View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18200_high_9 (Length: 497)
Name: NF18200_high_9
Description: NF18200
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18200_high_9 |
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Alignment Details
Target: chr7 (Bit Score: 322; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 118 - 475
Target Start/End: Complemental strand, 18888571 - 18888215
Alignment:
| Q |
118 |
tgaaaatcaaaaaatgcatttgagtaatcctaaaaagttaaacacaatgctattattgttgtcatcgcaatgaagtgattgtgtttgtataaaccaaaga |
217 |
Q |
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| T |
18888571 |
tgaaaatcaaaaaatgaatttgagtaatcctaaaaagt-aaacacaatgctattattgttgtcatcgcaatgaagtgattgtgtttgtataaaccaaaga |
18888473 |
T |
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| Q |
218 |
aaggtgattgaaatctctcttaactagccaaccaagaattaaaattgtacactaattaagagtaaactcattttgtttgaatctattttgcaacatgttc |
317 |
Q |
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| T |
18888472 |
aaggtgattgaaatctctcttaactaaccaaccaagaattaaaattgtacactaattaagagtaaattaattttgtttgaatctactttgcaacatgttc |
18888373 |
T |
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| Q |
318 |
cttcactttgcttcaagatcttcaaacttatatgtcaatgaaatcttcggccatccatgggaaagttccaaaagcaagaccttcttagagtagtctcttt |
417 |
Q |
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| T |
18888372 |
cttcactttgcttcaagatcttcaaacttatatgtcgatgaaatcttcggccatccatgggaaagttccaaaagcaagaccttcttagagtagtctcttt |
18888273 |
T |
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| Q |
418 |
atattagtaaatgaagcttcaataaacttatcatcaacatgcagctcaatcaagtgca |
475 |
Q |
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| T |
18888272 |
ataatagtaaatgaagcttcaataaacttatcatcaacatgcagctcaatcaagtgca |
18888215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 290 - 452
Target Start/End: Complemental strand, 18867636 - 18867468
Alignment:
| Q |
290 |
ttgtttgaatctattttgcaacatgtt-ccttcactttgcttcaagatcttcaaacttatatgt-----caatgaaatcttcggccatccatgggaaagt |
383 |
Q |
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| T |
18867636 |
ttgttcgagtctattttccaacatgtttccttcacttggcttcacgttcttcaagcttatatattccatcaatgaaatcttctgccatccacagaaaaga |
18867537 |
T |
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| Q |
384 |
tccaaaagcaagaccttcttagagtagtctctttatattagtaaatgaagcttcaataaacttatcatc |
452 |
Q |
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| T |
18867536 |
tccaaaagcaagaccttcccatagtagtctctttatactagaaaatgaagcttcaataaacctatcatc |
18867468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 422 - 475
Target Start/End: Complemental strand, 18881617 - 18881564
Alignment:
| Q |
422 |
tagtaaatgaagcttcaataaacttatcatcaacatgcagctcaatcaagtgca |
475 |
Q |
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| T |
18881617 |
tagtaaatgaagcttcaataaacttatcatcaacatacagctcaatcaagtgca |
18881564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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