||||||||||||||||        ||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5947814 tatgattaatcattgttttaatcccgctataagagatatccatgtttagtgtcgaattcaccttgaataaacacaattttcacctgtgaaggaaatctat 5947913  T
Q  210 aaagaaatcattttcattaaagagataaaattcttttacctttttcaa-ttatgtgtaaatcatatgagttgttttcaaacataatatcatttacatgca 308  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| |    
T  5947914 aaagaaatcattttcattaaagagataaaattcttttacctttttcaatttatttgtaaatcatatgagttgttttcaaacataatatcatttacatgta 5948013  T
Q  309 attgccaagattaattctgagttgnnnnnnnnnctttaagaaattctttgagtctt 364  Q
    ||||||||||||||||||||||||          ||||||||||||||||||||||    
T  5948014 attgccaagattaattctgagttgttgttttttttttaagaaattctttgagtctt 5948069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 481 - 544
Target Start/End: Original strand, 5948118 - 5948180
Alignment:
Q  481 tgttttgttattcctattgattcttttgcttttatattgaatttattgatgtgatgatgtccat 544  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||    
T  5948118 tgttttgttattc-tattgattcttttgcttttatattgaatttattgatgttatgatgtccat 5948180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 19 - 104
Target Start/End: Original strand, 24992302 - 24992387
Alignment:
Q  19 atttgtatttatatgttagctaaaaaatattgtcaaagtaagttatgtgaataatgtatatcgtgaaaatgtgacatgtattttga 104  Q
    |||||||||||||  |||| |||||||||| ||||||||||| |||||||||| || | || || ||| | |||||||||||||||    
T  24992302 atttgtatttataaattagttaaaaaatatggtcaaagtaagctatgtgaatagtgcacattgtaaaactatgacatgtattttga 24992387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 19 - 104
Target Start/End: Original strand, 38916414 - 38916499
Alignment:
Q  19 atttgtatttatatgttagctaaaaaatattgtcaaagtaagttatgtgaataatgtatatcgtgaaaatgtgacatgtattttga 104  Q
    ||||||||||||||||||| |||||| ||| ||||||| |||| ||||||||| || |||  |  |||||| ||||||||||||||    
T  38916414 atttgtatttatatgttagttaaaaagtatggtcaaagcaagtcatgtgaatagtgcatactgcaaaaatgcgacatgtattttga 38916499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 19 - 71
Target Start/End: Complemental strand, 32017311 - 32017259
Alignment:
Q  19 atttgtatttatatgttagctaaaaaatattgtcaaagtaagttatgtgaata 71  Q
    |||||||||||||| |||| ||||||||||  |||||||||||||||||||||    
T  32017311 atttgtatttatatattagttaaaaaatatgatcaaagtaagttatgtgaata 32017259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 44 - 101
Target Start/End: Original strand, 2825311 - 2825368
Alignment:
Q  44 aatattgtcaaagtaagttatgtgaataatgtatatcgtgaaaatgtgacatgtattt 101  Q
    |||||| |||||||||||||||||||||||| |||| || |||||| || ||||||||    
T  2825311 aatattatcaaagtaagttatgtgaataatgcatattgtcaaaatgcgatatgtattt 2825368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 19 - 104
Target Start/End: Original strand, 27579594 - 27579678
Alignment:
Q  19 atttgtatttatatgttagctaaaaaatattgtcaaagtaagttatgtgaataatgtatatcgtgaaaatgtgacatgtattttga 104  Q
    |||||||||||||| |||| |||||||||| || ||||||||| || ||||||||  | |||   |||||||||||||||||||||    
T  27579594 atttgtatttatatattagttaaaaaatatagttaaagtaagtcat-tgaataatacacatcacaaaaatgtgacatgtattttga 27579678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 19 - 104
Target Start/End: Complemental strand, 39776728 - 39776643
Alignment:
Q  19 atttgtatttatatgttagctaaaaaatattgtcaaagtaagttatgtgaataatgtatatcgtgaaaatgtgacatgtattttga 104  Q
    ||||||||||||||||||| |||||| ||  |||||| ||||||||||||||| |||| || |  |||||  || |||||||||||    
T  39776728 atttgtatttatatgttagttaaaaagtacggtcaaaataagttatgtgaatagtgtacattgcaaaaatacgaaatgtattttga 39776643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 19 - 63
Target Start/End: Original strand, 31197854 - 31197898
Alignment:
Q  19 atttgtatttatatgttagctaaaaaatattgtcaaagtaagtta 63  Q
    |||||||||||||| |||| |||||| ||||||||||||||||||    
T  31197854 atttgtatttatattttagttaaaaattattgtcaaagtaagtta 31197898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 74
Target Start/End: Complemental strand, 18998785 - 18998730
Alignment:
Q  19 atttgtatttatatgttagctaaaaaatattgtcaaagtaagttatgtgaataatg 74  Q
    |||||||||||||| |||| |||||||||| || |||||||  |||||||||||||    
T  18998785 atttgtatttatatattagttaaaaaatatggttaaagtaaactatgtgaataatg 18998730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 19 - 73
Target Start/End: Complemental strand, 4671307 - 4671253
Alignment:
Q  19 atttgtatttatatgttagctaaaaaatattgtcaaagtaagttatgtgaataat 73  Q
    |||||||||||||| | || ||||||||||   ||||||||||||||||||||||    
T  4671307 atttgtatttatatatcagttaaaaaatatgaacaaagtaagttatgtgaataat 4671253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 40 - 114
Target Start/End: Original strand, 24916433 - 24916507
Alignment:
Q  40 aaaaaatattgtcaaagtaagttatgtgaataatgtatatcgtgaaaatgtgacatgtattttgagatggatgga 114  Q
    ||||||||| ||||||||||| |||||||||| |  | || || ||| ||||||||||||||||| | |||||||    
T  24916433 aaaaaatatggtcaaagtaagctatgtgaatagtacacattgtaaaattgtgacatgtattttgaaacggatgga 24916507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 104
Target Start/End: Complemental strand, 978175 - 978090
Alignment:
Q  19 atttgtatttatatgttagctaaaaaatattgtcaaagtaagttatgtgaataatgtatatcgtgaaaatgtgacatgtattttga 104  Q
    |||||||||||||| |||| |||||| ||| |||||||||||| | ||||||| || | || |  |||||  ||||||||||||||    
T  978175 atttgtatttatatattagttaaaaagtatggtcaaagtaagtcaagtgaatagtgcacattgcaaaaattggacatgtattttga 978090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 71
Target Start/End: Original strand, 3422374 - 3422429
Alignment:
Q  19 atttgtatttatatgttagctaaaaaa---tattgtcaaagtaagttatgtgaata 71  Q
    |||||||||||||| |||| |||||||   ||| ||||||||||||||||||||||    
T  3422374 atttgtatttatatattagttaaaaaaaaatatagtcaaagtaagttatgtgaata 3422429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 353 - 382
Target Start/End: Original strand, 5948066 - 5948095
Alignment:
Q  353 tctttgagtcttgtaaggttcaagtgacaa 382  Q
    ||||||||||||||||||||||||||||||    
T  5948066 tctttgagtcttgtaaggttcaagtgacaa 5948095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 104
Target Start/End: Original strand, 8086194 - 8086279
Alignment:
Q  19 atttgtatttatatgttagctaaaaaatattgtcaaagtaagttatgtgaataatgtatatcgtgaaaatgtgacatgtattttga 104  Q
    |||||||||||||| |||| |||||| ||| |||||||||||| | ||||||| || | || |  |||||  ||||||||||||||    
T  8086194 atttgtatttatatattagttaaaaagtatagtcaaagtaagtcaagtgaatagtgcacattgcaaaaattggacatgtattttga 8086279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 104
Target Start/End: Original strand, 33587633 - 33587718
Alignment:
Q  19 atttgtatttatatgttagctaaaaaatattgtcaaagtaagttatgtgaataatgtatatcgtgaaaatgtgacatgtattttga 104  Q
    |||||||||||||  |||| |||||||||| |||||||||||| |  ||||||||| | || |  |||||  ||||||||||||||    
T  33587633 atttgtatttatagattagttaaaaaatatggtcaaagtaagtcaaatgaataatgcacattgcaaaaattggacatgtattttga 33587718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 19 - 71
Target Start/End: Complemental strand, 33387318 - 33387266
Alignment:
Q  19 atttgtatttatatgttagctaaaaaatattgtcaaagtaagttatgtgaata 71  Q
    |||||||||||||| |||| |||||| ||| |||||||||||| | |||||||    
T  33387318 atttgtatttatatattagttaaaaagtatagtcaaagtaagtcaagtgaata 33387266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 19 - 71
Target Start/End: Complemental strand, 37495708 - 37495656
Alignment:
Q  19 atttgtatttatatgttagctaaaaaatattgtcaaagtaagttatgtgaata 71  Q
    |||||||||||||| |||| ||||||||||  |||||||||| |||| |||||    
T  37495708 atttgtatttatatattagttaaaaaatatgatcaaagtaagatatgagaata 37495656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 54; Significance: 9e-22; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 19 - 104
Target Start/End: Complemental strand, 15337586 - 15337501
Alignment:
Q  19 atttgtatttatatgttagctaaaaaatattgtcaaagtaagttatgtgaataatgtatatcgtgaaaatgtgacatgtattttga 104  Q
    |||||||||||||| |||| |||||||||| ||||||||||||||||||||||||| |||| || ||| ||||| |||||||||||    
T  15337586 atttgtatttatatattagttaaaaaatatggtcaaagtaagttatgtgaataatgcatattgtaaaattgtgaaatgtattttga 15337501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 19 - 71
Target Start/End: Complemental strand, 4440948 - 4440896
Alignment:
Q  19 atttgtatttatatgttagctaaaaaatattgtcaaagtaagttatgtgaata 71  Q
    |||||||||||||||||| ||||||| ||| ||||||||||||||| ||||||    
T  4440948 atttgtatttatatgttacctaaaaagtatggtcaaagtaagttatatgaata 4440896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 19 - 71
Target Start/End: Original strand, 19240756 - 19240808
Alignment:
Q  19 atttgtatttatatgttagctaaaaaatattgtcaaagtaagttatgtgaata 71  Q
    |||||||||||||| |||| |||||||||| |||||| |||||||||||||||    
T  19240756 atttgtatttatatattagttaaaaaatatggtcaaaataagttatgtgaata 19240808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 19 - 104
Target Start/End: Complemental strand, 31869806 - 31869721
Alignment:
Q  19 atttgtatttatatgttagctaaaaaatattgtcaaagtaagttatgtgaataatgtatatcgtgaaaatgtgacatgtattttga 104  Q
    |||||||||||||| |||| ||||||| || |||||||||| ||||| ||||| |||| || || |||  | ||||||||||||||    
T  31869806 atttgtatttatatattagttaaaaaaaatggtcaaagtaaattatgggaatagtgtacattgtaaaatcgcgacatgtattttga 31869721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 102
Target Start/End: Original strand, 3623874 - 3623956
Alignment:
Q  19 atttgtatttatatgttagctaaaaaatattgtcaaagtaagttatgtgaataatgtatatcgtgaaaatgtgacatgtatttt 102  Q
    |||||||||||||| |||| |||||| ||| ||||||||||  ||| |||||||||||||| || ||| || ||||| ||||||    
T  3623874 atttgtatttatatattagttaaaaa-tatggtcaaagtaaactatatgaataatgtatattgtaaaactgcgacatatatttt 3623956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 104
Target Start/End: Complemental strand, 4148029 - 4147944
Alignment:
Q  19 atttgtatttatatgttagctaaaaaatattgtcaaagtaagttatgtgaataatgtatatcgtgaaaatgtgacatgtattttga 104  Q
    |||||||||||||  |||| |||||| ||| |||||||||||| | |||||||||| | || |  |||||  ||||||||||||||    
T  4148029 atttgtatttatacattagttaaaaagtatggtcaaagtaagtcaagtgaataatgcacattgcaaaaattggacatgtattttga 4147944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 104
Target Start/End: Complemental strand, 22054870 - 22054785
Alignment:
Q  19 atttgtatttatatgttagctaaaaaatattgtcaaagtaagttatgtgaataatgtatatcgtgaaaatgtgacatgtattttga 104  Q
    |||||||||||||  |||| |||||| ||| |||||||||||| | ||||||| || |||| |  |||||  ||||||||||||||    
T  22054870 atttgtatttatacattagttaaaaagtatggtcaaagtaagtcaagtgaatagtgcatattgcaaaaattggacatgtattttga 22054785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 64
Target Start/End: Original strand, 23158073 - 23158118
Alignment:
Q  19 atttgtatttatatgttagctaaaaaatattgtcaaagtaagttat 64  Q
    |||||||||||||| |||| |||||||| | |||||||||||||||    
T  23158073 atttgtatttatatattagttaaaaaatgtggtcaaagtaagttat 23158118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 104
Target Start/End: Complemental strand, 28477851 - 28477766
Alignment:
Q  19 atttgtatttatatgttagctaaaaaatattgtcaaagtaagttatgtgaataatgtatatcgtgaaaatgtgacatgtattttga 104  Q
    |||||||||||||| |||| |||||| ||| ||||||| |||| ||||||||| |  | || |  ||| |||||||||||||||||    
T  28477851 atttgtatttatatattagttaaaaattatggtcaaagcaagtcatgtgaatagtacacattgcaaaattgtgacatgtattttga 28477766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 104
Target Start/End: Complemental strand, 29693981 - 29693896
Alignment:
Q  19 atttgtatttatatgttagctaaaaaatattgtcaaagtaagttatgtgaataatgtatatcgtgaaaatgtgacatgtattttga 104  Q
    |||||||||||||| |||| |||||| ||| ||||||| |||| ||||||||| |  | || |  ||| |||||||||||||||||    
T  29693981 atttgtatttatatattagttaaaaattatggtcaaagcaagtcatgtgaatagtacacattgcaaaattgtgacatgtattttga 29693896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 104
Target Start/End: Complemental strand, 29790304 - 29790219
Alignment:
Q  19 atttgtatttatatgttagctaaaaaatattgtcaaagtaagttatgtgaataatgtatatcgtgaaaatgtgacatgtattttga 104  Q
    |||||||||||||| |||| |||||| ||| ||| |||||||| ||||||||| | || || |  ||| || ||||||||||||||    
T  29790304 atttgtatttatatattagttaaaaattatggtccaagtaagtcatgtgaatagtatacattgcaaaattgcgacatgtattttga 29790219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 104
Target Start/End: Original strand, 32414843 - 32414928
Alignment:
Q  19 atttgtatttatatgttagctaaaaaatattgtcaaagtaagttatgtgaataatgtatatcgtgaaaatgtgacatgtattttga 104  Q
    |||||||||||||| |||| |||||| ||| |||||||||||| | ||||||| || | || |  |||||  ||||||||||||||    
T  32414843 atttgtatttatatattagttaaaaagtatggtcaaagtaagtcaagtgaatagtgcacattgaaaaaattggacatgtattttga 32414928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 19 - 71
Target Start/End: Original strand, 10298737 - 10298789
Alignment:
Q  19 atttgtatttatatgttagctaaaaaatattgtcaaagtaagttatgtgaata 71  Q
    |||||||||||||| ||||  ||||||||| |||||| |||| ||||||||||    
T  10298737 atttgtatttatatattagtgaaaaaatatggtcaaattaagctatgtgaata 10298789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 19 - 71
Target Start/End: Original strand, 24624105 - 24624157
Alignment:
Q  19 atttgtatttatatgttagctaaaaaatattgtcaaagtaagttatgtgaata 71  Q
    |||||||||||||| |||| |||||| ||| |||||||||||| | |||||||    
T  24624105 atttgtatttatatattagttaaaaagtatggtcaaagtaagtcaagtgaata 24624157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 1e-20; HSPs: 27)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 19 - 102
Target Start/End: Complemental strand, 29051782 - 29051699
Alignment:
Q  19 atttgtatttatatgttagctaaaaaatattgtcaaagtaagttatgtgaataatgtatatcgtgaaaatgtgacatgtatttt 102  Q
    |||||||||||||| |||| |||||||||| |||||||||||||||||||||||||||||| || ||| ||  |||||||||||    
T  29051782 atttgtatttatatattagttaaaaaatatggtcaaagtaagttatgtgaataatgtatattgtaaaattgcaacatgtatttt 29051699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 19 - 104
Target Start/End: Original strand, 2571046 - 2571131
Alignment:
Q  19 atttgtatttatatgttagctaaaaaatattgtcaaagtaagttatgtgaataatgtatatcgtgaaaatgtgacatgtattttga 104  Q
    |||||||||||||| |||| |||||||||| |||||| ||| | |||||||||||| | ||  | |||||||||||||||||||||    
T  2571046 atttgtatttatatattagttaaaaaatatagtcaaaataaatcatgtgaataatgcacattataaaaatgtgacatgtattttga 2571131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 19 - 119
Target Start/End: Complemental strand, 7614713 - 7614613
Alignment:
Q  19 atttgtatttatatgttagctaaaaaatattgtcaaagtaagttatgtgaataatgtatatcgtgaaaatgtgacatgtattttgagatggatggattat 118  Q
    |||||||||||||| |||| |||||||||| |||||| ||||| |||||| |||| ||||| || ||| |  |||||||||||||| | ||||||| |||    
T  7614713 atttgtatttatatattagttaaaaaatatggtcaaaataagtcatgtgattaatatatattgtaaaattacgacatgtattttgaaacggatggagtat 7614614  T
Q  119 a 119  Q
    |    
T  7614613 a 7614613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 19 - 101
Target Start/End: Original strand, 56297866 - 56297948
Alignment:
Q  19 atttgtatttatatgttagctaaaaaatattgtcaaagtaagttatgtgaataatgtatatcgtgaaaatgtgacatgtattt 101  Q
    |||||||||||||| |||| ||| |||||| ||||||  ||||||||||||||||||| || || |||||  |||||||||||    
T  56297866 atttgtatttatatattagttaataaatatggtcaaaacaagttatgtgaataatgtacattgtaaaaatacgacatgtattt 56297948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 19 - 104
Target Start/End: Original strand, 2760891 - 2760976
Alignment:
Q  19 atttgtatttatatgttagctaaaaaatattgtcaaagtaagttatgtgaataatgtatatcgtgaaaatgtgacatgtattttga 104  Q
    |||||||||||||| |||| |||||||||| |||||||||||| | ||||||| || | || || |||||  ||||||||||||||    
T  2760891 atttgtatttatatattagttaaaaaatatggtcaaagtaagtcaagtgaatagtgcacattgtaaaaattggacatgtattttga 2760976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 19 - 102
Target Start/End: Complemental strand, 17610378 - 17610295
Alignment:
Q  19 atttgtatttatatgttagctaaaaaatattgtcaaagtaagttatgtgaataatgtatatcgtgaaaatgtgacatgtatttt 102  Q
    |||||||||||||  ||||||||||||||| |||||||||||| | ||||||| || |||| |  |||||  ||||||||||||    
T  17610378 atttgtatttatacattagctaaaaaatatggtcaaagtaagtcaagtgaatagtgcatattgcaaaaattggacatgtatttt 17610295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 19 - 114
Target Start/End: Original strand, 36523132 - 36523227
Alignment:
Q  19 atttgtatttatatgttagctaaaaaatattgtcaaagtaagttatgtgaataatgtatatcgtgaaaatgtgacatgtattttgagatggatgga 114  Q
    |||||||||||||| |||| |||||| ||| |||||||||||| |||| |||| || |||| |  |||||| ||||| |||||||| | |||||||    
T  36523132 atttgtatttatatattagttaaaaagtatagtcaaagtaagtcatgtaaatagtgcatattgcaaaaatgcgacatatattttgaaacggatgga 36523227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 19 - 114
Target Start/End: Complemental strand, 39307794 - 39307699
Alignment:
Q  19 atttgtatttatatgttagctaaaaaatattgtcaaagtaagttatgtgaataatgtatatcgtgaaaatgtgacatgtattttgagatggatgga 114  Q
    |||||||||||||| |||| |||||| ||   ||||||||||| |||||||||  |||||| |  |||||| |||||||||||||| | |||||||    
T  39307794 atttgtatttatatattagttaaaaagtagcatcaaagtaagtcatgtgaatagggtatattgcaaaaatgcgacatgtattttgaaacggatgga 39307699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 19 - 88
Target Start/End: Complemental strand, 26125806 - 26125737
Alignment:
Q  19 atttgtatttatatgttagctaaaaaatattgtcaaagtaagttatgtgaataatgtatatcgtgaaaat 88  Q
    |||||||||||||  |||| |||||||||| |||||||||||| | |||||||||| |||| || |||||    
T  26125806 atttgtatttatacattagttaaaaaatatggtcaaagtaagtcaagtgaataatgcatattgtaaaaat 26125737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 20 - 101
Target Start/End: Complemental strand, 56080079 - 56079998
Alignment:
Q  20 tttgtatttatatgttagctaaaaaatattgtcaaagtaagttatgtgaataatgtatatcgtgaaaatgtgacatgtattt 101  Q
    ||||||| ||||| |||| |||||||||| |||||||||| ||||| ||||| || | ||  | ||||||||||||||||||    
T  56080079 tttgtatgtatatattagttaaaaaatatagtcaaagtaaattatgcgaatagtgcacattatcaaaatgtgacatgtattt 56079998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 19 - 71
Target Start/End: Complemental strand, 3037078 - 3037026
Alignment:
Q  19 atttgtatttatatgttagctaaaaaatattgtcaaagtaagttatgtgaata 71  Q
    |||||||||||||| |||| |||||| ||| |||||||||||| |||||||||    
T  3037078 atttgtatttatatattagttaaaaagtatggtcaaagtaagtcatgtgaata 3037026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 19 - 71
Target Start/End: Original strand, 27407783 - 27407835
Alignment:
Q  19 atttgtatttatatgttagctaaaaaatattgtcaaagtaagttatgtgaata 71  Q
    |||||||||||||| |||| |||||| ||  ||||||||||||||||||||||    
T  27407783 atttgtatttatatattagttaaaaagtagggtcaaagtaagttatgtgaata 27407835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 19 - 79
Target Start/End: Original strand, 29586009 - 29586068
Alignment:
Q  19 atttgtatttatatgttagctaaaaaatattgtcaaagtaagttatgtgaataatgtatat 79  Q
    ||||||||||| || |||  |||||||||| |||||||||||||||||||||| |||||||    
T  29586009 atttgtatttacatattaattaaaaaatat-gtcaaagtaagttatgtgaatagtgtatat 29586068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 66
Target Start/End: Original strand, 14144621 - 14144668
Alignment:
Q  19 atttgtatttatatgttagctaaaaaatattgtcaaagtaagttatgt 66  Q
    |||||||||||||| |||| |||||||| | |||||||||||||||||    
T  14144621 atttgtatttatatattagttaaaaaatgtggtcaaagtaagttatgt 14144668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 70
Target Start/End: Original strand, 19903814 - 19903865
Alignment:
Q  19 atttgtatttatatgttagctaaaaaatattgtcaaagtaagttatgtgaat 70  Q
    |||||||||||||| |||| ||||| |||| |||||||||| ||||||||||    
T  19903814 atttgtatttatatattagttaaaatatatggtcaaagtaaattatgtgaat 19903865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 114
Target Start/End: Original strand, 44232241 - 44232336
Alignment:
Q  19 atttgtatttatatgttagctaaaaaatattgtcaaagtaagttatgtgaataatgtatatcgtgaaaatgtgacatgtattttgagatggatgga 114  Q
    |||||||||||||| |||| |||||| ||| |||||||||||| | ||||||| || | || |  |||||  |||||||||||||| | |||||||    
T  44232241 atttgtatttatatattagttaaaaagtatggtcaaagtaagtcaagtgaatagtgcacattgcaaaaattagacatgtattttgaaacggatgga 44232336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 19 - 61
Target Start/End: Original strand, 34652211 - 34652253
Alignment:
Q  19 atttgtatttatatgttagctaaaaaatattgtcaaagtaagt 61  Q
    ||||||||||||||||||| |||||||||| ||| ||||||||    
T  34652211 atttgtatttatatgttagttaaaaaatatggtcgaagtaagt 34652253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 19 - 102
Target Start/End: Original strand, 51355202 - 51355287
Alignment:
Q  19 atttgtatttatatgttagctaaaaa--atattgtcaaagtaagttatgtgaataatgtatatcgtgaaaatgtgacatgtatttt 102  Q
    |||||||||||||| |||||||||||  |||| |||||||||| |||  ||| ||||| |||| || ||| || ||||||||||||    
T  51355202 atttgtatttatatattagctaaaaattatatggtcaaagtaaattacatgagtaatgcatattgttaaagtgcgacatgtatttt 51355287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 104
Target Start/End: Original strand, 35381058 - 35381143
Alignment:
Q  19 atttgtatttatatgttagctaaaaaatattgtcaaagtaagttatgtgaataatgtatatcgtgaaaatgtgacatgtattttga 104  Q
    |||||||||||||| |||| |||||| ||| |||||||||||| |  |||||| || | || || |||||  ||||||||||||||    
T  35381058 atttgtatttatatattagttaaaaagtatggtcaaagtaagtcaaatgaatagtgcacattgtaaaaattggacatgtattttga 35381143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 104
Target Start/End: Complemental strand, 35686471 - 35686386
Alignment:
Q  19 atttgtatttatatgttagctaaaaaatattgtcaaagtaagttatgtgaataatgtatatcgtgaaaatgtgacatgtattttga 104  Q
    |||||||||||||  |||| |||||| ||| |||||||||||||| ||||||| || | || |  |||||  ||||||||||||||    
T  35686471 atttgtatttatacattagttaaaaagtatggtcaaagtaagttaagtgaatagtgcacattgcaaaaattggacatgtattttga 35686386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 104
Target Start/End: Original strand, 38416814 - 38416899
Alignment:
Q  19 atttgtatttatatgttagctaaaaaatattgtcaaagtaagttatgtgaataatgtatatcgtgaaaatgtgacatgtattttga 104  Q
    |||||||||||||| |||| |||||| ||| |||||||||||| | ||||||| || | || |  |||||  ||||||||||||||    
T  38416814 atttgtatttatatattagttaaaaagtatggtcaaagtaagtcaagtgaatagtgcacattgcaaaaattggacatgtattttga 38416899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 72
Target Start/End: Complemental strand, 50815059 - 50815006
Alignment:
Q  19 atttgtatttatatgttagctaaaaaatattgtcaaagtaagttatgtgaataa 72  Q
    |||||||||||||| | || |||||||||   ||||||||||||||||||||||    
T  50815059 atttgtatttatatataagttaaaaaataaaatcaaagtaagttatgtgaataa 50815006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 28 - 104
Target Start/End: Complemental strand, 27755808 - 27755732
Alignment:
Q  28 tatatgttagctaaaaaatattgtcaaagtaagttatgtgaataatgtatatcgtgaaaatgtgacatgtattttga 104  Q
    |||||||||| |||||| ||| |||||| |||||||| |||| |||||| ||    |||||| ||||||||||||||    
T  27755808 tatatgttagttaaaaagtatggtcaaaataagttatatgaacaatgtacattacaaaaatgcgacatgtattttga 27755732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 19 - 71
Target Start/End: Complemental strand, 29830441 - 29830389
Alignment:
Q  19 atttgtatttatatgttagctaaaaaatattgtcaaagtaagttatgtgaata 71  Q
    |||||||||||||| |||| |||||| ||| |||||||||||| | |||||||    
T  29830441 atttgtatttatatattagttaaaaagtatggtcaaagtaagtcaagtgaata 29830389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 19 - 71
Target Start/End: Original strand, 47386450 - 47386502
Alignment:
Q  19 atttgtatttatatgttagctaaaaaatattgtcaaagtaagttatgtgaata 71  Q
    |||||||||||||  |||| |||||||||| |||||||||||| | |||||||    
T  47386450 atttgtatttatacattagttaaaaaatatggtcaaagtaagtcaagtgaata 47386502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 27 - 71
Target Start/End: Original strand, 50685370 - 50685414
Alignment:
Q  27 ttatatgttagctaaaaaatattgtcaaagtaagttatgtgaata 71  Q
    |||||| |||| |||||||||| ||||||||||| ||||||||||    
T  50685370 ttatatattagttaaaaaatatggtcaaagtaagatatgtgaata 50685414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 19 - 71
Target Start/End: Original strand, 54330854 - 54330906
Alignment:
Q  19 atttgtatttatatgttagctaaaaaatattgtcaaagtaagttatgtgaata 71  Q
    |||||||||||||| |||| |||||| ||| |||||||||||| | |||||||    
T  54330854 atttgtatttatatattagttaaaaagtatggtcaaagtaagtcaagtgaata 54330906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 2e-19; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 19 - 104
Target Start/End: Complemental strand, 11931789 - 11931704
Alignment:
Q  19 atttgtatttatatgttagctaaaaaatattgtcaaagtaagttatgtgaataatgtatatcgtgaaaatgtgacatgtattttga 104  Q
    |||||||||||||| |||| |||||||||| ||||||||||||||| ||||||||| |||| || ||| || ||||||||||||||    
T  11931789 atttgtatttatatattagttaaaaaatatggtcaaagtaagttatatgaataatgcatattgtaaaattgcgacatgtattttga 11931704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 19 - 102
Target Start/End: Complemental strand, 16865152 - 16865069
Alignment:
Q  19 atttgtatttatatgttagctaaaaaatattgtcaaagtaagttatgtgaataatgtatatcgtgaaaatgtgacatgtatttt 102  Q
    ||||||||||||||||||| |||||| ||| |||||||||||| || |||||| ||||||| || |||||| ||||||||||||    
T  16865152 atttgtatttatatgttagttaaaaagtatcgtcaaagtaagtcatatgaatattgtatattgtaaaaatgcgacatgtatttt 16865069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 19 - 104
Target Start/End: Complemental strand, 24252058 - 24251973
Alignment:
Q  19 atttgtatttatatgttagctaaaaaatattgtcaaagtaagttatgtgaataatgtatatcgtgaaaatgtgacatgtattttga 104  Q
    |||||||||||||| |||| |||||||||| |||||| |||||||||||||||||  |||| || ||| ||||| |||||||||||    
T  24252058 atttgtatttatatattagttaaaaaatatggtcaaaataagttatgtgaataatacatattgtaaaattgtgaaatgtattttga 24251973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 19 - 110
Target Start/End: Original strand, 43444704 - 43444795
Alignment:
Q  19 atttgtatttatatgttagctaaaaaatattgtcaaagtaagttatgtgaataatgtatatcgtgaaaatgtgacatgtattttgagatgga 110  Q
    |||||||||||||| |||| |||||||||| ||||||| || |||||||||||||| | || || ||| || |||||||||||||| |||||    
T  43444704 atttgtatttatatattagttaaaaaatatggtcaaagaaaattatgtgaataatgcacattgtaaaattgcgacatgtattttgaaatgga 43444795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 19 - 114
Target Start/End: Original strand, 9006948 - 9007043
Alignment:
Q  19 atttgtatttatatgttagctaaaaaatattgtcaaagtaagttatgtgaataatgtatatcgtgaaaatgtgacatgtattttgagatggatgga 114  Q
    |||||||||||||  |||| |||||||||| ||||||||||| ||  ||||||||| | || || ||| || |||||||||||||| |||||||||    
T  9006948 atttgtatttataaattagttaaaaaatatggtcaaagtaagctacatgaataatgcacattgtaaaattgcgacatgtattttgaaatggatgga 9007043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 19 - 74
Target Start/End: Complemental strand, 38292050 - 38291995
Alignment:
Q  19 atttgtatttatatgttagctaaaaaatattgtcaaagtaagttatgtgaataatg 74  Q
    ||||||||||||||  ||| |||||||||| ||||||||||||||| |||||||||    
T  38292050 atttgtatttatatactagttaaaaaatatggtcaaagtaagttatctgaataatg 38291995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 19 - 104
Target Start/End: Complemental strand, 7799945 - 7799860
Alignment:
Q  19 atttgtatttatatgttagctaaaaaatattgtcaaagtaagttatgtgaataatgtatatcgtgaaaatgtgacatgtattttga 104  Q
    |||||||||||||| |||| |||||| ||  |||||||||||| ||||||||| || | || |  |||||| ||||||||||||||    
T  7799945 atttgtatttatatattagttaaaaagtagggtcaaagtaagtcatgtgaatagtgcacattgcaaaaatgcgacatgtattttga 7799860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 19 - 71
Target Start/End: Complemental strand, 6223164 - 6223112
Alignment:
Q  19 atttgtatttatatgttagctaaaaaatattgtcaaagtaagttatgtgaata 71  Q
    |||||||||||||| |||| |||||||||| |||||||||||| | |||||||    
T  6223164 atttgtatttatatattagttaaaaaatatggtcaaagtaagtcaagtgaata 6223112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 19 - 63
Target Start/End: Complemental strand, 19262778 - 19262734
Alignment:
Q  19 atttgtatttatatgttagctaaaaaatattgtcaaagtaagtta 63  Q
    |||||||||||||| |||| |||||||||| ||||||||||||||    
T  19262778 atttgtatttatatattagttaaaaaatatggtcaaagtaagtta 19262734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 34 - 106
Target Start/End: Complemental strand, 34248409 - 34248337
Alignment:
Q  34 ttagctaaaaaatattgtcaaagtaagttatgtgaataatgtatatcgtgaaaatgtgacatgtattttgaga 106  Q
    |||| |||||||||| ||||||||||| |||||||||| || ||||  | ||| |||||| ||||||||||||    
T  34248409 ttagttaaaaaatatggtcaaagtaagctatgtgaatagtgcatatattaaaattgtgacgtgtattttgaga 34248337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 114
Target Start/End: Complemental strand, 7608147 - 7608052
Alignment:
Q  19 atttgtatttatatgttagctaaaaaatattgtcaaagtaagttatgtgaataatgtatatcgtgaaaatgtgacatgtattttgagatggatgga 114  Q
    |||||||||||||| |||| |||||| ||| |||||||||||| | ||||||| || | || |  |||||  |||||||||||||| | |||||||    
T  7608147 atttgtatttatatattagttaaaaagtatggtcaaagtaagtcaagtgaatagtgcacattgcaaaaattggacatgtattttgaaacggatgga 7608052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 94
Target Start/End: Complemental strand, 32887004 - 32886929
Alignment:
Q  19 atttgtatttatatgttagctaaaaaatattgtcaaagtaagttatgtgaataatgtatatcgtgaaaatgtgaca 94  Q
    |||| ||||| |||||||| || |||||||  | ||||||||||||||||||||||| |||  | |||||||||||    
T  32887004 atttatatttgtatgttagttagaaaatatgattaaagtaagttatgtgaataatgtctattataaaaatgtgaca 32886929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 25 - 71
Target Start/End: Original strand, 22839097 - 22839143
Alignment:
Q  25 atttatatgttagctaaaaaatattgtcaaagtaagttatgtgaata 71  Q
    ||||||||  ||| |||||||||| ||||||||||||||||||||||    
T  22839097 atttatatactagttaaaaaatatggtcaaagtaagttatgtgaata 22839143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 104
Target Start/End: Complemental strand, 5405094 - 5405009
Alignment:
Q  19 atttgtatttatatgttagctaaaaaatattgtcaaagtaagttatgtgaataatgtatatcgtgaaaatgtgacatgtattttga 104  Q
    |||||||||||||| |||| |||||| ||| |||||||||||| | ||||||| || | || |  |||||  ||||||||||||||    
T  5405094 atttgtatttatatattagttaaaaagtatggtcaaagtaagtcaagtgaatagtgcacattgcaaaaattggacatgtattttga 5405009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 74
Target Start/End: Complemental strand, 7666186 - 7666133
Alignment:
Q  21 ttgtatttatatgttagctaaaaaatattgtcaaagtaagttatgtgaataatg 74  Q
    |||||||||||| |||| ||||| |||| |||||||||| |||| |||||||||    
T  7666186 ttgtatttatatattagataaaatatatggtcaaagtaaattatatgaataatg 7666133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 104
Target Start/End: Original strand, 8042186 - 8042271
Alignment:
Q  19 atttgtatttatatgttagctaaaaaatattgtcaaagtaagttatgtgaataatgtatatcgtgaaaatgtgacatgtattttga 104  Q
    |||||||||||||| |||| |||||| ||| |||||||||||| | ||||||| || | || |  |||||  ||||||||||||||    
T  8042186 atttgtatttatatattagttaaaaagtatggtcaaagtaagtcaagtgaatagtgcacattgcaaaaattggacatgtattttga 8042271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 104
Target Start/End: Original strand, 19141230 - 19141315
Alignment:
Q  19 atttgtatttatatgttagctaaaaaatattgtcaaagtaagttatgtgaataatgtatatcgtgaaaatgtgacatgtattttga 104  Q
    |||||||||||||| |||| |||||| ||| |||||||||||| | ||||||| || | || |  |||||  ||||||||||||||    
T  19141230 atttgtatttatatattagttaaaaagtatggtcaaagtaagtcaagtgaatagtgcacattgcaaaaattggacatgtattttga 19141315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 104
Target Start/End: Complemental strand, 44365255 - 44365170
Alignment:
Q  19 atttgtatttatatgttagctaaaaaatattgtcaaagtaagttatgtgaataatgtatatcgtgaaaatgtgacatgtattttga 104  Q
    |||||||||||||  |||| |||||| ||| |||||||||||| | ||||||| || |||| |  |||||  ||||||||||||||    
T  44365255 atttgtatttatacattagttaaaaagtatggtcaaagtaagtcaagtgaatagtgcatattgcaaaaattggacatgtattttga 44365170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 24 - 104
Target Start/End: Complemental strand, 30548925 - 30548845
Alignment:
Q  24 tatttatatgttagctaaaaaatattgtcaaagtaagttatgtgaataatgtatatcgtgaaaatgtgacatgtattttga 104  Q
    ||||||||| || | |||||||||| ||||| |||| || ||| ||||||| |||| || ||| ||||||||||| |||||    
T  30548925 tatttatatattggttaaaaaatatggtcaacgtaatttgtgtaaataatgcatattgttaaattgtgacatgtaatttga 30548845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 19 - 71
Target Start/End: Original strand, 31610817 - 31610869
Alignment:
Q  19 atttgtatttatatgttagctaaaaaatattgtcaaagtaagttatgtgaata 71  Q
    |||||||||||||| |||| ||||||| || || ||| |||||||||||||||    
T  31610817 atttgtatttatatattagttaaaaaaaatggtaaaaataagttatgtgaata 31610869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 19 - 111
Target Start/End: Complemental strand, 36072272 - 36072180
Alignment:
Q  19 atttgtatttatatgttagctaaaaaatattgtcaaagtaagttatgtgaataatgtatatcgtgaaaatgtgacatgtattttgagatggat 111  Q
    |||| ||||||||  |||| ||||||||||  ||||||||||| |  |||||| || |||| || |||||  |||||||||||||| ||||||    
T  36072272 atttatatttatacattagttaaaaaatatgatcaaagtaagtcaaatgaatagtgcatattgtaaaaattggacatgtattttgaaatggat 36072180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0225 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: scaffold0225
Description:

Target: scaffold0225; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 19 - 100
Target Start/End: Original strand, 8997 - 9078
Alignment:
Q  19 atttgtatttatatgttagctaaaaaatattgtcaaagtaagttatgtgaataatgtatatcgtgaaaatgtgacatgtatt 100  Q
    |||||||||||||| |||| |||||||| | ||||||||||||||||||||||||| |||| || ||| ||||| |||||||    
T  8997 atttgtatttatatattagttaaaaaatgtggtcaaagtaagttatgtgaataatgcatattgtaaaattgtgaaatgtatt 9078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 19 - 100
Target Start/End: Original strand, 138194 - 138275
Alignment:
Q  19 atttgtatttatatgttagctaaaaaatattgtcaaagtaagttatgtgaataatgtatatcgtgaaaatgtgacatgtatt 100  Q
    |||||||||||||| |||| |||||||| | ||||||||||||||||||||||||| |||| || ||| ||||| |||||||    
T  138194 atttgtatttatatattagttaaaaaatgtggtcaaagtaagttatgtgaataatgcatattgtaaaattgtgaaatgtatt 138275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0262 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0262
Description:

Target: scaffold0262; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 19 - 100
Target Start/End: Complemental strand, 22878 - 22797
Alignment:
Q  19 atttgtatttatatgttagctaaaaaatattgtcaaagtaagttatgtgaataatgtatatcgtgaaaatgtgacatgtatt 100  Q
    |||||||||||||| | || |||||||| | |||||| |||||||||||||||||| |||| || ||| ||||| |||||||    
T  22878 atttgtatttatatatgagttaaaaaatgtggtcaaaataagttatgtgaataatgcatattgtaaaattgtgaaatgtatt 22797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 19 - 104
Target Start/End: Complemental strand, 3785618 - 3785533
Alignment:
Q  19 atttgtatttatatgttagctaaaaaatattgtcaaagtaagttatgtgaataatgtatatcgtgaaaatgtgacatgtattttga 104  Q
    |||||||||||||| |||| |||||||||| ||||||||||  ||| |||||| || |||| |||||| | ||| |||||||||||    
T  3785618 atttgtatttatatattagttaaaaaatatggtcaaagtaaactatatgaatagtgcatattgtgaaattatgatatgtattttga 3785533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 19 - 104
Target Start/End: Original strand, 6766714 - 6766799
Alignment:
Q  19 atttgtatttatatgttagctaaaaaatattgtcaaagtaagttatgtgaataatgtatatcgtgaaaatgtgacatgtattttga 104  Q
    ||||| |||||||  |||| |||||||||| |||||| |||||||||||||||||| | || || ||| || ||||||||||||||    
T  6766714 atttgcatttatacattagttaaaaaatatggtcaaaataagttatgtgaataatgcagattgtaaaattgcgacatgtattttga 6766799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 20 - 104
Target Start/End: Original strand, 4131668 - 4131752
Alignment:
Q  20 tttgtatttatatgttagctaaaaaatattgtcaaagtaagttatgtgaataatgtatatcgtgaaaatgtgacatgtattttga 104  Q
    ||||||||||||| |||| |||||||||| || ||||||||||||||||||| | || || || ||| || ||||| ||||||||    
T  4131668 tttgtatttatatattagttaaaaaatatggttaaagtaagttatgtgaatagtatacattgtaaaattgcgacatatattttga 4131752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 19 - 65
Target Start/End: Original strand, 38767223 - 38767269
Alignment:
Q  19 atttgtatttatatgttagctaaaaaatattgtcaaagtaagttatg 65  Q
    |||||||||||||| |||| |||||||||| ||||||||||||||||    
T  38767223 atttgtatttatatattagttaaaaaatatggtcaaagtaagttatg 38767269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 21 - 102
Target Start/End: Original strand, 44594685 - 44594766
Alignment:
Q  21 ttgtatttatatgttagctaaaaaatattgtcaaagtaagttatgtgaataatgtatatcgtgaaaatgtgacatgtatttt 102  Q
    |||||||||||| |||| ||||||||||  | ||| ||| |||||||||| ||| |||| || ||| |||||||||||||||    
T  44594685 ttgtatttatatattagttaaaaaatatgattaaactaaattatgtgaatgatgcatattgtaaaattgtgacatgtatttt 44594766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 19 - 71
Target Start/End: Complemental strand, 7169224 - 7169172
Alignment:
Q  19 atttgtatttatatgttagctaaaaaatattgtcaaagtaagttatgtgaata 71  Q
    |||||||||||||| |||| |||||||||| |||||||||| | |||||||||    
T  7169224 atttgtatttatatattagttaaaaaatatagtcaaagtaaatcatgtgaata 7169172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 19 - 103
Target Start/End: Original strand, 16870644 - 16870728
Alignment:
Q  19 atttgtatttatatgttagctaaaaaatattgtcaaagtaagttatgtgaataatgtatatcgtgaaaatgtgacatgtattttg 103  Q
    |||| ||||||||| |||| ||| |||||| ||||||||||||||| |||||| || |||| || |||  | |||||||||||||    
T  16870644 atttatatttatatattagttaacaaatatggtcaaagtaagttatttgaatagtgcatattgtaaaaccgcgacatgtattttg 16870728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 74
Target Start/End: Complemental strand, 8683916 - 8683861
Alignment:
Q  19 atttgtatttatatgttagctaaaaaatattgtcaaagtaagttatgtgaataatg 74  Q
    |||||||||||||| |||| |||||| ||| |||||||||||| | ||||||||||    
T  8683916 atttgtatttatatattagttaaaaagtatggtcaaagtaagtcaagtgaataatg 8683861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 104
Target Start/End: Complemental strand, 7439001 - 7438916
Alignment:
Q  19 atttgtatttatatgttagctaaaaaatattgtcaaagtaagttatgtgaataatgtatatcgtgaaaatgtgacatgtattttga 104  Q
    |||||||||||||  |||| |||||| ||| |||||| ||||| | |||||||||| |||| |  |||||  ||||||||||||||    
T  7439001 atttgtatttatacattagttaaaaagtatggtcaaaataagtcaagtgaataatgcatattgcaaaaattagacatgtattttga 7438916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 104
Target Start/End: Complemental strand, 20885201 - 20885116
Alignment:
Q  19 atttgtatttatatgttagctaaaaaatattgtcaaagtaagttatgtgaataatgtatatcgtgaaaatgtgacatgtattttga 104  Q
    |||||||||||||  |||| |||||||||| |||||||||||| | ||||||| |  | || || |||||  ||||||||||||||    
T  20885201 atttgtatttatacattagttaaaaaatatggtcaaagtaagtcaagtgaatagtccacattgtaaaaattggacatgtattttga 20885116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 104
Target Start/End: Original strand, 27045572 - 27045657
Alignment:
Q  19 atttgtatttatatgttagctaaaaaatattgtcaaagtaagttatgtgaataatgtatatcgtgaaaatgtgacatgtattttga 104  Q
    |||||||||||||| |||| |||||||||| ||||||||||   ||||||||| | || || || ||| ||  |||||||||||||    
T  27045572 atttgtatttatatattagttaaaaaatatggtcaaagtaaaccatgtgaatagtatacattgtaaaattgcaacatgtattttga 27045657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 104
Target Start/End: Original strand, 28061679 - 28061764
Alignment:
Q  19 atttgtatttatatgttagctaaaaaatattgtcaaagtaagttatgtgaataatgtatatcgtgaaaatgtgacatgtattttga 104  Q
    |||||||||||||| |||| |||||| ||| |||||||||||| | ||||||| || | || |  |||||  ||||||||||||||    
T  28061679 atttgtatttatatattagttaaaaagtatggtcaaagtaagtcaagtgaatagtgcacattgcaaaaattggacatgtattttga 28061764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 104
Target Start/End: Original strand, 32431522 - 32431607
Alignment:
Q  19 atttgtatttatatgttagctaaaaaatattgtcaaagtaagttatgtgaataatgtatatcgtgaaaatgtgacatgtattttga 104  Q
    |||||||||||||  |||| |||||| ||| |||||||||||| | |||||||||| | || |  ||||| |||||| ||||||||    
T  32431522 atttgtatttatacattagttaaaaagtatggtcaaagtaagtcaagtgaataatgcacattgcaaaaatttgacatatattttga 32431607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 104
Target Start/End: Complemental strand, 36341718 - 36341633
Alignment:
Q  19 atttgtatttatatgttagctaaaaaatattgtcaaagtaagttatgtgaataatgtatatcgtgaaaatgtgacatgtattttga 104  Q
    |||| |||||||||||||| |||||| ||| || ||| ||||| ||||||||| || | || |  |||||| ||||||||||||||    
T  36341718 atttatatttatatgttagttaaaaagtatcgttaaattaagtcatgtgaatagtgcacattgcaaaaatgcgacatgtattttga 36341633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 104
Target Start/End: Complemental strand, 36623406 - 36623321
Alignment:
Q  19 atttgtatttatatgttagctaaaaaatattgtcaaagtaagttatgtgaataatgtatatcgtgaaaatgtgacatgtattttga 104  Q
    |||||||||||||| |||| |||||| ||| |||||||||||| | ||||||| || | || |  |||||  ||||||||||||||    
T  36623406 atttgtatttatatattagttaaaaagtatggtcaaagtaagtcaagtgaatagtgcacattgcaaaaattggacatgtattttga 36623321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 104
Target Start/End: Original strand, 38852011 - 38852096
Alignment:
Q  19 atttgtatttatatgttagctaaaaaatattgtcaaagtaagttatgtgaataatgtatatcgtgaaaatgtgacatgtattttga 104  Q
    |||||||||||||| |||| |||||| ||| |||||||||||| | ||||||| || | || |  |||||  ||||||||||||||    
T  38852011 atttgtatttatatattagttaaaaagtatggtcaaagtaagtcaagtgaatagtgcacattggaaaaattggacatgtattttga 38852096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 104
Target Start/End: Complemental strand, 47156125 - 47156040
Alignment:
Q  19 atttgtatttatatgttagctaaaaaatattgtcaaagtaagttatgtgaataatgtatatcgtgaaaatgtgacatgtattttga 104  Q
    |||||||||||||| |||| |||||| ||| |||||||||||| | ||||||| || | || |  |||||  ||||||||||||||    
T  47156125 atttgtatttatatattagttaaaaagtatggtcaaagtaagtcaagtgaatagtgcacattgcaaaaattggacatgtattttga 47156040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 39 - 79
Target Start/End: Complemental strand, 26980125 - 26980085
Alignment:
Q  39 taaaaaatattgtcaaagtaagttatgtgaataatgtatat 79  Q
    |||||||||| |||||| |||||||||||||||||| ||||    
T  26980125 taaaaaatatggtcaaaataagttatgtgaataatgcatat 26980085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 40 - 104
Target Start/End: Original strand, 35570239 - 35570303
Alignment:
Q  40 aaaaaatattgtcaaagtaagttatgtgaataatgtatatcgtgaaaatgtgacatgtattttga 104  Q
    ||||||||| ||||||||||||| |||||||| || | || || ||| || ||||||||||||||    
T  35570239 aaaaaatatggtcaaagtaagttttgtgaatagtgcacattgtaaaattgcgacatgtattttga 35570303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 19 - 71
Target Start/End: Original strand, 40090082 - 40090134
Alignment:
Q  19 atttgtatttatatgttagctaaaaaatattgtcaaagtaagttatgtgaata 71  Q
    |||||||||||||| |||| |||||| ||| |||||||||||| | |||||||    
T  40090082 atttgtatttatatattagttaaaaagtatggtcaaagtaagtcaagtgaata 40090134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 17 - 73
Target Start/End: Complemental strand, 42662286 - 42662231
Alignment:
Q  17 tgatttgtatttatatgttagctaaaaaatattgtcaaagtaagttatgtgaataat 73  Q
    |||||||||||||||| |||| |||||| ||| |||||||||||  |||||||||||    
T  42662286 tgatttgtatttatatattagttaaaaagtatggtcaaagtaag-aatgtgaataat 42662231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0595 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0595
Description:

Target: scaffold0595; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 19 - 71
Target Start/End: Complemental strand, 4046 - 3994
Alignment:
Q  19 atttgtatttatatgttagctaaaaaatattgtcaaagtaagttatgtgaata 71  Q
    |||||||||||||| |||| |||||||||| ||||||||||| ||||||||||    
T  4046 atttgtatttatatattagttaaaaaatatggtcaaagtaagctatgtgaata 3994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 19 - 71
Target Start/End: Original strand, 33700237 - 33700289
Alignment:
Q  19 atttgtatttatatgttagctaaaaaatattgtcaaagtaagttatgtgaata 71  Q
    |||||||||||||| |||| |||||||||| ||||||||||| ||||||||||    
T  33700237 atttgtatttatatattagttaaaaaatatggtcaaagtaagctatgtgaata 33700289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 114
Target Start/End: Complemental strand, 18044523 - 18044428
Alignment:
Q  19 atttgtatttatatgttagctaaaaaatattgtcaaagtaagttatgtgaataatgtatatcgtgaaaatgtgacatgtattttgagatggatgga 114  Q
    |||||||||||||  |||| |||||||||| |||||||||||| | ||||||| || | || |  |||||  |||||||||||||| | |||||||    
T  18044523 atttgtatttatacattagttaaaaaatatggtcaaagtaagtcaagtgaatagtgcacattgcaaaaattggacatgtattttgaaacggatgga 18044428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 19 - 69
Target Start/End: Original strand, 3370420 - 3370470
Alignment:
Q  19 atttgtatttatatgttagctaaaaaatattgtcaaagtaagttatgtgaa 69  Q
    |||||||||||||| |||  |||||||||| |||||||||||| |||||||    
T  3370420 atttgtatttatatattaattaaaaaatatggtcaaagtaagtcatgtgaa 3370470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 104
Target Start/End: Complemental strand, 616881 - 616796
Alignment:
Q  19 atttgtatttatatgttagctaaaaaatattgtcaaagtaagttatgtgaataatgtatatcgtgaaaatgtgacatgtattttga 104  Q
    |||||||||||||| |||| |||||| ||| |||||||||||| | ||||||| || | || |  |||||  ||||||||||||||    
T  616881 atttgtatttatatattagttaaaaagtatggtcaaagtaagtcaagtgaatagtgcacattgcaaaaattggacatgtattttga 616796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 104
Target Start/End: Complemental strand, 623274 - 623189
Alignment:
Q  19 atttgtatttatatgttagctaaaaaatattgtcaaagtaagttatgtgaataatgtatatcgtgaaaatgtgacatgtattttga 104  Q
    |||||||||||||| |||| |||||| ||| |||||||||||| | ||||||| || | || |  |||||  ||||||||||||||    
T  623274 atttgtatttatatattagttaaaaagtatggtcaaagtaagtcaagtgaatagtgcacattgcaaaaattggacatgtattttga 623189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 54 - 95
Target Start/End: Complemental strand, 3448221 - 3448180
Alignment:
Q  54 aagtaagttatgtgaataatgtatatcgtgaaaatgtgacat 95  Q
    ||||| |||||||||||||||||||| || ||||||||||||    
T  3448221 aagtatgttatgtgaataatgtatattgtaaaaatgtgacat 3448180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 104
Target Start/End: Complemental strand, 14237378 - 14237293
Alignment:
Q  19 atttgtatttatatgttagctaaaaaatattgtcaaagtaagttatgtgaataatgtatatcgtgaaaatgtgacatgtattttga 104  Q
    |||||||||||||  |||| |||||||||| |||||||||||| | ||||||| || | || |  |||||  ||||||||||||||    
T  14237378 atttgtatttatacattagttaaaaaatatggtcaaagtaagtcaagtgaatagtgcacattgcaaaaattggacatgtattttga 14237293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 104
Target Start/End: Complemental strand, 32998548 - 32998463
Alignment:
Q  19 atttgtatttatatgttagctaaaaaatattgtcaaagtaagttatgtgaataatgtatatcgtgaaaatgtgacatgtattttga 104  Q
    |||||||||||||  |||| |||||||||| |||||||||||| | ||||||| || | || |  |||||  ||||||||||||||    
T  32998548 atttgtatttatacattagttaaaaaatatggtcaaagtaagtcaagtgaatagtgcacattgcaaaaattggacatgtattttga 32998463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 104
Target Start/End: Complemental strand, 40494482 - 40494397
Alignment:
Q  19 atttgtatttatatgttagctaaaaaatattgtcaaagtaagttatgtgaataatgtatatcgtgaaaatgtgacatgtattttga 104  Q
    |||||||||||||| |||| |||||| ||| |||||||||||| | ||||||| || | || |  |||||  ||||||||||||||    
T  40494482 atttgtatttatatattagttaaaaagtatggtcaaagtaagtcaagtgaatagtgcacattggaaaaattggacatgtattttga 40494397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 19 - 71
Target Start/End: Original strand, 4270256 - 4270308
Alignment:
Q  19 atttgtatttatatgttagctaaaaaatattgtcaaagtaagttatgtgaata 71  Q
    |||||||||||||  |||| |||||||||| |||||||||||| | |||||||    
T  4270256 atttgtatttatacattagttaaaaaatatggtcaaagtaagtcaagtgaata 4270308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 19 - 71
Target Start/End: Complemental strand, 5878414 - 5878362
Alignment:
Q  19 atttgtatttatatgttagctaaaaaatattgtcaaagtaagttatgtgaata 71  Q
    |||||||||||||  |||| |||||||||| |||||||||||| | |||||||    
T  5878414 atttgtatttatacattagttaaaaaatatggtcaaagtaagtcaagtgaata 5878362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 19 - 59
Target Start/End: Complemental strand, 38957268 - 38957228
Alignment:
Q  19 atttgtatttatatgttagctaaaaaatattgtcaaagtaa 59  Q
    ||||||||||||| ||||| |||||||||| ||||||||||    
T  38957268 atttgtatttatacgttagttaaaaaatatggtcaaagtaa 38957228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 19 - 71
Target Start/End: Complemental strand, 41263908 - 41263856
Alignment:
Q  19 atttgtatttatatgttagctaaaaaatattgtcaaagtaagttatgtgaata 71  Q
    |||||||||||||  |||| |||||||||| |||||||||||| | |||||||    
T  41263908 atttgtatttatacattagttaaaaaatatggtcaaagtaagtcaagtgaata 41263856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 19 - 71
Target Start/End: Complemental strand, 44561882 - 44561830
Alignment:
Q  19 atttgtatttatatgttagctaaaaaatattgtcaaagtaagttatgtgaata 71  Q
    ||||||||||||||||||| |||||| ||| |||||||||||| |||||||||    
T  44561882 atttgtatttatatgttagttaaaaagtatggtcaaagtaagtcatgtgaata 44561830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 19 - 104
Target Start/End: Original strand, 42761647 - 42761732
Alignment:
Q  19 atttgtatttatatgttagctaaaaaatattgtcaaagtaagttatgtgaataatgtatatcgtgaaaatgtgacatgtattttga 104  Q
    |||||||||||||| |||| |||||| ||| |||||||||||| | ||||||| || | || || |||||  ||||||||||||||    
T  42761647 atttgtatttatatattagttaaaaagtatggtcaaagtaagtcaagtgaatagtgcacattgtaaaaattggacatgtattttga 42761732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 19 - 71
Target Start/End: Original strand, 27813452 - 27813504
Alignment:
Q  19 atttgtatttatatgttagctaaaaaatattgtcaaagtaagttatgtgaata 71  Q
    |||||||||||||| |||| |||||||||| |||||| |||| ||||||||||    
T  27813452 atttgtatttatatattagttaaaaaatatagtcaaaataagctatgtgaata 27813504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 102
Target Start/End: Original strand, 15332970 - 15333053
Alignment:
Q  19 atttgtatttatatgttagctaaaaaatattgtcaaagtaagttatgtgaataatgtatatcgtgaaaatgtgacatgtatttt 102  Q
    |||||||||||||| |||| |||||||| | ||||||| ||| |||||||||| || | || || ||| || ||||||||||||    
T  15332970 atttgtatttatatattagttaaaaaatttggtcaaagcaagctatgtgaatagtgcacattgtaaaattgcgacatgtatttt 15333053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 104
Target Start/End: Complemental strand, 6910432 - 6910347
Alignment:
Q  19 atttgtatttatatgttagctaaaaaatattgtcaaagtaagttatgtgaataatgtatatcgtgaaaatgtgacatgtattttga 104  Q
    |||||||||||||  |||| |||||||||| || ||||||||| | ||||||| |||| || || ||| |  ||||||||||||||    
T  6910432 atttgtatttatacattagttaaaaaatatggttaaagtaagtcaagtgaatagtgtacattgtaaaagttggacatgtattttga 6910347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 104
Target Start/End: Original strand, 13499499 - 13499584
Alignment:
Q  19 atttgtatttatatgttagctaaaaaatattgtcaaagtaagttatgtgaataatgtatatcgtgaaaatgtgacatgtattttga 104  Q
    |||||||||||||| |||| |||||| ||| |||||||||||| | ||||||| || | || |  |||||  ||||||||||||||    
T  13499499 atttgtatttatatattagttaaaaagtatggtcaaagtaagtcaagtgaatagtgcacattgcaaaaattggacatgtattttga 13499584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 104
Target Start/End: Original strand, 41252927 - 41253012
Alignment:
Q  19 atttgtatttatatgttagctaaaaaatattgtcaaagtaagttatgtgaataatgtatatcgtgaaaatgtgacatgtattttga 104  Q
    |||||||||||||| |||| |||||||||| || |||||||| ||| |||||| || | || || ||| || ||||| ||||||||    
T  41252927 atttgtatttatatattagttaaaaaatatggttaaagtaagctatatgaatagtgcacattgtaaaattgcgacatatattttga 41253012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 104
Target Start/End: Original strand, 42490360 - 42490445
Alignment:
Q  19 atttgtatttatatgttagctaaaaaatattgtcaaagtaagttatgtgaataatgtatatcgtgaaaatgtgacatgtattttga 104  Q
    |||||||||||||| |||| |||||| ||| |||||||||||| | ||||||| || | || |  |||||  ||||||||||||||    
T  42490360 atttgtatttatatattagttaaaaagtatggtcaaagtaagtcaagtgaatagtgcacattgcaaaaattggacatgtattttga 42490445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 19 - 79
Target Start/End: Complemental strand, 17643829 - 17643769
Alignment:
Q  19 atttgtatttatatgttagctaaaaaatattgtcaaagtaagttatgtgaataatgtatat 79  Q
    ||||||||||| || |||| |||||||||| |||| ||||| |||||| ||||||| ||||    
T  17643829 atttgtatttacatattagttaaaaaatatagtcacagtaaattatgttaataatgcatat 17643769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 19 - 71
Target Start/End: Complemental strand, 20765294 - 20765242
Alignment:
Q  19 atttgtatttatatgttagctaaaaaatattgtcaaagtaagttatgtgaata 71  Q
    |||||||||||||| |||| |||||| ||| |||||||||||| | |||||||    
T  20765294 atttgtatttatatattagttaaaaagtatagtcaaagtaagtcaagtgaata 20765242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 19 - 71
Target Start/End: Complemental strand, 25527502 - 25527450
Alignment:
Q  19 atttgtatttatatgttagctaaaaaatattgtcaaagtaagttatgtgaata 71  Q
    |||||||||||||| | || |||||||||| ||| |||||||| |||||||||    
T  25527502 atttgtatttatatatcagttaaaaaatatggtcgaagtaagtcatgtgaata 25527450  T

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Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 19 - 71
Target Start/End: Original strand, 27334895 - 27334947
Alignment:
Q  19 atttgtatttatatgttagctaaaaaatattgtcaaagtaagttatgtgaata 71  Q
    |||||||||||||| |||| |||||| ||| |||||||||||| | |||||||    
T  27334895 atttgtatttatatattagttaaaaagtatggtcaaagtaagtcaagtgaata 27334947  T

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Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 26 - 74
Target Start/End: Complemental strand, 30057390 - 30057342
Alignment:
Q  26 tttatatgttagctaaaaaatattgtcaaagtaagttatgtgaataatg 74  Q
    ||||||| |||| |||||||||| || |||||| |||||||||||||||    
T  30057390 tttatatattagttaaaaaatatggttaaagtatgttatgtgaataatg 30057342  T

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Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 19 - 71
Target Start/End: Original strand, 39866305 - 39866357
Alignment:
Q  19 atttgtatttatatgttagctaaaaaatattgtcaaagtaagttatgtgaata 71  Q
    |||||||||||||| |||| |||||| ||| |||||||||||| | |||||||    
T  39866305 atttgtatttatatattagttaaaaagtatggtcaaagtaagtcaagtgaata 39866357  T

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Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 19 - 71
Target Start/End: Original strand, 41751574 - 41751626
Alignment:
Q  19 atttgtatttatatgttagctaaaaaatattgtcaaagtaagttatgtgaata 71  Q
    |||||||||||||| |||| ||||||||||  |||||||| ||||||| ||||    
T  41751574 atttgtatttatatattagttaaaaaatatgatcaaagtatgttatgtaaata 41751626  T

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Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 19 - 67
Target Start/End: Complemental strand, 41943312 - 41943264
Alignment:
Q  19 atttgtatttatatgttagctaaaaaatattgtcaaagtaagttatgtg 67  Q
    ||||||||||| || |||| ||||||||||||| ||| |||||||||||    
T  41943312 atttgtatttaaatattagttaaaaaatattgttaaaataagttatgtg 41943264  T

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Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 19 - 119
Target Start/End: Original strand, 36757650 - 36757750
Alignment:
Q  19 atttgtatttatatgttagctaaaaaatattgtcaaagtaagttatgtgaataatgtatatcgtgaaaatgtgacatgtattttgagatggatggattat 118  Q
    |||||||||||||| |||| |||||| ||| |||||||||||| | ||||||| || | || |  |||||  |||||||||||||| ||||||||| |||    
T  36757650 atttgtatttatatattagttaaaaagtatggtcaaagtaagtcaagtgaatagtgcacattgcaaaaattggacatgtattttgaaatggatggagtat 36757749  T
Q  119 a 119  Q
    |    
T  36757750 a 36757750  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 19 - 102
Target Start/End: Original strand, 3485371 - 3485454
Alignment:
Q  19 atttgtatttatatgttagctaaaaaatattgtcaaagtaagttatgtgaataatgtatatcgtgaaaatgtgacatgtatttt 102  Q
    |||||||||||||| |||| ||||||||||  ||||||||||||||| ||||| || |||| || ||| |  ||||||||||||    
T  3485371 atttgtatttatatattagttaaaaaatatgatcaaagtaagttatgcgaatagtgcatattgtaaaattacgacatgtatttt 3485454  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 19 - 69
Target Start/End: Complemental strand, 34635005 - 34634955
Alignment:
Q  19 atttgtatttatatgttagctaaaaaatattgtcaaagtaagttatgtgaa 69  Q
    |||||||||||||| |||| ||||||||||| ||||| |||||||||||||    
T  34635005 atttgtatttatatattagttaaaaaatattatcaaaataagttatgtgaa 34634955  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 19 - 120
Target Start/End: Original strand, 11641231 - 11641332
Alignment:
Q  19 atttgtatttatatgttagctaaaaaatattgtcaaagtaagttatgtgaataatgtatatcgtgaaaatgtgacatgtattttgagatggatggattat 118  Q
    |||||||||||||| |||| |||||| ||| |||||||||||| | ||||||| || | || |  |||||  |||||||||||||| ||||| ||| |||    
T  11641231 atttgtatttatatattagttaaaaagtatggtcaaagtaagtcaagtgaatagtgcacattgcaaaaattggacatgtattttgaaatggagggagtat 11641330  T
Q  119 at 120  Q
    ||    
T  11641331 at 11641332  T

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Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 19 - 104
Target Start/End: Original strand, 15382590 - 15382675
Alignment:
Q  19 atttgtatttatatgttagctaaaaaatattgtcaaagtaagttatgtgaataatgtatatcgtgaaaatgtgacatgtattttga 104  Q
    |||||||||||||| |||  |||||||  | |||| ||||||||||||||||| |||| || || ||| || ||||||||||||||    
T  15382590 atttgtatttatatattatttaaaaaaattggtcagagtaagttatgtgaatagtgtacattgtaaaattgcgacatgtattttga 15382675  T

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Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 19 - 104
Target Start/End: Original strand, 28030845 - 28030930
Alignment:
Q  19 atttgtatttatatgttagctaaaaaatattgtcaaagtaagttatgtgaataatgtatatcgtgaaaatgtgacatgtattttga 104  Q
    ||||||||||||||||||| |||||| ||| |||||| ||||| |||| ||||||| | || |  ||||||  |||||||||||||    
T  28030845 atttgtatttatatgttagttaaaaagtatggtcaaaataagtcatgtaaataatgcacattgcaaaaatgcaacatgtattttga 28030930  T

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Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 19 - 104
Target Start/End: Original strand, 38153441 - 38153526
Alignment:
Q  19 atttgtatttatatgttagctaaaaaatattgtcaaagtaagttatgtgaataatgtatatcgtgaaaatgtgacatgtattttga 104  Q
    ||||||||||||||||||| |||||| ||| || | ||||||| ||||||||| || | ||  | |||||| ||||||||||||||    
T  38153441 atttgtatttatatgttagttaaaaagtatggtaacagtaagtcatgtgaatagtgcacattataaaaatgcgacatgtattttga 38153526  T

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Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 21 - 101
Target Start/End: Complemental strand, 16689920 - 16689840
Alignment:
Q  21 ttgtatttatatgttagctaaaaaatattgtcaaagtaagttatgtgaataatgtatatcgtgaaaatgtgacatgtattt 101  Q
    |||||||||||| |||| || |||||||  ||||||||||||||||||||| || | ||||| ||| ||  ||||||||||    
T  16689920 ttgtatttatatattagttagaaaatatgatcaaagtaagttatgtgaatagtgcacatcgtaaaattgctacatgtattt 16689840  T

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Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 19 - 71
Target Start/End: Original strand, 30385309 - 30385361
Alignment:
Q  19 atttgtatttatatgttagctaaaaaatattgtcaaagtaagttatgtgaata 71  Q
    |||||||||||||| |||| |||||||||| ||||||||||  ||||||||||    
T  30385309 atttgtatttatatattagttaaaaaatatggtcaaagtaaactatgtgaata 30385361  T

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Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 102
Target Start/End: Original strand, 44644519 - 44644602
Alignment:
Q  19 atttgtatttatatgttagctaaaaaatattgtcaaagtaagttatgtgaataatgtatatcgtgaaaatgtgacatgtatttt 102  Q
    |||||||||||||| || | ||||||||||  ||||||||||| |||||||||||  | || |  |||||| ||||||||||||    
T  44644519 atttgtatttatatatttgttaaaaaatatgatcaaagtaagtcatgtgaataatacacattgaaaaaatgcgacatgtatttt 44644602  T

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Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 104
Target Start/End: Original strand, 16120604 - 16120689
Alignment:
Q  19 atttgtatttatatgttagctaaaaaatattgtcaaagtaagttatgtgaataatgtatatcgtgaaaatgtgacatgtattttga 104  Q
    |||||||||||||  |||| |||||| ||| |||||||||||| | |||||||||| | || |  |||||  ||||||||||||||    
T  16120604 atttgtatttatacattagttaaaaagtatggtcaaagtaagtcaagtgaataatgcacattgcaaaaattggacatgtattttga 16120689  T

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Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 76
Target Start/End: Complemental strand, 48375100 - 48375043
Alignment:
Q  19 atttgtatttatatgttagctaaaaaatattgtcaaagtaagttatgtgaataatgta 76  Q
    |||||||||||||  |||| ||||||||||  ||||| ||||||| ||||||||||||    
T  48375100 atttgtatttataaattagttaaaaaatatgatcaaaataagttaagtgaataatgta 48375043  T

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Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 21 - 65
Target Start/End: Original strand, 6406118 - 6406162
Alignment:
Q  21 ttgtatttatatgttagctaaaaaatattgtcaaagtaagttatg 65  Q
    |||||||||||| |||| |||||||||| |||||| |||||||||    
T  6406118 ttgtatttatatattagttaaaaaatatagtcaaactaagttatg 6406162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 19 - 71
Target Start/End: Complemental strand, 6766470 - 6766418
Alignment:
Q  19 atttgtatttatatgttagctaaaaaatattgtcaaagtaagttatgtgaata 71  Q
    |||||||||||||| |||| |||||| ||| |||||||||||| | |||||||    
T  6766470 atttgtatttatatattagttaaaaagtatggtcaaagtaagtcaagtgaata 6766418  T

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Target: scaffold0099 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0099
Description:

Target: scaffold0099; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 19 - 71
Target Start/End: Original strand, 28816 - 28868
Alignment:
Q  19 atttgtatttatatgttagctaaaaaatattgtcaaagtaagttatgtgaata 71  Q
    |||||||||||||  |||| |||||||||| ||||||||||| ||||||||||    
T  28816 atttgtatttataaattagttaaaaaatatggtcaaagtaagctatgtgaata 28868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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